Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:84131422-84866145

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165 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dnal1 12 84114279 to 84143517 29238 + protein coding gene dynein, axonemal, light chain 1
Tssr114322 12 84132536 to 84132557 21 + TSS region transcription start site region 114322
Pnma1 12 84146131 to 84148489 2358 - protein coding gene paraneoplastic antigen MA1
Cpgi4860 12 84147979 to 84148704 725 CpG island CpG island 4860
Tssr116979 12 84148213 to 84148227 14 - TSS region transcription start site region 116979
Tssr116980 12 84148449 to 84148499 50 - TSS region transcription start site region 116980
D12Mit254 12 84148890 to 84149000 110 DNA segment DNA Segment, Chr 12, Massachusetts Institute of Technology 254
Elmsan1 12 84149176 to 84218881 69705 - protein coding gene ELM2 and Myb/SANT-like domain containing 1
Tssr114323 12 84151219 to 84151235 16 + TSS region transcription start site region 114323
Gm46368 12 84152989 to 84156491 3502 + lncRNA gene predicted gene, 46368
Cpgi4861 12 84154830 to 84155011 181 CpG island CpG island 4861
Gm40476 12 84158351 to 84160759 2408 + lncRNA gene predicted gene, 40476
Gm40475 12 84163028 to 84169109 6081 + lncRNA gene predicted gene, 40475
D12Dcr8 12 84170445 to 84170540 95 DNA segment DNA Segment, Chr 12, Derry C. Roopenian 8
Tssr116981 12 84172403 to 84172407 4 - TSS region transcription start site region 116981
Tssr116982 12 84173451 to 84173476 25 - TSS region transcription start site region 116982
Tssr116983 12 84174934 to 84174943 9 - TSS region transcription start site region 116983
Cpgi4862 12 84175576 to 84176006 430 CpG island CpG island 4862
Tssr116984 12 84175639 to 84175659 20 - TSS region transcription start site region 116984
Tssr116985 12 84177371 to 84177402 31 - TSS region transcription start site region 116985
Tssr3889 12 84177420 to 84177445 25 - TSS region transcription start site region 3889
Gm19327 12 84184536 to 84187806 3270 - unclassified gene predicted gene, 19327
D12Mit160 12 84188540 to 84188671 131 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 160
Cpgi4863 12 84192592 to 84194443 1851 CpG island CpG island 4863
Tssr116986 12 84193740 to 84193758 18 - TSS region transcription start site region 116986
Tssr116987 12 84193770 to 84193801 31 - TSS region transcription start site region 116987
Tssr116988 12 84193828 to 84193862 34 - TSS region transcription start site region 116988
Tssr116989 12 84193945 to 84193965 20 - TSS region transcription start site region 116989
Tssr116990 12 84193987 to 84193998 11 - TSS region transcription start site region 116990
Tssr116991 12 84194007 to 84194067 60 - TSS region transcription start site region 116991
Gm31513 12 84195969 to 84199580 3611 + antisense lncRNA gene predicted gene, 31513
Tssr114324 12 84202893 to 84202927 34 + TSS region transcription start site region 114324
Tssr114325 12 84206906 to 84206925 19 + TSS region transcription start site region 114325
Tssr114326 12 84206967 to 84206980 13 + TSS region transcription start site region 114326
Gm47447 12 84214365 to 84216137 1772 - sense intronic lncRNA gene predicted gene, 47447
Tssr114327 12 84217679 to 84217690 11 + TSS region transcription start site region 114327
Cpgi4864 12 84218340 to 84219399 1059 CpG island CpG island 4864
Gm46319 12 84218454 to 84219747 1293 + protein coding gene predicted gene, 46319
Tssr114328 12 84218574 to 84218615 41 + TSS region transcription start site region 114328
Tssr116992 12 84218812 to 84218828 16 - TSS region transcription start site region 116992
Tssr116993 12 84218835 to 84218890 55 - TSS region transcription start site region 116993
Tssr116994 12 84219066 to 84219088 22 - TSS region transcription start site region 116994
Tssr116995 12 84219101 to 84219120 19 - TSS region transcription start site region 116995
Tssr116996 12 84226179 to 84226209 30 - TSS region transcription start site region 116996
Tssr114329 12 84226655 to 84226675 20 + TSS region transcription start site region 114329
Tssr114330 12 84235843 to 84235853 10 + TSS region transcription start site region 114330
Tssr116997 12 84236474 to 84236485 11 - TSS region transcription start site region 116997
Tssr114331 12 84236571 to 84236591 20 + TSS region transcription start site region 114331
Tssr114332 12 84243412 to 84243427 15 + TSS region transcription start site region 114332
Gm5436 12 84258331 to 84258973 642 - pseudogene predicted pseudogene 5436
Cpgi4865 12 84285082 to 84285592 510 CpG island CpG island 4865
Ptgr2 12 84285237 to 84315832 30595 + protein coding gene prostaglandin reductase 2
Tssr114333 12 84285336 to 84285414 78 + TSS region transcription start site region 114333
Tssr114334 12 84296219 to 84296222 3 + TSS region transcription start site region 114334
Gm47484 12 84313854 to 84317076 3222 - bidirectional promoter lncRNA gene predicted gene, 47484
Cpgi4866 12 84316548 to 84317727 1179 CpG island CpG island 4866
Tssr114335 12 84316830 to 84316865 35 + TSS region transcription start site region 114335
Zfp410 12 84316852 to 84343723 26871 + protein coding gene zinc finger protein 410
Tssr114336 12 84317091 to 84317101 10 + TSS region transcription start site region 114336
Tssr114337 12 84317102 to 84317147 45 + TSS region transcription start site region 114337
Gm20958 12 84334184 to 84334629 445 - pseudogene predicted gene, 20958
Fam161b 12 84345309 to 84361833 16524 - protein coding gene family with sequence similarity 161, member B
Cpgi4867 12 84361606 to 84362524 918 CpG island CpG island 4867
Tssr114338 12 84361636 to 84361643 7 + TSS region transcription start site region 114338
Coq6 12 84361756 to 84373796 12040 + protein coding gene coenzyme Q6 monooxygenase
Tssr116998 12 84361782 to 84361797 15 - TSS region transcription start site region 116998
Tssr116999 12 84361802 to 84361838 36 - TSS region transcription start site region 116999
Tssr114339 12 84362001 to 84362018 17 + TSS region transcription start site region 114339
Tssr114340 12 84362029 to 84362056 27 + TSS region transcription start site region 114340
Entpd5 12 84373875 to 84409029 35154 - protein coding gene ectonucleoside triphosphate diphosphohydrolase 5
Tssr117000 12 84382488 to 84382554 66 - TSS region transcription start site region 117000
Tssr117001 12 84382557 to 84382568 11 - TSS region transcription start site region 117001
Tssr117002 12 84392851 to 84392874 23 - TSS region transcription start site region 117002
Tssr117003 12 84399613 to 84399624 11 - TSS region transcription start site region 117003
Tssr117004 12 84399758 to 84399768 10 - TSS region transcription start site region 117004
Tssr117005 12 84400851 to 84400900 49 - TSS region transcription start site region 117005
Tssr117006 12 84400911 to 84400925 14 - TSS region transcription start site region 117006
Tssr117007 12 84400929 to 84400946 17 - TSS region transcription start site region 117007
Tssr117008 12 84400962 to 84400973 11 - TSS region transcription start site region 117008
Cpgi4868 12 84408365 to 84409528 1163 CpG island CpG island 4868
Tssr117009 12 84408973 to 84408983 10 - TSS region transcription start site region 117009
Tssr117010 12 84408991 to 84409034 43 - TSS region transcription start site region 117010
Tssr114341 12 84409039 to 84409102 63 + TSS region transcription start site region 114341
Bbof1 12 84409048 to 84441763 32715 + protein coding gene basal body orientation factor 1
Tssr114342 12 84409106 to 84409128 22 + TSS region transcription start site region 114342
Tssr114343 12 84409137 to 84409152 15 + TSS region transcription start site region 114343
Tssr114344 12 84409166 to 84409176 10 + TSS region transcription start site region 114344
Tssr114345 12 84411160 to 84411163 3 + TSS region transcription start site region 114345
Cpgi4869 12 84417161 to 84417921 760 CpG island CpG island 4869
Rnf113a2 12 84417200 to 84418578 1378 + protein coding gene ring finger protein 113A2
Tssr114346 12 84417235 to 84417254 19 + TSS region transcription start site region 114346
Tssr114347 12 84417256 to 84417300 44 + TSS region transcription start site region 114347
Tssr114348 12 84417306 to 84417321 15 + TSS region transcription start site region 114348
Aldh6a1 12 84430717 to 84451004 20287 - protein coding gene aldehyde dehydrogenase family 6, subfamily A1
Tssr117011 12 84436472 to 84436512 40 - TSS region transcription start site region 117011
Tssr117012 12 84448975 to 84449007 32 - TSS region transcription start site region 117012
Cpgi4870 12 84450589 to 84451589 1000 CpG island CpG island 4870
Tssr117013 12 84450944 to 84451018 74 - TSS region transcription start site region 117013
Lin52 12 84451422 to 84546145 94723 + protein coding gene lin-52 homolog (C. elegans)
Tssr114349 12 84451485 to 84451518 33 + TSS region transcription start site region 114349
Cpgi4871 12 84452034 to 84452211 177 CpG island CpG island 4871
Tssr117014 12 84546155 to 84546194 39 - TSS region transcription start site region 117014
Tssr117015 12 84553035 to 84553084 49 - TSS region transcription start site region 117015
Tssr114350 12 84569821 to 84569835 14 + TSS region transcription start site region 114350
Vsx2 12 84569828 to 84595457 25629 + protein coding gene visual system homeobox 2
Cpgi4872 12 84569906 to 84570490 584 CpG island CpG island 4872
Cpgi4873 12 84570681 to 84572183 1502 CpG island CpG island 4873
Tssr114351 12 84571502 to 84571545 43 + TSS region transcription start site region 114351
Tssr117016 12 84583145 to 84583153 8 - TSS region transcription start site region 117016
Cpgi4874 12 84589893 to 84590464 571 CpG island CpG island 4874
Abcd4 12 84602531 to 84617483 14952 - protein coding gene ATP-binding cassette, sub-family D (ALD), member 4
Cpgi4875 12 84613825 to 84614223 398 CpG island CpG island 4875
Cpgi4876 12 84617105 to 84617583 478 CpG island CpG island 4876
Tssr117017 12 84617326 to 84617419 93 - TSS region transcription start site region 117017
Tssr114352 12 84640930 to 84640942 12 + TSS region transcription start site region 114352
Tssr114353 12 84640947 to 84640995 48 + TSS region transcription start site region 114353
Vrtn 12 84641019 to 84651455 10436 + protein coding gene vertebrae development associated
Tssr114354 12 84641394 to 84641409 15 + TSS region transcription start site region 114354
Cpgi4877 12 84648418 to 84648623 205 CpG island CpG island 4877
Cpgi4878 12 84649091 to 84649457 366 CpG island CpG island 4878
Cpgi4879 12 84650055 to 84650262 207 CpG island CpG island 4879
Syndig1l 12 84677277 to 84698831 21554 - protein coding gene synapse differentiation inducing 1 like
Gm48573 12 84677300 to 84677604 304 + antisense lncRNA gene predicted gene, 48573
Cpgi4880 12 84698043 to 84699118 1075 CpG island CpG island 4880
Tssr117018 12 84698769 to 84698819 50 - TSS region transcription start site region 117018
D12Mit238 12 84754429 to 84754552 123 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 238
Npc2 12 84754559 to 84773112 18553 - protein coding gene NPC intracellular cholesterol transporter 2
Tssr117019 12 84755529 to 84755558 29 - TSS region transcription start site region 117019
Tssr114355 12 84756490 to 84756493 3 + TSS region transcription start site region 114355
Tssr117020 12 84756529 to 84756597 68 - TSS region transcription start site region 117020
Tssr117021 12 84756680 to 84756729 49 - TSS region transcription start site region 117021
Tssr117022 12 84757063 to 84757077 14 - TSS region transcription start site region 117022
Tssr114356 12 84760714 to 84760797 83 + TSS region transcription start site region 114356
Tssr117023 12 84760757 to 84760774 17 - TSS region transcription start site region 117023
Tssr117024 12 84760785 to 84760849 64 - TSS region transcription start site region 117024
Tssr117025 12 84760854 to 84760873 19 - TSS region transcription start site region 117025
Tssr114357 12 84761569 to 84761615 46 + TSS region transcription start site region 114357
Tssr117026 12 84762535 to 84762541 6 - TSS region transcription start site region 117026
Tssr114358 12 84762796 to 84762808 12 + TSS region transcription start site region 114358
Tssr117027 12 84765303 to 84765366 63 - TSS region transcription start site region 117027
Tssr117028 12 84766769 to 84766773 4 - TSS region transcription start site region 117028
Cpgi4881 12 84772706 to 84773780 1074 CpG island CpG island 4881
Tssr117029 12 84772873 to 84772881 8 - TSS region transcription start site region 117029
Tssr117030 12 84772888 to 84772910 22 - TSS region transcription start site region 117030
Tssr117031 12 84772925 to 84772951 26 - TSS region transcription start site region 117031
Tssr117032 12 84772954 to 84772961 7 - TSS region transcription start site region 117032
Tssr117033 12 84773053 to 84773064 11 - TSS region transcription start site region 117033
Tssr117034 12 84773073 to 84773083 10 - TSS region transcription start site region 117034
Tssr117035 12 84773087 to 84773091 4 - TSS region transcription start site region 117035
Isca2 12 84773251 to 84775088 1837 + protein coding gene iron-sulfur cluster assembly 2
Tssr114359 12 84773251 to 84773261 10 + TSS region transcription start site region 114359
Tssr114360 12 84773262 to 84773319 57 + TSS region transcription start site region 114360
Tssr114361 12 84773321 to 84773335 14 + TSS region transcription start site region 114361
Ltbp2 12 84783212 to 84876532 93320 - protein coding gene latent transforming growth factor beta binding protein 2
Cpgi4882 12 84784569 to 84785178 609 CpG island CpG island 4882
Tssr117036 12 84785487 to 84785518 31 - TSS region transcription start site region 117036
Tssr117037 12 84787150 to 84787158 8 - TSS region transcription start site region 117037
Tssr117038 12 84801788 to 84801832 44 - TSS region transcription start site region 117038
Tssr114362 12 84807025 to 84807037 12 + TSS region transcription start site region 114362
Tssr114363 12 84807052 to 84807066 14 + TSS region transcription start site region 114363
Tssr114364 12 84807078 to 84807094 16 + TSS region transcription start site region 114364
Tssr117039 12 84830073 to 84830090 17 - TSS region transcription start site region 117039
Tssr114365 12 84855441 to 84855471 30 + TSS region transcription start site region 114365
D12Mit228 12 84859192 to 84859295 103 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 228
D12Mit94 12 84859199 to 84859340 141 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 94