Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:85499027-85739878

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38 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr114408 12 85524653 to 85524664 11 + TSS region transcription start site region 114408
Tssr114409 12 85524669 to 85524683 14 + TSS region transcription start site region 114409
Tssr114410 12 85524689 to 85524713 24 + TSS region transcription start site region 114410
Tssr114411 12 85524715 to 85524742 27 + TSS region transcription start site region 114411
Tssr114412 12 85524831 to 85524841 10 + TSS region transcription start site region 114412
Gm32296 12 85529551 to 85541913 12362 + lincRNA gene predicted gene, 32296
D12Mit161 12 85561012 to 85561109 97 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 161
Gm32348 12 85569331 to 85585379 16048 + lncRNA gene predicted gene, 32348
D12Mit204 12 85580104 to 85580269 165 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 204
Gm47863 12 85597019 to 85599191 2172 - bidirectional promoter lncRNA gene predicted gene, 47863
Tssr114413 12 85598240 to 85598275 35 + TSS region transcription start site region 114413
Tssr114414 12 85598287 to 85598308 21 + TSS region transcription start site region 114414
Tssr114415 12 85598402 to 85598438 36 + TSS region transcription start site region 114415
Cpgi4901 12 85598530 to 85600335 1805 CpG island CpG island 4901
Tssr114416 12 85598600 to 85598607 7 + TSS region transcription start site region 114416
Tssr114417 12 85598707 to 85598735 28 + TSS region transcription start site region 114417
Jdp2 12 85599027 to 85639878 40851 + protein coding gene Jun dimerization protein 2
Tssr114418 12 85599047 to 85599090 43 + TSS region transcription start site region 114418
Tssr117095 12 85599181 to 85599243 62 - TSS region transcription start site region 117095
Tssr114419 12 85599350 to 85599362 12 + TSS region transcription start site region 114419
Tssr114420 12 85599388 to 85599407 19 + TSS region transcription start site region 114420
Tssr114421 12 85608292 to 85608304 12 + TSS region transcription start site region 114421
Tssr114422 12 85608322 to 85608340 18 + TSS region transcription start site region 114422
Tssr114423 12 85614387 to 85614390 3 + TSS region transcription start site region 114423
Tssr117096 12 85639021 to 85639046 25 - TSS region transcription start site region 117096
Tssr114424 12 85639541 to 85639560 19 + TSS region transcription start site region 114424
Gm33312 12 85662442 to 85662868 426 + pseudogene predicted gene, 33312
Tssr114425 12 85686648 to 85686702 54 + TSS region transcription start site region 114425
Tssr114426 12 85686713 to 85686728 15 + TSS region transcription start site region 114426
Batf 12 85686720 to 85709087 22367 + protein coding gene basic leucine zipper transcription factor, ATF-like
Cpgi4902 12 85705466 to 85705890 424 CpG island CpG island 4902
Tssr117097 12 85705612 to 85705618 6 - TSS region transcription start site region 117097
Tssr117098 12 85705635 to 85705674 39 - TSS region transcription start site region 117098
Tssr114427 12 85705980 to 85705983 3 + TSS region transcription start site region 114427
Tssr114428 12 85715256 to 85715258 2 + TSS region transcription start site region 114428
n-R5s64 12 85718477 to 85718595 118 - rRNA gene nuclear encoded rRNA 5S 64
Gm47285 12 85718503 to 85718563 60 - miRNA gene predicted gene, 47285
Gm47901 12 85728457 to 85728719 262 + pseudogene predicted gene, 47901