Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:83988945-84398965

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108 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Acot2 12 83987861 to 83993873 6012 + protein coding gene acyl-CoA thioesterase 2
Tssr114306 12 83993257 to 83993261 4 + TSS region transcription start site region 114306
Tssr114307 12 83993400 to 83993413 13 + TSS region transcription start site region 114307
Cpgi4853 12 84009265 to 84010179 914 CpG island CpG island 4853
Tssr114308 12 84009481 to 84009503 22 + TSS region transcription start site region 114308
Acot1 12 84009502 to 84017670 8168 + protein coding gene acyl-CoA thioesterase 1
Gm40474 12 84018327 to 84029448 11121 - lncRNA gene predicted gene, 40474
Gm47943 12 84023808 to 84024087 279 + pseudogene predicted gene, 47943
Acot4 12 84037428 to 84044723 7295 + protein coding gene acyl-CoA thioesterase 4
Cpgi4854 12 84038214 to 84039092 878 CpG island CpG island 4854
Tssr114309 12 84038363 to 84038379 16 + TSS region transcription start site region 114309
Tssr114310 12 84038388 to 84038435 47 + TSS region transcription start site region 114310
Gm49366 12 84038935 to 84058613 19678 + protein coding gene predicted gene, 49366
4732463B04Rik 12 84039469 to 84053807 14338 - antisense lncRNA gene RIKEN cDNA 4732463B04 gene
Tssr114311 12 84042515 to 84042527 12 + TSS region transcription start site region 114311
Tssr114312 12 84052114 to 84052145 31 + TSS region transcription start site region 114312
Acot3 12 84052144 to 84060402 8258 + protein coding gene acyl-CoA thioesterase 3
Tssr114313 12 84052147 to 84052157 10 + TSS region transcription start site region 114313
Tssr114314 12 84052175 to 84052184 9 + TSS region transcription start site region 114314
Cpgi4855 12 84053230 to 84054322 1092 CpG island CpG island 4855
Tssr114315 12 84053349 to 84053383 34 + TSS region transcription start site region 114315
Tssr114316 12 84053439 to 84053450 11 + TSS region transcription start site region 114316
Cpgi4856 12 84062359 to 84062677 318 CpG island CpG island 4856
Cpgi4857 12 84069290 to 84070232 942 CpG island CpG island 4857
Acot5 12 84069325 to 84076020 6695 + protein coding gene acyl-CoA thioesterase 5
Tssr3888 12 84085052 to 84085055 3 + TSS region transcription start site region 3888
Gm8385 12 84087015 to 84087640 625 - pseudogene predicted gene 8385
Acot6 12 84100654 to 84109783 9129 + protein coding gene acyl-CoA thioesterase 6
Cpgi4858 12 84100709 to 84101696 987 CpG island CpG island 4858
Tssr114317 12 84100740 to 84100791 51 + TSS region transcription start site region 114317
Tssr114318 12 84100797 to 84100815 18 + TSS region transcription start site region 114318
Cpgi4859 12 84114256 to 84114602 346 CpG island CpG island 4859
Dnal1 12 84114279 to 84143517 29238 + protein coding gene dynein, axonemal, light chain 1
Tssr114319 12 84114299 to 84114310 11 + TSS region transcription start site region 114319
Tssr114320 12 84114321 to 84114383 62 + TSS region transcription start site region 114320
Tssr114321 12 84126241 to 84126246 5 + TSS region transcription start site region 114321
Tssr114322 12 84132536 to 84132557 21 + TSS region transcription start site region 114322
Pnma1 12 84146131 to 84148489 2358 - protein coding gene paraneoplastic antigen MA1
Cpgi4860 12 84147979 to 84148704 725 CpG island CpG island 4860
Tssr116979 12 84148213 to 84148227 14 - TSS region transcription start site region 116979
Tssr116980 12 84148449 to 84148499 50 - TSS region transcription start site region 116980
D12Mit254 12 84148890 to 84149000 110 DNA segment DNA Segment, Chr 12, Massachusetts Institute of Technology 254
Elmsan1 12 84149176 to 84218881 69705 - protein coding gene ELM2 and Myb/SANT-like domain containing 1
Tssr114323 12 84151219 to 84151235 16 + TSS region transcription start site region 114323
Gm46368 12 84152989 to 84156491 3502 + lncRNA gene predicted gene, 46368
Cpgi4861 12 84154830 to 84155011 181 CpG island CpG island 4861
Gm40476 12 84158351 to 84160759 2408 + lncRNA gene predicted gene, 40476
Gm40475 12 84163028 to 84169109 6081 + lncRNA gene predicted gene, 40475
D12Dcr8 12 84170445 to 84170540 95 DNA segment DNA Segment, Chr 12, Derry C. Roopenian 8
Tssr116981 12 84172403 to 84172407 4 - TSS region transcription start site region 116981
Tssr116982 12 84173451 to 84173476 25 - TSS region transcription start site region 116982
Tssr116983 12 84174934 to 84174943 9 - TSS region transcription start site region 116983
Cpgi4862 12 84175576 to 84176006 430 CpG island CpG island 4862
Tssr116984 12 84175639 to 84175659 20 - TSS region transcription start site region 116984
Tssr116985 12 84177371 to 84177402 31 - TSS region transcription start site region 116985
Tssr3889 12 84177420 to 84177445 25 - TSS region transcription start site region 3889
Gm19327 12 84184536 to 84187806 3270 - unclassified gene predicted gene, 19327
D12Mit160 12 84188540 to 84188671 131 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 160
Cpgi4863 12 84192592 to 84194443 1851 CpG island CpG island 4863
Tssr116986 12 84193740 to 84193758 18 - TSS region transcription start site region 116986
Tssr116987 12 84193770 to 84193801 31 - TSS region transcription start site region 116987
Tssr116988 12 84193828 to 84193862 34 - TSS region transcription start site region 116988
Tssr116989 12 84193945 to 84193965 20 - TSS region transcription start site region 116989
Tssr116990 12 84193987 to 84193998 11 - TSS region transcription start site region 116990
Tssr116991 12 84194007 to 84194067 60 - TSS region transcription start site region 116991
Gm31513 12 84195969 to 84199580 3611 + antisense lncRNA gene predicted gene, 31513
Tssr114324 12 84202893 to 84202927 34 + TSS region transcription start site region 114324
Tssr114325 12 84206906 to 84206925 19 + TSS region transcription start site region 114325
Tssr114326 12 84206967 to 84206980 13 + TSS region transcription start site region 114326
Gm47447 12 84214365 to 84216137 1772 - sense intronic lncRNA gene predicted gene, 47447
Tssr114327 12 84217679 to 84217690 11 + TSS region transcription start site region 114327
Cpgi4864 12 84218340 to 84219399 1059 CpG island CpG island 4864
Gm46319 12 84218454 to 84219747 1293 + protein coding gene predicted gene, 46319
Tssr114328 12 84218574 to 84218615 41 + TSS region transcription start site region 114328
Tssr116992 12 84218812 to 84218828 16 - TSS region transcription start site region 116992
Tssr116993 12 84218835 to 84218890 55 - TSS region transcription start site region 116993
Tssr116994 12 84219066 to 84219088 22 - TSS region transcription start site region 116994
Tssr116995 12 84219101 to 84219120 19 - TSS region transcription start site region 116995
Tssr116996 12 84226179 to 84226209 30 - TSS region transcription start site region 116996
Tssr114329 12 84226655 to 84226675 20 + TSS region transcription start site region 114329
Tssr114330 12 84235843 to 84235853 10 + TSS region transcription start site region 114330
Tssr116997 12 84236474 to 84236485 11 - TSS region transcription start site region 116997
Tssr114331 12 84236571 to 84236591 20 + TSS region transcription start site region 114331
Tssr114332 12 84243412 to 84243427 15 + TSS region transcription start site region 114332
Gm5436 12 84258331 to 84258973 642 - pseudogene predicted pseudogene 5436
Cpgi4865 12 84285082 to 84285592 510 CpG island CpG island 4865
Ptgr2 12 84285237 to 84315832 30595 + protein coding gene prostaglandin reductase 2
Tssr114333 12 84285336 to 84285414 78 + TSS region transcription start site region 114333
Tssr114334 12 84296219 to 84296222 3 + TSS region transcription start site region 114334
Gm47484 12 84313854 to 84317076 3222 - bidirectional promoter lncRNA gene predicted gene, 47484
Cpgi4866 12 84316548 to 84317727 1179 CpG island CpG island 4866
Tssr114335 12 84316830 to 84316865 35 + TSS region transcription start site region 114335
Zfp410 12 84316852 to 84343723 26871 + protein coding gene zinc finger protein 410
Tssr114336 12 84317091 to 84317101 10 + TSS region transcription start site region 114336
Tssr114337 12 84317102 to 84317147 45 + TSS region transcription start site region 114337
Gm20958 12 84334184 to 84334629 445 - pseudogene predicted gene, 20958
Fam161b 12 84345309 to 84361833 16524 - protein coding gene family with sequence similarity 161, member B
Cpgi4867 12 84361606 to 84362524 918 CpG island CpG island 4867
Tssr114338 12 84361636 to 84361643 7 + TSS region transcription start site region 114338
Coq6 12 84361756 to 84373796 12040 + protein coding gene coenzyme Q6 monooxygenase
Tssr116998 12 84361782 to 84361797 15 - TSS region transcription start site region 116998
Tssr116999 12 84361802 to 84361838 36 - TSS region transcription start site region 116999
Tssr114339 12 84362001 to 84362018 17 + TSS region transcription start site region 114339
Tssr114340 12 84362029 to 84362056 27 + TSS region transcription start site region 114340
Entpd5 12 84373875 to 84409029 35154 - protein coding gene ectonucleoside triphosphate diphosphohydrolase 5
Tssr117000 12 84382488 to 84382554 66 - TSS region transcription start site region 117000
Tssr117001 12 84382557 to 84382568 11 - TSS region transcription start site region 117001
Tssr117002 12 84392851 to 84392874 23 - TSS region transcription start site region 117002