Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:86519444-88270548

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282 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Esrrb 12 86361117 to 86521628 160511 + protein coding gene estrogen related receptor, beta
Tssr114465 12 86520026 to 86520064 38 + TSS region transcription start site region 114465
Tssr114466 12 86520556 to 86520572 16 + TSS region transcription start site region 114466
Gm8504 12 86650571 to 86651659 1088 + pseudogene predicted gene 8504
Gm27993 12 86651170 to 86651254 84 + unclassified non-coding RNA gene predicted gene, 27993
Gm22004 12 86655125 to 86655231 106 + snRNA gene predicted gene, 22004
Cpgi4920 12 86678379 to 86679650 1271 CpG island CpG island 4920
Tssr114467 12 86678475 to 86678498 23 + TSS region transcription start site region 114467
Tssr114468 12 86678531 to 86678548 17 + TSS region transcription start site region 114468
Tssr114469 12 86678685 to 86678796 111 + TSS region transcription start site region 114469
Vash1 12 86678700 to 86692091 13391 + protein coding gene vasohibin 1
Tssr114470 12 86678873 to 86678886 13 + TSS region transcription start site region 114470
Tssr114471 12 86679450 to 86679461 11 + TSS region transcription start site region 114471
Tssr114472 12 86680009 to 86680036 27 + TSS region transcription start site region 114472
Cpgi4921 12 86688997 to 86689340 343 CpG island CpG island 4921
Tssr114473 12 86693435 to 86693439 4 + TSS region transcription start site region 114473
Angel1 12 86700502 to 86726460 25958 - protein coding gene angel homolog 1
Gm17138 12 86714986 to 86715444 458 + pseudogene predicted gene 17138
Cpgi4922 12 86725899 to 86726562 663 CpG island CpG island 4922
Tssr117123 12 86726102 to 86726140 38 - TSS region transcription start site region 117123
Tssr117124 12 86726147 to 86726154 7 - TSS region transcription start site region 117124
Gm32755 12 86726307 to 86727577 1270 + lncRNA gene predicted gene, 32755
Tssr117125 12 86726439 to 86726475 36 - TSS region transcription start site region 117125
Tssr117126 12 86734214 to 86734226 12 - TSS region transcription start site region 117126
Tssr117127 12 86734299 to 86734302 3 - TSS region transcription start site region 117127
Tssr114474 12 86734342 to 86734349 7 + TSS region transcription start site region 114474
Tssr114475 12 86734365 to 86734377 12 + TSS region transcription start site region 114475
Lrrc74a 12 86734369 to 86763797 29428 + protein coding gene leucine rich repeat containing 74A
Tssr114476 12 86734381 to 86734417 36 + TSS region transcription start site region 114476
D12Mit258 12 86735120 to 86735245 125 DNA segment DNA Segment, Chr 12, Massachusetts Institute of Technology 258
D12Mit51 12 86772761 to 86772899 138 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 51
Gm25888 12 86809957 to 86810258 301 + unclassified non-coding RNA gene predicted gene, 25888
Cpgi4923 12 86823822 to 86824220 398 CpG island CpG island 4923
Tssr117128 12 86824914 to 86824956 42 - TSS region transcription start site region 117128
Gm32806 12 86825441 to 86826291 850 + lncRNA gene predicted gene, 32806
Gm40491 12 86831096 to 86833840 2744 - lncRNA gene predicted gene, 40491
Cpgi4924 12 86832174 to 86832512 338 CpG island CpG island 4924
Tssr114477 12 86832674 to 86832722 48 + TSS region transcription start site region 114477
Tssr114478 12 86832753 to 86832780 27 + TSS region transcription start site region 114478
Tssr3902 12 86833763 to 86833798 35 - TSS region transcription start site region 3902
Tssr114479 12 86834137 to 86834173 36 + TSS region transcription start site region 114479
Tssr117129 12 86834567 to 86834610 43 - TSS region transcription start site region 117129
Cpgi4925 12 86836854 to 86837037 183 CpG island CpG island 4925
Tssr114480 12 86836943 to 86836946 3 + TSS region transcription start site region 114480
Gm10095 12 86845744 to 86846203 459 - pseudogene predicted gene 10095
Tssr114481 12 86867697 to 86867742 45 + TSS region transcription start site region 114481
Irf2bpl 12 86880701 to 86884798 4097 - protein coding gene interferon regulatory factor 2 binding protein-like
Cpgi4926 12 86881821 to 86885124 3303 CpG island CpG island 4926
Tssr117130 12 86883912 to 86883927 15 - TSS region transcription start site region 117130
Tssr117131 12 86883945 to 86884034 89 - TSS region transcription start site region 117131
Tssr3903 12 86884070 to 86884081 11 - TSS region transcription start site region 3903
Tssr117132 12 86884401 to 86884413 12 - TSS region transcription start site region 117132
Tssr117133 12 86884466 to 86884475 9 - TSS region transcription start site region 117133
Tssr117134 12 86884703 to 86884714 11 - TSS region transcription start site region 117134
Tssr117135 12 86884716 to 86884750 34 - TSS region transcription start site region 117135
Tssr117136 12 86884756 to 86884806 50 - TSS region transcription start site region 117136
Tssr117137 12 86884808 to 86884842 34 - TSS region transcription start site region 117137
Tssr117138 12 86884846 to 86884858 12 - TSS region transcription start site region 117138
Tssr117139 12 86885860 to 86885886 26 - TSS region transcription start site region 117139
Cpgi4927 12 86888043 to 86888511 468 CpG island CpG island 4927
Gm26698 12 86891404 to 86892567 1163 - lincRNA gene predicted gene, 26698
Tssr114482 12 86891607 to 86891624 17 + TSS region transcription start site region 114482
Cpgi4928 12 86891703 to 86892292 589 CpG island CpG island 4928
Tssr117140 12 86892540 to 86892569 29 - TSS region transcription start site region 117140
Tssr114483 12 86894565 to 86894571 6 + TSS region transcription start site region 114483
Tssr114484 12 86895256 to 86895272 16 + TSS region transcription start site region 114484
Tssr114485 12 86895295 to 86895315 20 + TSS region transcription start site region 114485
Tssr114486 12 86895318 to 86895339 21 + TSS region transcription start site region 114486
Tssr117141 12 86896890 to 86896901 11 - TSS region transcription start site region 117141
Tssr117142 12 86897017 to 86897028 11 - TSS region transcription start site region 117142
Tssr114487 12 86902580 to 86902593 13 + TSS region transcription start site region 114487
Tssr114488 12 86902699 to 86902711 12 + TSS region transcription start site region 114488
Gm32934 12 86940993 to 86947056 6063 - lncRNA gene predicted gene, 32934
Cpgi4929 12 86946398 to 86948097 1699 CpG island CpG island 4929
Tssr114489 12 86946521 to 86946532 11 + TSS region transcription start site region 114489
Tssr114490 12 86947031 to 86947055 24 + TSS region transcription start site region 114490
Cipc 12 86947043 to 86965362 18319 + protein coding gene CLOCK interacting protein, circadian
Tssr117143 12 86947328 to 86947335 7 - TSS region transcription start site region 117143
Tssr114491 12 86947369 to 86947430 61 + TSS region transcription start site region 114491
Tssr114492 12 86947431 to 86947481 50 + TSS region transcription start site region 114492
Tssr114493 12 86948880 to 86948883 3 + TSS region transcription start site region 114493
Tssr117144 12 86949569 to 86949583 14 - TSS region transcription start site region 117144
Tssr114494 12 86949722 to 86949742 20 + TSS region transcription start site region 114494
Tssr117145 12 86950451 to 86950456 5 - TSS region transcription start site region 117145
Tssr117146 12 86950537 to 86950566 29 - TSS region transcription start site region 117146
Tssr114495 12 86952500 to 86952509 9 + TSS region transcription start site region 114495
Tssr114496 12 86952593 to 86952614 21 + TSS region transcription start site region 114496
Tssr114497 12 86952736 to 86952744 8 + TSS region transcription start site region 114497
Cpgi4930 12 86960321 to 86960565 244 CpG island CpG island 4930
Tssr114498 12 86960363 to 86960391 28 + TSS region transcription start site region 114498
Cpgi4931 12 86974484 to 86974941 457 CpG island CpG island 4931
Cpgi4932 12 86977766 to 86977962 196 CpG island CpG island 4932
Zdhhc22 12 86980763 to 86990430 9667 - protein coding gene zinc finger, DHHC-type containing 22
Tssr117147 12 86983088 to 86983108 20 - TSS region transcription start site region 117147
Cpgi4933 12 86983385 to 86983837 452 CpG island CpG island 4933
Cpgi4934 12 86989675 to 86990801 1126 CpG island CpG island 4934
Tssr117148 12 86990451 to 86990467 16 - TSS region transcription start site region 117148
Tssr117149 12 86990468 to 86990483 15 - TSS region transcription start site region 117149
Tssr117150 12 86990484 to 86990494 10 - TSS region transcription start site region 117150
Tssr117151 12 86990503 to 86990521 18 - TSS region transcription start site region 117151
Tssr117152 12 86990522 to 86990533 11 - TSS region transcription start site region 117152
Tssr117153 12 86990569 to 86990588 19 - TSS region transcription start site region 117153
Tssr117154 12 86990603 to 86990612 9 - TSS region transcription start site region 117154
Tssr3904 12 86990659 to 86990662 3 - TSS region transcription start site region 3904
Tssr114499 12 87021321 to 87021333 12 + TSS region transcription start site region 114499
Tmem63c 12 87021340 to 87090043 68703 + protein coding gene transmembrane protein 63c
Tssr114500 12 87021366 to 87021372 6 + TSS region transcription start site region 114500
Tssr114501 12 87021375 to 87021382 7 + TSS region transcription start site region 114501
Tssr114502 12 87026286 to 87026297 11 + TSS region transcription start site region 114502
Cpgi4935 12 87026301 to 87026937 636 CpG island CpG island 4935
Tssr114503 12 87026318 to 87026337 19 + TSS region transcription start site region 114503
Tssr114504 12 87026458 to 87026522 64 + TSS region transcription start site region 114504
Tssr114505 12 87026570 to 87026583 13 + TSS region transcription start site region 114505
Gm25847 12 87034766 to 87034861 95 + miRNA gene predicted gene, 25847
Tssr117155 12 87048744 to 87048746 2 - TSS region transcription start site region 117155
Gm15745 12 87067477 to 87067591 114 + pseudogene predicted gene 15745
Gm18499 12 87080656 to 87081676 1020 - pseudogene predicted gene, 18499
Ngb 12 87097531 to 87102539 5008 - protein coding gene neuroglobin
Cpgi4936 12 87101954 to 87102602 648 CpG island CpG island 4936
Pomt2 12 87106861 to 87147968 41107 - protein coding gene protein-O-mannosyltransferase 2
Tssr3905 12 87109325 to 87109330 5 + TSS region transcription start site region 3905
Cpgi4937 12 87146967 to 87148392 1425 CpG island CpG island 4937
Tssr114506 12 87147149 to 87147201 52 + TSS region transcription start site region 114506
Gstz1 12 87147165 to 87164723 17558 + protein coding gene glutathione transferase zeta 1 (maleylacetoacetate isomerase)
Tssr117156 12 87147418 to 87147476 58 - TSS region transcription start site region 117156
Tssr117157 12 87147484 to 87147495 11 - TSS region transcription start site region 117157
Tssr114507 12 87147703 to 87147783 80 + TSS region transcription start site region 114507
Tssr114508 12 87147785 to 87147792 7 + TSS region transcription start site region 114508
Tssr117158 12 87147883 to 87147908 25 - TSS region transcription start site region 117158
Tssr114509 12 87147970 to 87147997 27 + TSS region transcription start site region 114509
Gm6566 12 87149475 to 87155485 6010 - antisense lncRNA gene predicted gene 6566
Tssr114510 12 87157580 to 87157599 19 + TSS region transcription start site region 114510
Tssr114511 12 87157600 to 87157641 41 + TSS region transcription start site region 114511
Tssr114512 12 87157876 to 87157890 14 + TSS region transcription start site region 114512
Tssr117159 12 87159947 to 87159948 1 - TSS region transcription start site region 117159
Tssr114513 12 87163703 to 87163729 26 + TSS region transcription start site region 114513
Tssr114514 12 87163771 to 87163797 26 + TSS region transcription start site region 114514
Tssr114515 12 87163817 to 87163831 14 + TSS region transcription start site region 114515
Tssr114516 12 87163857 to 87163869 12 + TSS region transcription start site region 114516
Tmed8 12 87166237 to 87200229 33992 - protein coding gene transmembrane p24 trafficking protein 8
Gm40496 12 87168628 to 87184502 15874 + lncRNA gene predicted gene, 40496
Cpgi4938 12 87199538 to 87200543 1005 CpG island CpG island 4938
Tssr117160 12 87200200 to 87200284 84 - TSS region transcription start site region 117160
Tssr117161 12 87200306 to 87200344 38 - TSS region transcription start site region 117161
Tssr114517 12 87200336 to 87200345 9 + TSS region transcription start site region 114517
Samd15 12 87200458 to 87213538 13080 + protein coding gene sterile alpha motif domain containing 15
Tssr114518 12 87200502 to 87200522 20 + TSS region transcription start site region 114518
Tssr114519 12 87200524 to 87200544 20 + TSS region transcription start site region 114519
D12Mit76 12 87215652 to 87215908 256 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 76
Noxred1 12 87221123 to 87238601 17478 - protein coding gene NADP+ dependent oxidoreductase domain containing 1
Tssr117162 12 87225089 to 87225128 39 - TSS region transcription start site region 117162
Tssr117163 12 87236994 to 87237004 10 - TSS region transcription start site region 117163
Tssr117164 12 87237005 to 87237019 14 - TSS region transcription start site region 117164
Tssr117165 12 87238703 to 87238752 49 - TSS region transcription start site region 117165
Tssr117166 12 87238756 to 87238771 15 - TSS region transcription start site region 117166
Vipas39 12 87238868 to 87266256 27388 - protein coding gene VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog
Tssr117167 12 87254964 to 87254982 18 - TSS region transcription start site region 117167
Tssr117168 12 87260694 to 87260708 14 - TSS region transcription start site region 117168
Tssr117169 12 87263899 to 87263910 11 - TSS region transcription start site region 117169
Tssr114520 12 87264648 to 87264672 24 + TSS region transcription start site region 114520
Cpgi4939 12 87266079 to 87267412 1333 CpG island CpG island 4939
Tssr117170 12 87266208 to 87266219 11 - TSS region transcription start site region 117170
Tssr117171 12 87266227 to 87266301 74 - TSS region transcription start site region 117171
Ahsa1 12 87266484 to 87273998 7514 + protein coding gene AHA1, activator of heat shock protein ATPase 1
Tssr114521 12 87266696 to 87266760 64 + TSS region transcription start site region 114521
Gm47293 12 87266858 to 87266933 75 + miRNA gene predicted gene, 47293
Ism2 12 87278638 to 87299705 21067 - protein coding gene isthmin 2
Cpgi4940 12 87299130 to 87300673 1543 CpG island CpG island 4940
Sptlc2 12 87305058 to 87388355 83297 - protein coding gene serine palmitoyltransferase, long chain base subunit 2
Gm26764 12 87332488 to 87335655 3167 + lincRNA gene predicted gene, 26764
Tssr117172 12 87354145 to 87354151 6 - TSS region transcription start site region 117172
Tssr117173 12 87369017 to 87369034 17 - TSS region transcription start site region 117173
Gm48806 12 87371992 to 87372315 323 + pseudogene predicted gene, 48806
Tssr3906 12 87373904 to 87373905 1 + TSS region transcription start site region 3906
D12Mit178 12 87376578 to 87376727 149 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 178
Gm33444 12 87383582 to 87410739 27157 + lncRNA gene predicted gene, 33444
Cpgi4941 12 87387418 to 87388625 1207 CpG island CpG island 4941
Tssr114522 12 87387500 to 87387503 3 + TSS region transcription start site region 114522
Tssr117174 12 87388189 to 87388247 58 - TSS region transcription start site region 117174
Tssr117175 12 87388248 to 87388289 41 - TSS region transcription start site region 117175
Tssr117176 12 87388317 to 87388336 19 - TSS region transcription start site region 117176
Tssr114523 12 87388632 to 87388676 44 + TSS region transcription start site region 114523
Gm48873 12 87394444 to 87395548 1104 + pseudogene predicted gene, 48873
Cpgi4942 12 87408149 to 87408310 161 CpG island CpG island 4942
Tssr114524 12 87420464 to 87420468 4 + TSS region transcription start site region 114524
Gm8557 12 87420511 to 87420985 474 + pseudogene predicted gene 8557
Tssr117177 12 87421014 to 87421016 2 - TSS region transcription start site region 117177
Alkbh1 12 87428077 to 87443839 15762 - protein coding gene alkB homolog 1, histone H2A dioxygenase
Mir3068 12 87437679 to 87437757 78 - miRNA gene microRNA 3068
Gm29362 12 87437684 to 87437816 132 - lincRNA gene predicted gene 29362
2700073G19Rik 12 87442848 to 87444017 1169 - protein coding gene RIKEN cDNA 2700073G19 gene
Cpgi4943 12 87443320 to 87444036 716 CpG island CpG island 4943
Tssr117178 12 87443800 to 87443850 50 - TSS region transcription start site region 117178
Slirp 12 87443896 to 87449924 6028 + protein coding gene SRA stem-loop interacting RNA binding protein
Tssr114525 12 87443904 to 87443934 30 + TSS region transcription start site region 114525
Snw1 12 87449910 to 87472299 22389 - protein coding gene SNW domain containing 1
Tssr117179 12 87459448 to 87459486 38 - TSS region transcription start site region 117179
Cpgi4944 12 87471811 to 87472453 642 CpG island CpG island 4944
Tssr117180 12 87472267 to 87472332 65 - TSS region transcription start site region 117180
Tssr117181 12 87477197 to 87477210 13 - TSS region transcription start site region 117181