Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:85637457-86527866

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120 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Jdp2 12 85599027 to 85639878 40851 + protein coding gene Jun dimerization protein 2
Tssr117096 12 85639021 to 85639046 25 - TSS region transcription start site region 117096
Tssr114424 12 85639541 to 85639560 19 + TSS region transcription start site region 114424
Gm33312 12 85662442 to 85662868 426 + pseudogene predicted gene, 33312
Tssr114425 12 85686648 to 85686702 54 + TSS region transcription start site region 114425
Tssr114426 12 85686713 to 85686728 15 + TSS region transcription start site region 114426
Batf 12 85686720 to 85709087 22367 + protein coding gene basic leucine zipper transcription factor, ATF-like
Cpgi4902 12 85705466 to 85705890 424 CpG island CpG island 4902
Tssr117097 12 85705612 to 85705618 6 - TSS region transcription start site region 117097
Tssr117098 12 85705635 to 85705674 39 - TSS region transcription start site region 117098
Tssr114427 12 85705980 to 85705983 3 + TSS region transcription start site region 114427
Tssr114428 12 85715256 to 85715258 2 + TSS region transcription start site region 114428
n-R5s64 12 85718477 to 85718595 118 - rRNA gene nuclear encoded rRNA 5S 64
Gm47285 12 85718503 to 85718563 60 - miRNA gene predicted gene, 47285
Gm47901 12 85728457 to 85728719 262 + pseudogene predicted gene, 47901
Cpgi4903 12 85745764 to 85747382 1618 CpG island CpG island 4903
Flvcr2 12 85746539 to 85813585 67046 + protein coding gene feline leukemia virus subgroup C cellular receptor 2
Tssr114429 12 85746540 to 85746551 11 + TSS region transcription start site region 114429
Tssr114430 12 85746552 to 85746572 20 + TSS region transcription start site region 114430
Tssr114431 12 85746574 to 85746604 30 + TSS region transcription start site region 114431
Tssr117099 12 85747669 to 85747678 9 - TSS region transcription start site region 117099
Tssr117100 12 85747700 to 85747709 9 - TSS region transcription start site region 117100
Gm40478 12 85753787 to 85759526 5739 - lncRNA gene predicted gene, 40478
Tssr117101 12 85759452 to 85759461 9 - TSS region transcription start site region 117101
Tssr114432 12 85759511 to 85759537 26 + TSS region transcription start site region 114432
D12Mit256.3 12 85765408 to 85765519 111 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 256.3
D12Mit256 12 85765494 to 85765612 118 DNA segment DNA Segment, Chr 12, Massachusetts Institute of Technology 256
Tssr114433 12 85774815 to 85774830 15 + TSS region transcription start site region 114433
Tssr114434 12 85814548 to 85814552 4 + TSS region transcription start site region 114434
Erg28 12 85815448 to 85824550 9102 - protein coding gene ergosterol biosynthesis 28
Tssr117102 12 85815777 to 85815812 35 - TSS region transcription start site region 117102
Tssr117103 12 85816401 to 85816418 17 - TSS region transcription start site region 117103
Tssr117104 12 85817822 to 85817837 15 - TSS region transcription start site region 117104
Tssr117105 12 85817874 to 85817892 18 - TSS region transcription start site region 117105
Tssr117106 12 85817920 to 85817933 13 - TSS region transcription start site region 117106
Cpgi4904 12 85824467 to 85825350 883 CpG island CpG island 4904
Tssr117107 12 85824496 to 85824505 9 - TSS region transcription start site region 117107
Tssr117108 12 85824506 to 85824555 49 - TSS region transcription start site region 117108
Tssr117109 12 85824560 to 85824569 9 - TSS region transcription start site region 117109
Tssr114435 12 85824633 to 85824648 15 + TSS region transcription start site region 114435
Tssr117110 12 85824845 to 85824889 44 - TSS region transcription start site region 117110
Tssr114436 12 85824918 to 85825009 91 + TSS region transcription start site region 114436
Ttll5 12 85824920 to 86053760 228840 + protein coding gene tubulin tyrosine ligase-like family, member 5
Tssr114437 12 85904235 to 85904249 14 + TSS region transcription start site region 114437
Tssr114438 12 85956405 to 85956415 10 + TSS region transcription start site region 114438
Tssr114439 12 85956437 to 85956452 15 + TSS region transcription start site region 114439
Tssr114440 12 85960280 to 85960291 11 + TSS region transcription start site region 114440
Tssr114441 12 85960406 to 85960409 3 + TSS region transcription start site region 114441
Gm26531 12 85962598 to 85979021 16423 - antisense lncRNA gene predicted gene, 26531
Cpgi4905 12 85963950 to 85964200 250 CpG island CpG island 4905
Tssr117111 12 85973677 to 85973686 9 - TSS region transcription start site region 117111
Tssr114442 12 85987964 to 85987970 6 + TSS region transcription start site region 114442
Tssr117112 12 86042787 to 86042809 22 - TSS region transcription start site region 117112
D12Mit138 12 86055125 to 86055274 149 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 138
Tgfb3 12 86056745 to 86079041 22296 - protein coding gene transforming growth factor, beta 3
Tssr114443 12 86060963 to 86060989 26 + TSS region transcription start site region 114443
Gm37804 12 86069173 to 86069779 606 + unclassified gene predicted gene, 37804
Gm48008 12 86078644 to 86079754 1110 + unclassified non-coding RNA gene predicted gene, 48008
Cpgi4906 12 86078684 to 86079023 339 CpG island CpG island 4906
Tssr117113 12 86078800 to 86078804 4 - TSS region transcription start site region 117113
Tssr117114 12 86078903 to 86078941 38 - TSS region transcription start site region 117114
Tssr117115 12 86079019 to 86079035 16 - TSS region transcription start site region 117115
Cpgi4907 12 86079269 to 86079720 451 CpG island CpG island 4907
Cpgi4908 12 86082457 to 86082866 409 CpG island CpG island 4908
Ift43 12 86082541 to 86162459 79918 + protein coding gene intraflagellar transport 43
Tssr114444 12 86082555 to 86082603 48 + TSS region transcription start site region 114444
D12Mit206 12 86121555 to 86121661 106 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 206
Cpgi4909 12 86158797 to 86159067 270 CpG island CpG island 4909
Gm805 12 86169341 to 86195102 25761 + lincRNA gene predicted gene 805
Gm32473 12 86183411 to 86190269 6858 - lncRNA gene predicted gene, 32473
Cpgi4910 12 86211095 to 86211373 278 CpG island CpG island 4910
Gm40481 12 86215976 to 86241806 25830 - lncRNA gene predicted gene, 40481
Cpgi4911 12 86216796 to 86217019 223 CpG island CpG island 4911
Cpgi4912 12 86220737 to 86220968 231 CpG island CpG island 4912
Cpgi4913 12 86241664 to 86242503 839 CpG island CpG island 4913
Tssr117116 12 86241679 to 86241687 8 - TSS region transcription start site region 117116
Tssr114445 12 86241848 to 86241936 88 + TSS region transcription start site region 114445
Gpatch2l 12 86241858 to 86291784 49926 + protein coding gene G patch domain containing 2 like
Tssr3901 12 86242737 to 86242747 10 - TSS region transcription start site region 3901
Tssr114446 12 86275803 to 86275808 5 + TSS region transcription start site region 114446
4732487G21Rik 12 86290761 to 86306006 15245 - lincRNA gene RIKEN cDNA 4732487G21 gene
Gm32666 12 86309088 to 86311260 2172 + lncRNA gene predicted gene, 32666
Gm48101 12 86347977 to 86348097 120 + pseudogene predicted gene, 48101
D12Mit205 12 86349301 to 86349421 120 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 205
Gm40483 12 86359049 to 86361172 2123 - lncRNA gene predicted gene, 40483
Tssr114447 12 86361112 to 86361131 19 + TSS region transcription start site region 114447
Esrrb 12 86361117 to 86521628 160511 + protein coding gene estrogen related receptor, beta
Tssr114448 12 86361430 to 86361444 14 + TSS region transcription start site region 114448
Tssr114449 12 86361458 to 86361469 11 + TSS region transcription start site region 114449
Tssr114450 12 86361489 to 86361499 10 + TSS region transcription start site region 114450
Cpgi4914 12 86379770 to 86379956 186 CpG island CpG island 4914
D12Mit193 12 86381525 to 86381753 228 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 193
Cpgi4915 12 86402703 to 86403102 399 CpG island CpG island 4915
Cpgi4916 12 86421450 to 86423312 1862 CpG island CpG island 4916
Tssr114451 12 86421603 to 86421625 22 + TSS region transcription start site region 114451
Tssr114452 12 86421628 to 86421662 34 + TSS region transcription start site region 114452
Tssr114453 12 86421667 to 86421672 5 + TSS region transcription start site region 114453
Tssr114454 12 86421675 to 86421687 12 + TSS region transcription start site region 114454
Tssr114455 12 86421782 to 86421797 15 + TSS region transcription start site region 114455
Tssr114456 12 86466588 to 86466596 8 + TSS region transcription start site region 114456
Tssr117117 12 86469978 to 86469989 11 - TSS region transcription start site region 117117
Tssr117118 12 86469990 to 86470007 17 - TSS region transcription start site region 117118
Cpgi4917 12 86469996 to 86470579 583 CpG island CpG island 4917
Tssr117119 12 86470014 to 86470026 12 - TSS region transcription start site region 117119
Tssr117120 12 86470036 to 86470057 21 - TSS region transcription start site region 117120
Tssr114457 12 86470109 to 86470122 13 + TSS region transcription start site region 114457
Tssr114458 12 86470131 to 86470150 19 + TSS region transcription start site region 114458
Tssr114459 12 86470183 to 86470194 11 + TSS region transcription start site region 114459
Tssr117121 12 86478946 to 86478957 11 - TSS region transcription start site region 117121
Tssr117122 12 86490212 to 86490224 12 - TSS region transcription start site region 117122
Tssr114460 12 86493777 to 86493778 1 + TSS region transcription start site region 114460
Tssr114461 12 86504760 to 86504767 7 + TSS region transcription start site region 114461
Tssr114462 12 86504768 to 86504791 23 + TSS region transcription start site region 114462
Tssr114463 12 86505050 to 86505064 14 + TSS region transcription start site region 114463
Cpgi4918 12 86514333 to 86514654 321 CpG island CpG island 4918
Cpgi4919 12 86518793 to 86519097 304 CpG island CpG island 4919
Tssr114464 12 86519296 to 86519335 39 + TSS region transcription start site region 114464
Tssr114465 12 86520026 to 86520064 38 + TSS region transcription start site region 114465
Tssr114466 12 86520556 to 86520572 16 + TSS region transcription start site region 114466
Nociq3 12 114868033 to 86349301 -28518732 QTL nociceptive sensitivity inflammatory QTL 3