Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:83716999-84138096

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84 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Psen1 12 83688152 to 83735199 47047 + protein coding gene presenilin 1
Gm47666 12 83730062 to 83731457 1395 - antisense lncRNA gene predicted gene, 47666
Tssr116969 12 83731447 to 83731473 26 - TSS region transcription start site region 116969
Tssr114291 12 83731570 to 83731591 21 + TSS region transcription start site region 114291
Gm18592 12 83742762 to 83743037 275 + pseudogene predicted gene, 18592
Gm47681 12 83758944 to 83759346 402 + pseudogene predicted gene, 47681
Tssr114292 12 83763628 to 83763648 20 + TSS region transcription start site region 114292
Cpgi4847 12 83763634 to 83764209 575 CpG island CpG island 4847
Papln 12 83763634 to 83792382 28748 + protein coding gene papilin, proteoglycan-like sulfated glycoprotein
Tssr114293 12 83763656 to 83763671 15 + TSS region transcription start site region 114293
Cpgi4848 12 83771741 to 83772265 524 CpG island CpG island 4848
Cpgi4849 12 83781879 to 83782058 179 CpG island CpG island 4849
Numb 12 83794034 to 83921934 127900 - protein coding gene NUMB endocytic adaptor protein
Gm46367 12 83819656 to 83831936 12280 + lncRNA gene predicted gene, 46367
Tssr116970 12 83819943 to 83819946 3 - TSS region transcription start site region 116970
Tssr116971 12 83827618 to 83827645 27 - TSS region transcription start site region 116971
Gm47748 12 83848050 to 83848391 341 + pseudogene predicted gene, 47748
Tssr116972 12 83864307 to 83864309 2 - TSS region transcription start site region 116972
Gm3791 12 83875115 to 83875882 767 - pseudogene predicted gene 3791
D12Mit159 12 83880713 to 83880823 110 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 159
2010015B12Rik 12 83897467 to 83898219 752 unclassified gene RIKEN cDNA 2010015B12 gene
B230327D02Rik 12 83911350 to 83915275 3925 unclassified gene RIKEN cDNA B230327D02 gene
Cpgi4850 12 83921002 to 83922358 1356 CpG island CpG island 4850
Tssr116973 12 83921809 to 83921898 89 - TSS region transcription start site region 116973
Tssr116974 12 83921899 to 83921912 13 - TSS region transcription start site region 116974
Gm31386 12 83921999 to 83933096 11097 + lncRNA gene predicted gene, 31386
Gm26571 12 83945209 to 83951355 6146 - antisense lncRNA gene predicted gene, 26571
Tssr114294 12 83947521 to 83947552 31 + TSS region transcription start site region 114294
Tssr114295 12 83950019 to 83950032 13 + TSS region transcription start site region 114295
Tssr114296 12 83950054 to 83950071 17 + TSS region transcription start site region 114296
Tssr114297 12 83950083 to 83950090 7 + TSS region transcription start site region 114297
Cpgi4851 12 83950340 to 83952148 1808 CpG island CpG island 4851
Riox1 12 83950608 to 83952951 2343 + protein coding gene ribosomal oxygenase 1
Tssr114298 12 83950634 to 83950705 71 + TSS region transcription start site region 114298
Tssr114299 12 83950813 to 83950844 31 + TSS region transcription start site region 114299
Tssr116975 12 83951553 to 83951568 15 - TSS region transcription start site region 116975
Heatr4 12 83954499 to 83984852 30353 - protein coding gene HEAT repeat containing 4
Tssr116976 12 83956062 to 83956068 6 - TSS region transcription start site region 116976
Tssr116977 12 83984821 to 83984843 22 - TSS region transcription start site region 116977
Tssr116978 12 83984849 to 83984856 7 - TSS region transcription start site region 116978
Tssr114300 12 83987653 to 83987676 23 + TSS region transcription start site region 114300
Cpgi4852 12 83987679 to 83988719 1040 CpG island CpG island 4852
Tssr114301 12 83987684 to 83987725 41 + TSS region transcription start site region 114301
Tssr114302 12 83987730 to 83987753 23 + TSS region transcription start site region 114302
Tssr114303 12 83987800 to 83987827 27 + TSS region transcription start site region 114303
Tssr114304 12 83987854 to 83987898 44 + TSS region transcription start site region 114304
Acot2 12 83987861 to 83993873 6012 + protein coding gene acyl-CoA thioesterase 2
Tssr114305 12 83987907 to 83987918 11 + TSS region transcription start site region 114305
Tssr114306 12 83993257 to 83993261 4 + TSS region transcription start site region 114306
Tssr114307 12 83993400 to 83993413 13 + TSS region transcription start site region 114307
Cpgi4853 12 84009265 to 84010179 914 CpG island CpG island 4853
Tssr114308 12 84009481 to 84009503 22 + TSS region transcription start site region 114308
Acot1 12 84009502 to 84017670 8168 + protein coding gene acyl-CoA thioesterase 1
Gm40474 12 84018327 to 84029448 11121 - lncRNA gene predicted gene, 40474
Gm47943 12 84023808 to 84024087 279 + pseudogene predicted gene, 47943
Acot4 12 84037428 to 84044723 7295 + protein coding gene acyl-CoA thioesterase 4
Cpgi4854 12 84038214 to 84039092 878 CpG island CpG island 4854
Tssr114309 12 84038363 to 84038379 16 + TSS region transcription start site region 114309
Tssr114310 12 84038388 to 84038435 47 + TSS region transcription start site region 114310
Gm49366 12 84038935 to 84058613 19678 + protein coding gene predicted gene, 49366
4732463B04Rik 12 84039469 to 84053807 14338 - antisense lncRNA gene RIKEN cDNA 4732463B04 gene
Tssr114311 12 84042515 to 84042527 12 + TSS region transcription start site region 114311
Tssr114312 12 84052114 to 84052145 31 + TSS region transcription start site region 114312
Acot3 12 84052144 to 84060402 8258 + protein coding gene acyl-CoA thioesterase 3
Tssr114313 12 84052147 to 84052157 10 + TSS region transcription start site region 114313
Tssr114314 12 84052175 to 84052184 9 + TSS region transcription start site region 114314
Cpgi4855 12 84053230 to 84054322 1092 CpG island CpG island 4855
Tssr114315 12 84053349 to 84053383 34 + TSS region transcription start site region 114315
Tssr114316 12 84053439 to 84053450 11 + TSS region transcription start site region 114316
Cpgi4856 12 84062359 to 84062677 318 CpG island CpG island 4856
Cpgi4857 12 84069290 to 84070232 942 CpG island CpG island 4857
Acot5 12 84069325 to 84076020 6695 + protein coding gene acyl-CoA thioesterase 5
Tssr3888 12 84085052 to 84085055 3 + TSS region transcription start site region 3888
Gm8385 12 84087015 to 84087640 625 - pseudogene predicted gene 8385
Acot6 12 84100654 to 84109783 9129 + protein coding gene acyl-CoA thioesterase 6
Cpgi4858 12 84100709 to 84101696 987 CpG island CpG island 4858
Tssr114317 12 84100740 to 84100791 51 + TSS region transcription start site region 114317
Tssr114318 12 84100797 to 84100815 18 + TSS region transcription start site region 114318
Cpgi4859 12 84114256 to 84114602 346 CpG island CpG island 4859
Dnal1 12 84114279 to 84143517 29238 + protein coding gene dynein, axonemal, light chain 1
Tssr114319 12 84114299 to 84114310 11 + TSS region transcription start site region 114319
Tssr114320 12 84114321 to 84114383 62 + TSS region transcription start site region 114320
Tssr114321 12 84126241 to 84126246 5 + TSS region transcription start site region 114321
Tssr114322 12 84132536 to 84132557 21 + TSS region transcription start site region 114322