Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:85428322-85788340

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100 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm29709 12 85408104 to 85432615 24511 + lncRNA gene predicted gene, 29709
Gm40477 12 85429512 to 85436493 6981 - lincRNA gene predicted gene, 40477
Tssr117081 12 85430083 to 85430087 4 - TSS region transcription start site region 117081
Gm46370 12 85440663 to 85441091 428 - pseudogene predicted gene, 46370
Tssr114392 12 85447568 to 85447588 20 + TSS region transcription start site region 114392
Gm38543 12 85452051 to 85457204 5153 + lncRNA gene predicted gene, 38543
Tssr3893 12 85455164 to 85455175 11 - TSS region transcription start site region 3893
Tssr117082 12 85455179 to 85455192 13 - TSS region transcription start site region 117082
Cpgi4896 12 85455191 to 85455687 496 CpG island CpG island 4896
Tssr117083 12 85455207 to 85455218 11 - TSS region transcription start site region 117083
Tssr114393 12 85455565 to 85455606 41 + TSS region transcription start site region 114393
Tssr3894 12 85455613 to 85455628 15 + TSS region transcription start site region 3894
Tssr117084 12 85468642 to 85468651 9 - TSS region transcription start site region 117084
Tssr117085 12 85468663 to 85468668 5 - TSS region transcription start site region 117085
Tssr114394 12 85468855 to 85468867 12 + TSS region transcription start site region 114394
Tssr114395 12 85468944 to 85468965 21 + TSS region transcription start site region 114395
Tssr114396 12 85468973 to 85468988 15 + TSS region transcription start site region 114396
Tssr114397 12 85469007 to 85469014 7 + TSS region transcription start site region 114397
Tssr117086 12 85471868 to 85471891 23 - TSS region transcription start site region 117086
Cpgi4897 12 85472046 to 85472594 548 CpG island CpG island 4897
Tssr117087 12 85472188 to 85472203 15 - TSS region transcription start site region 117087
Tssr3895 12 85472324 to 85472345 21 + TSS region transcription start site region 3895
Tssr114398 12 85472357 to 85472372 15 + TSS region transcription start site region 114398
Tssr117088 12 85473348 to 85473351 3 - TSS region transcription start site region 117088
Cpgi4898 12 85473440 to 85475195 1755 CpG island CpG island 4898
Tssr114399 12 85473883 to 85473896 13 + TSS region transcription start site region 114399
Fos 12 85473901 to 85477269 3368 + protein coding gene FBJ osteosarcoma oncogene
Tssr114400 12 85474302 to 85474307 5 + TSS region transcription start site region 114400
Tssr3896 12 85474610 to 85474634 24 + TSS region transcription start site region 3896
Tssr114401 12 85474689 to 85474714 25 + TSS region transcription start site region 114401
Tssr114402 12 85474717 to 85474739 22 + TSS region transcription start site region 114402
Tssr114403 12 85475585 to 85475596 11 + TSS region transcription start site region 114403
Tssr3897 12 85475790 to 85475796 6 + TSS region transcription start site region 3897
Tssr117089 12 85475936 to 85475973 37 - TSS region transcription start site region 117089
Tssr114404 12 85476487 to 85476495 8 + TSS region transcription start site region 114404
Tssr114405 12 85476593 to 85476649 56 + TSS region transcription start site region 114405
Tssr3898 12 85476662 to 85476692 30 - TSS region transcription start site region 3898
Tssr3899 12 85476724 to 85476764 40 - TSS region transcription start site region 3899
Tssr117090 12 85477265 to 85477273 8 - TSS region transcription start site region 117090
D12Mit95 12 85478050 to 85478282 232 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 95
Tssr117091 12 85485791 to 85485807 16 - TSS region transcription start site region 117091
Cpgi4899 12 85485815 to 85486474 659 CpG island CpG island 4899
Tssr117092 12 85485928 to 85485939 11 - TSS region transcription start site region 117092
Tssr117093 12 85485955 to 85485966 11 - TSS region transcription start site region 117093
Tssr117094 12 85485980 to 85485994 14 - TSS region transcription start site region 117094
Tssr114406 12 85486229 to 85486249 20 + TSS region transcription start site region 114406
Tssr114407 12 85486271 to 85486290 19 + TSS region transcription start site region 114407
Cpgi4900 12 85486823 to 85487129 306 CpG island CpG island 4900
Tssr3900 12 85487841 to 85487853 12 - TSS region transcription start site region 3900
Tssr114408 12 85524653 to 85524664 11 + TSS region transcription start site region 114408
Tssr114409 12 85524669 to 85524683 14 + TSS region transcription start site region 114409
Tssr114410 12 85524689 to 85524713 24 + TSS region transcription start site region 114410
Tssr114411 12 85524715 to 85524742 27 + TSS region transcription start site region 114411
Tssr114412 12 85524831 to 85524841 10 + TSS region transcription start site region 114412
Gm32296 12 85529551 to 85541913 12362 + lincRNA gene predicted gene, 32296
D12Mit161 12 85561012 to 85561109 97 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 161
Gm32348 12 85569331 to 85585379 16048 + lncRNA gene predicted gene, 32348
D12Mit204 12 85580104 to 85580269 165 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 204
Gm47863 12 85597019 to 85599191 2172 - bidirectional promoter lncRNA gene predicted gene, 47863
Tssr114413 12 85598240 to 85598275 35 + TSS region transcription start site region 114413
Tssr114414 12 85598287 to 85598308 21 + TSS region transcription start site region 114414
Tssr114415 12 85598402 to 85598438 36 + TSS region transcription start site region 114415
Cpgi4901 12 85598530 to 85600335 1805 CpG island CpG island 4901
Tssr114416 12 85598600 to 85598607 7 + TSS region transcription start site region 114416
Tssr114417 12 85598707 to 85598735 28 + TSS region transcription start site region 114417
Jdp2 12 85599027 to 85639878 40851 + protein coding gene Jun dimerization protein 2
Tssr114418 12 85599047 to 85599090 43 + TSS region transcription start site region 114418
Tssr117095 12 85599181 to 85599243 62 - TSS region transcription start site region 117095
Tssr114419 12 85599350 to 85599362 12 + TSS region transcription start site region 114419
Tssr114420 12 85599388 to 85599407 19 + TSS region transcription start site region 114420
Tssr114421 12 85608292 to 85608304 12 + TSS region transcription start site region 114421
Tssr114422 12 85608322 to 85608340 18 + TSS region transcription start site region 114422
Tssr114423 12 85614387 to 85614390 3 + TSS region transcription start site region 114423
Tssr117096 12 85639021 to 85639046 25 - TSS region transcription start site region 117096
Tssr114424 12 85639541 to 85639560 19 + TSS region transcription start site region 114424
Gm33312 12 85662442 to 85662868 426 + pseudogene predicted gene, 33312
Tssr114425 12 85686648 to 85686702 54 + TSS region transcription start site region 114425
Tssr114426 12 85686713 to 85686728 15 + TSS region transcription start site region 114426
Batf 12 85686720 to 85709087 22367 + protein coding gene basic leucine zipper transcription factor, ATF-like
Cpgi4902 12 85705466 to 85705890 424 CpG island CpG island 4902
Tssr117097 12 85705612 to 85705618 6 - TSS region transcription start site region 117097
Tssr117098 12 85705635 to 85705674 39 - TSS region transcription start site region 117098
Tssr114427 12 85705980 to 85705983 3 + TSS region transcription start site region 114427
Tssr114428 12 85715256 to 85715258 2 + TSS region transcription start site region 114428
n-R5s64 12 85718477 to 85718595 118 - rRNA gene nuclear encoded rRNA 5S 64
Gm47285 12 85718503 to 85718563 60 - miRNA gene predicted gene, 47285
Gm47901 12 85728457 to 85728719 262 + pseudogene predicted gene, 47901
Cpgi4903 12 85745764 to 85747382 1618 CpG island CpG island 4903
Flvcr2 12 85746539 to 85813585 67046 + protein coding gene feline leukemia virus subgroup C cellular receptor 2
Tssr114429 12 85746540 to 85746551 11 + TSS region transcription start site region 114429
Tssr114430 12 85746552 to 85746572 20 + TSS region transcription start site region 114430
Tssr114431 12 85746574 to 85746604 30 + TSS region transcription start site region 114431
Tssr117099 12 85747669 to 85747678 9 - TSS region transcription start site region 117099
Tssr117100 12 85747700 to 85747709 9 - TSS region transcription start site region 117100
Gm40478 12 85753787 to 85759526 5739 - lncRNA gene predicted gene, 40478
Tssr117101 12 85759452 to 85759461 9 - TSS region transcription start site region 117101
Tssr114432 12 85759511 to 85759537 26 + TSS region transcription start site region 114432
D12Mit256.3 12 85765408 to 85765519 111 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 256.3
D12Mit256 12 85765494 to 85765612 118 DNA segment DNA Segment, Chr 12, Massachusetts Institute of Technology 256
Tssr114433 12 85774815 to 85774830 15 + TSS region transcription start site region 114433