Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:8509433-9550454

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
5033421B08Rik 12 8511201 to 8562681 51480 + antisense lncRNA gene RIKEN cDNA 5033421B08 gene
Tssr112724 12 8519696 to 8519733 37 + TSS region transcription start site region 112724
Tssr112725 12 8521929 to 8521939 10 + TSS region transcription start site region 112725
Slc7a15 12 8528483 to 8599066 70583 - protein coding gene solute carrier family 7 (cationic amino acid transporter, y+ system), member 15
Tssr115716 12 8539560 to 8539614 54 - TSS region transcription start site region 115716
Tssr112726 12 8572152 to 8572166 14 + TSS region transcription start site region 112726
Gm40267 12 8603640 to 8641352 37712 - lncRNA gene predicted gene, 40267
Tssr115717 12 8637026 to 8637039 13 - TSS region transcription start site region 115717
Tssr112727 12 8637264 to 8637303 39 + TSS region transcription start site region 112727
Tssr115718 12 8640670 to 8640682 12 - TSS region transcription start site region 115718
Cpgi4397 12 8640744 to 8641302 558 CpG island CpG island 4397
Tssr115719 12 8641008 to 8641039 31 - TSS region transcription start site region 115719
Cpgi4398 12 8673789 to 8675056 1267 CpG island CpG island 4398
Tssr115720 12 8674064 to 8674094 30 - TSS region transcription start site region 115720
Tssr112728 12 8674129 to 8674150 21 + TSS region transcription start site region 112728
Pum2 12 8674134 to 8752581 78447 + protein coding gene pumilio RNA-binding family member 2
Tssr112729 12 8674235 to 8674275 40 + TSS region transcription start site region 112729
Tssr112730 12 8674345 to 8674382 37 + TSS region transcription start site region 112730
Tssr112731 12 8674391 to 8674421 30 + TSS region transcription start site region 112731
Tssr112732 12 8674429 to 8674450 21 + TSS region transcription start site region 112732
Tssr115721 12 8674630 to 8674670 40 - TSS region transcription start site region 115721
Tssr112733 12 8674701 to 8674746 45 + TSS region transcription start site region 112733
Tssr115722 12 8674832 to 8674846 14 - TSS region transcription start site region 115722
Tssr112734 12 8700365 to 8700370 5 + TSS region transcription start site region 112734
Tssr112735 12 8712988 to 8712993 5 + TSS region transcription start site region 112735
Tssr112736 12 8739677 to 8739704 27 + TSS region transcription start site region 112736
Tssr112737 12 8750115 to 8750153 38 + TSS region transcription start site region 112737
Tssr115723 12 8762066 to 8762070 4 - TSS region transcription start site region 115723
Gm4755 12 8765788 to 8771253 5465 - bidirectional promoter lncRNA gene predicted gene 4755
Cpgi4399 12 8770893 to 8773183 2290 CpG island CpG island 4399
Tssr112738 12 8771040 to 8771062 22 + TSS region transcription start site region 112738
Tssr112739 12 8771317 to 8771328 11 + TSS region transcription start site region 112739
Tssr112740 12 8771345 to 8771361 16 + TSS region transcription start site region 112740
Tssr112741 12 8771378 to 8771394 16 + TSS region transcription start site region 112741
Sdc1 12 8771396 to 8793716 22320 + protein coding gene syndecan 1
Tssr112742 12 8771405 to 8771425 20 + TSS region transcription start site region 112742
Tssr3790 12 8771430 to 8771444 14 + TSS region transcription start site region 3790
Tssr112743 12 8771448 to 8771464 16 + TSS region transcription start site region 112743
Tssr112744 12 8774569 to 8774573 4 + TSS region transcription start site region 112744
D12Mit104.1 12 8785895 to 8786025 130 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 104.1
D12Mit104 12 8786045 to 8786191 146 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 104
D12Mit104.2 12 8786129 to 8786295 166 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 104.2
Tssr112745 12 8790700 to 8790740 40 + TSS region transcription start site region 112745
Tssr112746 12 8791786 to 8791831 45 + TSS region transcription start site region 112746
Tssr112747 12 8791887 to 8791936 49 + TSS region transcription start site region 112747
Tssr112748 12 8792178 to 8792192 14 + TSS region transcription start site region 112748
Tssr112749 12 8792427 to 8792446 19 + TSS region transcription start site region 112749
Tssr112750 12 8807803 to 8807808 5 + TSS region transcription start site region 112750
Gm33418 12 8830357 to 8831248 891 - lncRNA gene predicted gene, 33418
9930038B18Rik 12 8873187 to 8893473 20286 - lincRNA gene RIKEN cDNA 9930038B18 gene
Gm33483 12 8879430 to 8912909 33479 + lncRNA gene predicted gene, 33483
Gm47391 12 8912924 to 8917479 4555 + lincRNA gene predicted gene, 47391
Tssr115724 12 8916452 to 8916463 11 - TSS region transcription start site region 115724
Cpgi4400 12 8921398 to 8922580 1182 CpG island CpG island 4400
Tssr112751 12 8921598 to 8921671 73 + TSS region transcription start site region 112751
Laptm4a 12 8921664 to 8938742 17078 + protein coding gene lysosomal-associated protein transmembrane 4A
Tssr112752 12 8921687 to 8921704 17 + TSS region transcription start site region 112752
Tssr112753 12 8921707 to 8921710 3 + TSS region transcription start site region 112753
Tssr115725 12 8921844 to 8921873 29 - TSS region transcription start site region 115725
Tssr112754 12 8922017 to 8922028 11 + TSS region transcription start site region 112754
Tssr112755 12 8922042 to 8922054 12 + TSS region transcription start site region 112755
Tssr112756 12 8922061 to 8922117 56 + TSS region transcription start site region 112756
Tssr112757 12 8928148 to 8928166 18 + TSS region transcription start site region 112757
Tssr112758 12 8928232 to 8928237 5 + TSS region transcription start site region 112758
Tssr112759 12 8932387 to 8932401 14 + TSS region transcription start site region 112759
Tssr112760 12 8934930 to 8934942 12 + TSS region transcription start site region 112760
Tssr112761 12 8936007 to 8936039 32 + TSS region transcription start site region 112761
Tssr112762 12 8937428 to 8937449 21 + TSS region transcription start site region 112762
Tssr112763 12 8938450 to 8938465 15 + TSS region transcription start site region 112763
Cpgi4401 12 8947721 to 8948359 638 CpG island CpG island 4401
Matn3 12 8947929 to 8972028 24099 + protein coding gene matrilin 3
Tssr112764 12 8947962 to 8947980 18 + TSS region transcription start site region 112764
Tssr112765 12 8947993 to 8948004 11 + TSS region transcription start site region 112765
Cpgi4402 12 8973710 to 8974300 590 CpG island CpG island 4402
Wdr35 12 8973992 to 9028848 54856 + protein coding gene WD repeat domain 35
Tssr112766 12 8974003 to 8974079 76 + TSS region transcription start site region 112766
Tssr112767 12 8974828 to 8974857 29 + TSS region transcription start site region 112767
D12Mit267 12 8984688 to 8984887 199 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 267
1700113P08Rik 12 9029433 to 9030454 1021 unclassified gene RIKEN cDNA 1700113P08 gene
Ttc32 12 9029448 to 9038650 9202 + protein coding gene tetratricopeptide repeat domain 32
Cpgi4403 12 9029895 to 9030617 722 CpG island CpG island 4403
Tssr112768 12 9029982 to 9030012 30 + TSS region transcription start site region 112768
Tssr112769 12 9030015 to 9030045 30 + TSS region transcription start site region 112769
Gm46323 12 9371426 to 9415113 43687 + lincRNA gene predicted gene, 46323
Gm7099 12 9429547 to 9430100 553 + pseudogene predicted gene 7099
Gm36096 12 9454781 to 9456338 1557 + pseudogene predicted gene, 36096
Gm18696 12 9473101 to 9473374 273 - pseudogene predicted gene, 18696
Tssr112770 12 9485403 to 9485407 4 + TSS region transcription start site region 112770
Gm48762 12 9494005 to 9496908 2903 - lincRNA gene predicted gene, 48762
Gm48764 12 9503584 to 9509637 6053 - lincRNA gene predicted gene, 48764