Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:8315057-8645060

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51 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hs1bp3 12 8313433 to 8343824 30391 + protein coding gene HCLS1 binding protein 3
Tssr112716 12 8332201 to 8332214 13 + TSS region transcription start site region 112716
Tssr112717 12 8332218 to 8332228 10 + TSS region transcription start site region 112717
Gm48071 12 8335460 to 8336717 1257 - antisense lncRNA gene predicted gene, 48071
Tssr112718 12 8342932 to 8342955 23 + TSS region transcription start site region 112718
Tssr3784 12 8345144 to 8345154 10 + TSS region transcription start site region 3784
Tssr3785 12 8351365 to 8351375 10 - TSS region transcription start site region 3785
Tssr115702 12 8351381 to 8351403 22 - TSS region transcription start site region 115702
Tssr112719 12 8351540 to 8351545 5 + TSS region transcription start site region 112719
Tssr112720 12 8351571 to 8351576 5 + TSS region transcription start site region 112720
D12Mit183 12 8351876 to 8352145 269 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 183
Gm33134 12 8363712 to 8365800 2088 + lncRNA gene predicted gene, 33134
Tssr112721 12 8393284 to 8393287 3 + TSS region transcription start site region 112721
Gm48075 12 8394209 to 8400356 6147 + lincRNA gene predicted gene, 48075
Cpgi4395 12 8410971 to 8411281 310 CpG island CpG island 4395
Tssr112722 12 8433147 to 8433151 4 + TSS region transcription start site region 112722
Gm48076 12 8453504 to 8454918 1414 - unclassified gene predicted gene, 48076
D12Mit151 12 8467941 to 8468082 141 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 151
BC106175 12 8478874 to 8482157 3283 - unclassified gene cDNA sequence BC106175
Tssr115703 12 8480057 to 8480060 3 - TSS region transcription start site region 115703
Tssr115704 12 8480068 to 8480071 3 - TSS region transcription start site region 115704
Tssr115705 12 8480200 to 8480208 8 - TSS region transcription start site region 115705
Tssr115706 12 8480212 to 8480229 17 - TSS region transcription start site region 115706
Tssr115707 12 8480244 to 8480252 8 - TSS region transcription start site region 115707
Tssr3786 12 8480307 to 8480312 5 - TSS region transcription start site region 3786
Tssr3787 12 8480561 to 8480562 1 - TSS region transcription start site region 3787
Tssr115708 12 8482106 to 8482107 1 - TSS region transcription start site region 115708
Tssr115709 12 8482120 to 8482129 9 - TSS region transcription start site region 115709
Tssr115710 12 8482134 to 8482139 5 - TSS region transcription start site region 115710
Tssr115711 12 8482153 to 8482216 63 - TSS region transcription start site region 115711
Tssr115712 12 8496796 to 8496800 4 - TSS region transcription start site region 115712
Rhob 12 8497758 to 8499985 2227 - protein coding gene ras homolog family member B
Tssr115713 12 8498280 to 8498313 33 - TSS region transcription start site region 115713
Tssr115714 12 8498666 to 8498682 16 - TSS region transcription start site region 115714
Cpgi4396 12 8498744 to 8500488 1744 CpG island CpG island 4396
Tssr115715 12 8500001 to 8500017 16 - TSS region transcription start site region 115715
Tssr3788 12 8500184 to 8500216 32 + TSS region transcription start site region 3788
Tssr112723 12 8500253 to 8500278 25 + TSS region transcription start site region 112723
Tssr3789 12 8500325 to 8500332 7 + TSS region transcription start site region 3789
5033421B08Rik 12 8511201 to 8562681 51480 + antisense lncRNA gene RIKEN cDNA 5033421B08 gene
Tssr112724 12 8519696 to 8519733 37 + TSS region transcription start site region 112724
Tssr112725 12 8521929 to 8521939 10 + TSS region transcription start site region 112725
Slc7a15 12 8528483 to 8599066 70583 - protein coding gene solute carrier family 7 (cationic amino acid transporter, y+ system), member 15
Tssr115716 12 8539560 to 8539614 54 - TSS region transcription start site region 115716
Tssr112726 12 8572152 to 8572166 14 + TSS region transcription start site region 112726
Gm40267 12 8603640 to 8641352 37712 - lncRNA gene predicted gene, 40267
Tssr115717 12 8637026 to 8637039 13 - TSS region transcription start site region 115717
Tssr112727 12 8637264 to 8637303 39 + TSS region transcription start site region 112727
Tssr115718 12 8640670 to 8640682 12 - TSS region transcription start site region 115718
Cpgi4397 12 8640744 to 8641302 558 CpG island CpG island 4397
Tssr115719 12 8641008 to 8641039 31 - TSS region transcription start site region 115719