Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:85134421-85644435

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143 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rps6kl1 12 85135249 to 85151264 16015 - protein coding gene ribosomal protein S6 kinase-like 1
Tssr117052 12 85138702 to 85138732 30 - TSS region transcription start site region 117052
Tssr117053 12 85138733 to 85138743 10 - TSS region transcription start site region 117053
Tssr117054 12 85138752 to 85138764 12 - TSS region transcription start site region 117054
Tssr117055 12 85140449 to 85140482 33 - TSS region transcription start site region 117055
Cpgi4887 12 85150811 to 85151330 519 CpG island CpG island 4887
Tssr117056 12 85151213 to 85151260 47 - TSS region transcription start site region 117056
Tssr117057 12 85151264 to 85151275 11 - TSS region transcription start site region 117057
Pgf 12 85166637 to 85177785 11148 - protein coding gene placental growth factor
Cpgi4888 12 85169370 to 85169586 216 CpG island CpG island 4888
Cpgi4889 12 85177137 to 85177671 534 CpG island CpG island 4889
Tssr117058 12 85177288 to 85177306 18 - TSS region transcription start site region 117058
Gm45930 12 85187514 to 85187805 291 - pseudogene predicted gene, 45930
Tssr117059 12 85187846 to 85187862 16 - TSS region transcription start site region 117059
Tssr114379 12 85199648 to 85199650 2 + TSS region transcription start site region 114379
Cpgi4890 12 85219040 to 85220140 1100 CpG island CpG island 4890
Tssr114380 12 85219475 to 85219546 71 + TSS region transcription start site region 114380
Eif2b2 12 85219481 to 85226628 7147 + protein coding gene eukaryotic translation initiation factor 2B, subunit 2 beta
Mlh3 12 85234520 to 85270599 36079 - protein coding gene mutL homolog 3
Mir6938 12 85245923 to 85245985 62 - miRNA gene microRNA 6938
Gm46369 12 85255527 to 85255927 400 + pseudogene predicted gene, 46369
Cpgi4891 12 85270305 to 85270814 509 CpG island CpG island 4891
Tssr117060 12 85270585 to 85270608 23 - TSS region transcription start site region 117060
Tssr117061 12 85270612 to 85270643 31 - TSS region transcription start site region 117061
Acyp1 12 85272398 to 85280447 8049 - protein coding gene acylphosphatase 1, erythrocyte (common) type
Cpgi4892 12 85279756 to 85280548 792 CpG island CpG island 4892
Tssr117062 12 85280342 to 85280347 5 - TSS region transcription start site region 117062
Tssr117063 12 85280361 to 85280435 74 - TSS region transcription start site region 117063
Tssr3890 12 85281340 to 85281344 4 + TSS region transcription start site region 3890
Cpgi4893 12 85288257 to 85288838 581 CpG island CpG island 4893
Tssr117064 12 85288419 to 85288427 8 - TSS region transcription start site region 117064
Zc2hc1c 12 85288591 to 85299358 10767 + protein coding gene zinc finger, C2HC-type containing 1C
Tssr114381 12 85288670 to 85288712 42 + TSS region transcription start site region 114381
Tssr114382 12 85289632 to 85289660 28 + TSS region transcription start site region 114382
Nek9 12 85299514 to 85339362 39848 - protein coding gene NIMA (never in mitosis gene a)-related expressed kinase 9
Tssr117065 12 85331499 to 85331502 3 - TSS region transcription start site region 117065
Cpgi4894 12 85338799 to 85339669 870 CpG island CpG island 4894
Tssr117066 12 85339316 to 85339327 11 - TSS region transcription start site region 117066
Tssr117067 12 85339346 to 85339391 45 - TSS region transcription start site region 117067
Tssr114383 12 85339430 to 85339448 18 + TSS region transcription start site region 114383
Tssr117068 12 85339498 to 85339532 34 - TSS region transcription start site region 117068
Tssr114384 12 85339696 to 85339701 5 + TSS region transcription start site region 114384
Tmed10 12 85340614 to 85374717 34103 - protein coding gene transmembrane p24 trafficking protein 10
Tssr117069 12 85341573 to 85341586 13 - TSS region transcription start site region 117069
Tssr117070 12 85341607 to 85341620 13 - TSS region transcription start site region 117070
Tssr117071 12 85344452 to 85344458 6 - TSS region transcription start site region 117071
Tssr117072 12 85344467 to 85344495 28 - TSS region transcription start site region 117072
Tssr117073 12 85350553 to 85350554 1 - TSS region transcription start site region 117073
Tssr117074 12 85350580 to 85350585 5 - TSS region transcription start site region 117074
Tssr117075 12 85350625 to 85350630 5 - TSS region transcription start site region 117075
Tssr114385 12 85351039 to 85351062 23 + TSS region transcription start site region 114385
Tssr117076 12 85351125 to 85351157 32 - TSS region transcription start site region 117076
Gm47820 12 85356584 to 85357177 593 + pseudogene predicted gene, 47820
Gm47817 12 85360493 to 85363645 3152 - unclassified gene predicted gene, 47817
Tssr117077 12 85373459 to 85373470 11 - TSS region transcription start site region 117077
Tssr117078 12 85373910 to 85373936 26 - TSS region transcription start site region 117078
Cpgi4895 12 85373975 to 85374882 907 CpG island CpG island 4895
Tssr114386 12 85374094 to 85374124 30 + TSS region transcription start site region 114386
Gm47819 12 85374117 to 85376632 2515 + antisense lncRNA gene predicted gene, 47819
Tssr114387 12 85374125 to 85374136 11 + TSS region transcription start site region 114387
Tssr3891 12 85374179 to 85374212 33 - TSS region transcription start site region 3891
Tssr114388 12 85374279 to 85374304 25 + TSS region transcription start site region 114388
Tssr117079 12 85374696 to 85374719 23 - TSS region transcription start site region 117079
Tssr114389 12 85385993 to 85386032 39 + TSS region transcription start site region 114389
Tssr114390 12 85389421 to 85389435 14 + TSS region transcription start site region 114390
Tssr114391 12 85389451 to 85389459 8 + TSS region transcription start site region 114391
Tssr117080 12 85394080 to 85394106 26 - TSS region transcription start site region 117080
Tssr3892 12 85397465 to 85397492 27 - TSS region transcription start site region 3892
Gm29709 12 85408104 to 85432615 24511 + lncRNA gene predicted gene, 29709
Gm40477 12 85429512 to 85436493 6981 - lincRNA gene predicted gene, 40477
Tssr117081 12 85430083 to 85430087 4 - TSS region transcription start site region 117081
Gm46370 12 85440663 to 85441091 428 - pseudogene predicted gene, 46370
Tssr114392 12 85447568 to 85447588 20 + TSS region transcription start site region 114392
Gm38543 12 85452051 to 85457204 5153 + lncRNA gene predicted gene, 38543
Tssr3893 12 85455164 to 85455175 11 - TSS region transcription start site region 3893
Tssr117082 12 85455179 to 85455192 13 - TSS region transcription start site region 117082
Cpgi4896 12 85455191 to 85455687 496 CpG island CpG island 4896
Tssr117083 12 85455207 to 85455218 11 - TSS region transcription start site region 117083
Tssr114393 12 85455565 to 85455606 41 + TSS region transcription start site region 114393
Tssr3894 12 85455613 to 85455628 15 + TSS region transcription start site region 3894
Tssr117084 12 85468642 to 85468651 9 - TSS region transcription start site region 117084
Tssr117085 12 85468663 to 85468668 5 - TSS region transcription start site region 117085
Tssr114394 12 85468855 to 85468867 12 + TSS region transcription start site region 114394
Tssr114395 12 85468944 to 85468965 21 + TSS region transcription start site region 114395
Tssr114396 12 85468973 to 85468988 15 + TSS region transcription start site region 114396
Tssr114397 12 85469007 to 85469014 7 + TSS region transcription start site region 114397
Tssr117086 12 85471868 to 85471891 23 - TSS region transcription start site region 117086
Cpgi4897 12 85472046 to 85472594 548 CpG island CpG island 4897
Tssr117087 12 85472188 to 85472203 15 - TSS region transcription start site region 117087
Tssr3895 12 85472324 to 85472345 21 + TSS region transcription start site region 3895
Tssr114398 12 85472357 to 85472372 15 + TSS region transcription start site region 114398
Tssr117088 12 85473348 to 85473351 3 - TSS region transcription start site region 117088
Cpgi4898 12 85473440 to 85475195 1755 CpG island CpG island 4898
Tssr114399 12 85473883 to 85473896 13 + TSS region transcription start site region 114399
Fos 12 85473901 to 85477269 3368 + protein coding gene FBJ osteosarcoma oncogene
Tssr114400 12 85474302 to 85474307 5 + TSS region transcription start site region 114400
Tssr3896 12 85474610 to 85474634 24 + TSS region transcription start site region 3896
Tssr114401 12 85474689 to 85474714 25 + TSS region transcription start site region 114401
Tssr114402 12 85474717 to 85474739 22 + TSS region transcription start site region 114402
Tssr114403 12 85475585 to 85475596 11 + TSS region transcription start site region 114403
Tssr3897 12 85475790 to 85475796 6 + TSS region transcription start site region 3897
Tssr117089 12 85475936 to 85475973 37 - TSS region transcription start site region 117089
Tssr114404 12 85476487 to 85476495 8 + TSS region transcription start site region 114404
Tssr114405 12 85476593 to 85476649 56 + TSS region transcription start site region 114405
Tssr3898 12 85476662 to 85476692 30 - TSS region transcription start site region 3898
Tssr3899 12 85476724 to 85476764 40 - TSS region transcription start site region 3899
Tssr117090 12 85477265 to 85477273 8 - TSS region transcription start site region 117090
D12Mit95 12 85478050 to 85478282 232 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 95
Tssr117091 12 85485791 to 85485807 16 - TSS region transcription start site region 117091
Cpgi4899 12 85485815 to 85486474 659 CpG island CpG island 4899
Tssr117092 12 85485928 to 85485939 11 - TSS region transcription start site region 117092
Tssr117093 12 85485955 to 85485966 11 - TSS region transcription start site region 117093
Tssr117094 12 85485980 to 85485994 14 - TSS region transcription start site region 117094
Tssr114406 12 85486229 to 85486249 20 + TSS region transcription start site region 114406
Tssr114407 12 85486271 to 85486290 19 + TSS region transcription start site region 114407
Cpgi4900 12 85486823 to 85487129 306 CpG island CpG island 4900
Tssr3900 12 85487841 to 85487853 12 - TSS region transcription start site region 3900
Tssr114408 12 85524653 to 85524664 11 + TSS region transcription start site region 114408
Tssr114409 12 85524669 to 85524683 14 + TSS region transcription start site region 114409
Tssr114410 12 85524689 to 85524713 24 + TSS region transcription start site region 114410
Tssr114411 12 85524715 to 85524742 27 + TSS region transcription start site region 114411
Tssr114412 12 85524831 to 85524841 10 + TSS region transcription start site region 114412
Gm32296 12 85529551 to 85541913 12362 + lincRNA gene predicted gene, 32296
D12Mit161 12 85561012 to 85561109 97 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 161
Gm32348 12 85569331 to 85585379 16048 + lncRNA gene predicted gene, 32348
D12Mit204 12 85580104 to 85580269 165 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 204
Gm47863 12 85597019 to 85599191 2172 - bidirectional promoter lncRNA gene predicted gene, 47863
Tssr114413 12 85598240 to 85598275 35 + TSS region transcription start site region 114413
Tssr114414 12 85598287 to 85598308 21 + TSS region transcription start site region 114414
Tssr114415 12 85598402 to 85598438 36 + TSS region transcription start site region 114415
Cpgi4901 12 85598530 to 85600335 1805 CpG island CpG island 4901
Tssr114416 12 85598600 to 85598607 7 + TSS region transcription start site region 114416
Tssr114417 12 85598707 to 85598735 28 + TSS region transcription start site region 114417
Jdp2 12 85599027 to 85639878 40851 + protein coding gene Jun dimerization protein 2
Tssr114418 12 85599047 to 85599090 43 + TSS region transcription start site region 114418
Tssr117095 12 85599181 to 85599243 62 - TSS region transcription start site region 117095
Tssr114419 12 85599350 to 85599362 12 + TSS region transcription start site region 114419
Tssr114420 12 85599388 to 85599407 19 + TSS region transcription start site region 114420
Tssr114421 12 85608292 to 85608304 12 + TSS region transcription start site region 114421
Tssr114422 12 85608322 to 85608340 18 + TSS region transcription start site region 114422
Tssr114423 12 85614387 to 85614390 3 + TSS region transcription start site region 114423
Tssr117096 12 85639021 to 85639046 25 - TSS region transcription start site region 117096
Tssr114424 12 85639541 to 85639560 19 + TSS region transcription start site region 114424