Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:84301508-84681533

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ptgr2 12 84285237 to 84315832 30595 + protein coding gene prostaglandin reductase 2
Gm47484 12 84313854 to 84317076 3222 - bidirectional promoter lncRNA gene predicted gene, 47484
Cpgi4866 12 84316548 to 84317727 1179 CpG island CpG island 4866
Tssr114335 12 84316830 to 84316865 35 + TSS region transcription start site region 114335
Zfp410 12 84316852 to 84343723 26871 + protein coding gene zinc finger protein 410
Tssr114336 12 84317091 to 84317101 10 + TSS region transcription start site region 114336
Tssr114337 12 84317102 to 84317147 45 + TSS region transcription start site region 114337
Gm20958 12 84334184 to 84334629 445 - pseudogene predicted gene, 20958
Fam161b 12 84345309 to 84361833 16524 - protein coding gene family with sequence similarity 161, member B
Cpgi4867 12 84361606 to 84362524 918 CpG island CpG island 4867
Tssr114338 12 84361636 to 84361643 7 + TSS region transcription start site region 114338
Coq6 12 84361756 to 84373796 12040 + protein coding gene coenzyme Q6 monooxygenase
Tssr116998 12 84361782 to 84361797 15 - TSS region transcription start site region 116998
Tssr116999 12 84361802 to 84361838 36 - TSS region transcription start site region 116999
Tssr114339 12 84362001 to 84362018 17 + TSS region transcription start site region 114339
Tssr114340 12 84362029 to 84362056 27 + TSS region transcription start site region 114340
Entpd5 12 84373875 to 84409029 35154 - protein coding gene ectonucleoside triphosphate diphosphohydrolase 5
Tssr117000 12 84382488 to 84382554 66 - TSS region transcription start site region 117000
Tssr117001 12 84382557 to 84382568 11 - TSS region transcription start site region 117001
Tssr117002 12 84392851 to 84392874 23 - TSS region transcription start site region 117002
Tssr117003 12 84399613 to 84399624 11 - TSS region transcription start site region 117003
Tssr117004 12 84399758 to 84399768 10 - TSS region transcription start site region 117004
Tssr117005 12 84400851 to 84400900 49 - TSS region transcription start site region 117005
Tssr117006 12 84400911 to 84400925 14 - TSS region transcription start site region 117006
Tssr117007 12 84400929 to 84400946 17 - TSS region transcription start site region 117007
Tssr117008 12 84400962 to 84400973 11 - TSS region transcription start site region 117008
Cpgi4868 12 84408365 to 84409528 1163 CpG island CpG island 4868
Tssr117009 12 84408973 to 84408983 10 - TSS region transcription start site region 117009
Tssr117010 12 84408991 to 84409034 43 - TSS region transcription start site region 117010
Tssr114341 12 84409039 to 84409102 63 + TSS region transcription start site region 114341
Bbof1 12 84409048 to 84441763 32715 + protein coding gene basal body orientation factor 1
Tssr114342 12 84409106 to 84409128 22 + TSS region transcription start site region 114342
Tssr114343 12 84409137 to 84409152 15 + TSS region transcription start site region 114343
Tssr114344 12 84409166 to 84409176 10 + TSS region transcription start site region 114344
Tssr114345 12 84411160 to 84411163 3 + TSS region transcription start site region 114345
Cpgi4869 12 84417161 to 84417921 760 CpG island CpG island 4869
Rnf113a2 12 84417200 to 84418578 1378 + protein coding gene ring finger protein 113A2
Tssr114346 12 84417235 to 84417254 19 + TSS region transcription start site region 114346
Tssr114347 12 84417256 to 84417300 44 + TSS region transcription start site region 114347
Tssr114348 12 84417306 to 84417321 15 + TSS region transcription start site region 114348
Aldh6a1 12 84430717 to 84451004 20287 - protein coding gene aldehyde dehydrogenase family 6, subfamily A1
Tssr117011 12 84436472 to 84436512 40 - TSS region transcription start site region 117011
Tssr117012 12 84448975 to 84449007 32 - TSS region transcription start site region 117012
Cpgi4870 12 84450589 to 84451589 1000 CpG island CpG island 4870
Tssr117013 12 84450944 to 84451018 74 - TSS region transcription start site region 117013
Lin52 12 84451422 to 84546145 94723 + protein coding gene lin-52 homolog (C. elegans)
Tssr114349 12 84451485 to 84451518 33 + TSS region transcription start site region 114349
Cpgi4871 12 84452034 to 84452211 177 CpG island CpG island 4871
Tssr117014 12 84546155 to 84546194 39 - TSS region transcription start site region 117014
Tssr117015 12 84553035 to 84553084 49 - TSS region transcription start site region 117015
Tssr114350 12 84569821 to 84569835 14 + TSS region transcription start site region 114350
Vsx2 12 84569828 to 84595457 25629 + protein coding gene visual system homeobox 2
Cpgi4872 12 84569906 to 84570490 584 CpG island CpG island 4872
Cpgi4873 12 84570681 to 84572183 1502 CpG island CpG island 4873
Tssr114351 12 84571502 to 84571545 43 + TSS region transcription start site region 114351
Tssr117016 12 84583145 to 84583153 8 - TSS region transcription start site region 117016
Cpgi4874 12 84589893 to 84590464 571 CpG island CpG island 4874
Abcd4 12 84602531 to 84617483 14952 - protein coding gene ATP-binding cassette, sub-family D (ALD), member 4
Cpgi4875 12 84613825 to 84614223 398 CpG island CpG island 4875
Cpgi4876 12 84617105 to 84617583 478 CpG island CpG island 4876
Tssr117017 12 84617326 to 84617419 93 - TSS region transcription start site region 117017
Tssr114352 12 84640930 to 84640942 12 + TSS region transcription start site region 114352
Tssr114353 12 84640947 to 84640995 48 + TSS region transcription start site region 114353
Vrtn 12 84641019 to 84651455 10436 + protein coding gene vertebrae development associated
Tssr114354 12 84641394 to 84641409 15 + TSS region transcription start site region 114354
Cpgi4877 12 84648418 to 84648623 205 CpG island CpG island 4877
Cpgi4878 12 84649091 to 84649457 366 CpG island CpG island 4878
Cpgi4879 12 84650055 to 84650262 207 CpG island CpG island 4879
Syndig1l 12 84677277 to 84698831 21554 - protein coding gene synapse differentiation inducing 1 like
Gm48573 12 84677300 to 84677604 304 + antisense lncRNA gene predicted gene, 48573