Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000


Click here to work with the entire chromosomal region 12:83962359-84162677

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57 genes found.
Gene symbol Chromo-
some
Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Heatr4 12 83954499 to 83984852 30353 - protein coding gene HEAT repeat containing 4
Tssr116977 12 83984821 to 83984843 22 - TSS region transcription start site region 116977
Tssr116978 12 83984849 to 83984856 7 - TSS region transcription start site region 116978
Tssr114300 12 83987653 to 83987676 23 + TSS region transcription start site region 114300
Cpgi4852 12 83987679 to 83988719 1040 CpG island CpG island 4852
Tssr114301 12 83987684 to 83987725 41 + TSS region transcription start site region 114301
Tssr114302 12 83987730 to 83987753 23 + TSS region transcription start site region 114302
Tssr114303 12 83987800 to 83987827 27 + TSS region transcription start site region 114303
Tssr114304 12 83987854 to 83987898 44 + TSS region transcription start site region 114304
Acot2 12 83987861 to 83993873 6012 + protein coding gene acyl-CoA thioesterase 2
Tssr114305 12 83987907 to 83987918 11 + TSS region transcription start site region 114305
Tssr114306 12 83993257 to 83993261 4 + TSS region transcription start site region 114306
Tssr114307 12 83993400 to 83993413 13 + TSS region transcription start site region 114307
Cpgi4853 12 84009265 to 84010179 914 CpG island CpG island 4853
Tssr114308 12 84009481 to 84009503 22 + TSS region transcription start site region 114308
Acot1 12 84009502 to 84017670 8168 + protein coding gene acyl-CoA thioesterase 1
Gm40474 12 84018327 to 84053777 35450 - lncRNA gene predicted gene, 40474
Gm47943 12 84023808 to 84024087 279 + pseudogene predicted gene, 47943
Acot4 12 84037254 to 84044723 7469 + protein coding gene acyl-CoA thioesterase 4
Cpgi4854 12 84038214 to 84039092 878 CpG island CpG island 4854
Tssr114309 12 84038363 to 84038379 16 + TSS region transcription start site region 114309
Tssr114310 12 84038388 to 84038435 47 + TSS region transcription start site region 114310
Gm49366 12 84038935 to 84058613 19678 + protein coding gene predicted gene, 49366
4732463B04Rik 12 84039469 to 84053807 14338 - lncRNA gene RIKEN cDNA 4732463B04 gene
Tssr114311 12 84042515 to 84042527 12 + TSS region transcription start site region 114311
Tssr114312 12 84052114 to 84052145 31 + TSS region transcription start site region 114312
Acot3 12 84052144 to 84060400 8256 + protein coding gene acyl-CoA thioesterase 3
Tssr114313 12 84052147 to 84052157 10 + TSS region transcription start site region 114313
Tssr114314 12 84052175 to 84052184 9 + TSS region transcription start site region 114314
Cpgi4855 12 84053230 to 84054322 1092 CpG island CpG island 4855
Tssr114315 12 84053349 to 84053383 34 + TSS region transcription start site region 114315
Tssr114316 12 84053439 to 84053450 11 + TSS region transcription start site region 114316
Cpgi4856 12 84062359 to 84062677 318 CpG island CpG island 4856
Cpgi4857 12 84069290 to 84070232 942 CpG island CpG island 4857
Acot5 12 84069325 to 84076020 6695 + protein coding gene acyl-CoA thioesterase 5
Tssr3888 12 84085052 to 84085055 3 + TSS region transcription start site region 3888
Gm8385 12 84087015 to 84087640 625 - pseudogene predicted gene 8385
Femd7 12 84100000 to 9500000 -74600000 QTL femur midshaft diameter 7, 10 week
Acot6 12 84100654 to 84109783 9129 + protein coding gene acyl-CoA thioesterase 6
Cpgi4858 12 84100709 to 84101696 987 CpG island CpG island 4858
Tssr114317 12 84100740 to 84100791 51 + TSS region transcription start site region 114317
Tssr114318 12 84100797 to 84100815 18 + TSS region transcription start site region 114318
Cpgi4859 12 84114256 to 84114602 346 CpG island CpG island 4859
Dnal1 12 84114279 to 84143517 29238 + protein coding gene dynein, axonemal, light chain 1
Tssr114319 12 84114299 to 84114310 11 + TSS region transcription start site region 114319
Tssr114320 12 84114321 to 84114383 62 + TSS region transcription start site region 114320
Tssr114321 12 84126241 to 84126246 5 + TSS region transcription start site region 114321
Tssr114322 12 84132536 to 84132557 21 + TSS region transcription start site region 114322
Pnma1 12 84146131 to 84148489 2358 - protein coding gene paraneoplastic antigen MA1
Cpgi4860 12 84147979 to 84148704 725 CpG island CpG island 4860
Tssr116979 12 84148213 to 84148227 14 - TSS region transcription start site region 116979
Tssr116980 12 84148449 to 84148499 50 - TSS region transcription start site region 116980
D12Mit254 12 84148890 to 84149000 110 DNA segment DNA Segment, Chr 12, Massachusetts Institute of Technology 254
Mideas 12 84149176 to 84218881 69705 - protein coding gene mitotic deacetylase associated SANT domain protein
Tssr114323 12 84151219 to 84151235 16 + TSS region transcription start site region 114323
Cpgi4861 12 84154830 to 84155011 181 CpG island CpG island 4861
Gm40476 12 84158340 to 84160759 2419 + lncRNA gene predicted gene, 40476