Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:8302152-8842166

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92 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi4393 12 8301312 to 8302537 1225 CpG island CpG island 4393
Cpgi4394 12 8313150 to 8314069 919 CpG island CpG island 4394
Tssr112714 12 8313425 to 8313454 29 + TSS region transcription start site region 112714
Hs1bp3 12 8313433 to 8343824 30391 + protein coding gene HCLS1 binding protein 3
Tssr112715 12 8313455 to 8313462 7 + TSS region transcription start site region 112715
Tssr112716 12 8332201 to 8332214 13 + TSS region transcription start site region 112716
Tssr112717 12 8332218 to 8332228 10 + TSS region transcription start site region 112717
Gm48071 12 8335460 to 8336717 1257 - antisense lncRNA gene predicted gene, 48071
Tssr112718 12 8342932 to 8342955 23 + TSS region transcription start site region 112718
Tssr3784 12 8345144 to 8345154 10 + TSS region transcription start site region 3784
Tssr3785 12 8351365 to 8351375 10 - TSS region transcription start site region 3785
Tssr115702 12 8351381 to 8351403 22 - TSS region transcription start site region 115702
Tssr112719 12 8351540 to 8351545 5 + TSS region transcription start site region 112719
Tssr112720 12 8351571 to 8351576 5 + TSS region transcription start site region 112720
D12Mit183 12 8351876 to 8352145 269 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 183
Gm33134 12 8363712 to 8365800 2088 + lncRNA gene predicted gene, 33134
Tssr112721 12 8393284 to 8393287 3 + TSS region transcription start site region 112721
Gm48075 12 8394209 to 8400356 6147 + lincRNA gene predicted gene, 48075
Cpgi4395 12 8410971 to 8411281 310 CpG island CpG island 4395
Tssr112722 12 8433147 to 8433151 4 + TSS region transcription start site region 112722
Gm48076 12 8453504 to 8454918 1414 - unclassified gene predicted gene, 48076
D12Mit151 12 8467941 to 8468082 141 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 151
BC106175 12 8478874 to 8482157 3283 - unclassified gene cDNA sequence BC106175
Tssr115703 12 8480057 to 8480060 3 - TSS region transcription start site region 115703
Tssr115704 12 8480068 to 8480071 3 - TSS region transcription start site region 115704
Tssr115705 12 8480200 to 8480208 8 - TSS region transcription start site region 115705
Tssr115706 12 8480212 to 8480229 17 - TSS region transcription start site region 115706
Tssr115707 12 8480244 to 8480252 8 - TSS region transcription start site region 115707
Tssr3786 12 8480307 to 8480312 5 - TSS region transcription start site region 3786
Tssr3787 12 8480561 to 8480562 1 - TSS region transcription start site region 3787
Tssr115708 12 8482106 to 8482107 1 - TSS region transcription start site region 115708
Tssr115709 12 8482120 to 8482129 9 - TSS region transcription start site region 115709
Tssr115710 12 8482134 to 8482139 5 - TSS region transcription start site region 115710
Tssr115711 12 8482153 to 8482216 63 - TSS region transcription start site region 115711
Tssr115712 12 8496796 to 8496800 4 - TSS region transcription start site region 115712
Rhob 12 8497758 to 8499985 2227 - protein coding gene ras homolog family member B
Tssr115713 12 8498280 to 8498313 33 - TSS region transcription start site region 115713
Tssr115714 12 8498666 to 8498682 16 - TSS region transcription start site region 115714
Cpgi4396 12 8498744 to 8500488 1744 CpG island CpG island 4396
Tssr115715 12 8500001 to 8500017 16 - TSS region transcription start site region 115715
Tssr3788 12 8500184 to 8500216 32 + TSS region transcription start site region 3788
Tssr112723 12 8500253 to 8500278 25 + TSS region transcription start site region 112723
Tssr3789 12 8500325 to 8500332 7 + TSS region transcription start site region 3789
5033421B08Rik 12 8511201 to 8562681 51480 + antisense lncRNA gene RIKEN cDNA 5033421B08 gene
Tssr112724 12 8519696 to 8519733 37 + TSS region transcription start site region 112724
Tssr112725 12 8521929 to 8521939 10 + TSS region transcription start site region 112725
Slc7a15 12 8528483 to 8599066 70583 - protein coding gene solute carrier family 7 (cationic amino acid transporter, y+ system), member 15
Tssr115716 12 8539560 to 8539614 54 - TSS region transcription start site region 115716
Tssr112726 12 8572152 to 8572166 14 + TSS region transcription start site region 112726
Gm40267 12 8603640 to 8641352 37712 - lncRNA gene predicted gene, 40267
Tssr115717 12 8637026 to 8637039 13 - TSS region transcription start site region 115717
Tssr112727 12 8637264 to 8637303 39 + TSS region transcription start site region 112727
Tssr115718 12 8640670 to 8640682 12 - TSS region transcription start site region 115718
Cpgi4397 12 8640744 to 8641302 558 CpG island CpG island 4397
Tssr115719 12 8641008 to 8641039 31 - TSS region transcription start site region 115719
Cpgi4398 12 8673789 to 8675056 1267 CpG island CpG island 4398
Tssr115720 12 8674064 to 8674094 30 - TSS region transcription start site region 115720
Tssr112728 12 8674129 to 8674150 21 + TSS region transcription start site region 112728
Pum2 12 8674134 to 8752581 78447 + protein coding gene pumilio RNA-binding family member 2
Tssr112729 12 8674235 to 8674275 40 + TSS region transcription start site region 112729
Tssr112730 12 8674345 to 8674382 37 + TSS region transcription start site region 112730
Tssr112731 12 8674391 to 8674421 30 + TSS region transcription start site region 112731
Tssr112732 12 8674429 to 8674450 21 + TSS region transcription start site region 112732
Tssr115721 12 8674630 to 8674670 40 - TSS region transcription start site region 115721
Tssr112733 12 8674701 to 8674746 45 + TSS region transcription start site region 112733
Tssr115722 12 8674832 to 8674846 14 - TSS region transcription start site region 115722
Tssr112734 12 8700365 to 8700370 5 + TSS region transcription start site region 112734
Tssr112735 12 8712988 to 8712993 5 + TSS region transcription start site region 112735
Tssr112736 12 8739677 to 8739704 27 + TSS region transcription start site region 112736
Tssr112737 12 8750115 to 8750153 38 + TSS region transcription start site region 112737
Tssr115723 12 8762066 to 8762070 4 - TSS region transcription start site region 115723
Gm4755 12 8765788 to 8771253 5465 - bidirectional promoter lncRNA gene predicted gene 4755
Cpgi4399 12 8770893 to 8773183 2290 CpG island CpG island 4399
Tssr112738 12 8771040 to 8771062 22 + TSS region transcription start site region 112738
Tssr112739 12 8771317 to 8771328 11 + TSS region transcription start site region 112739
Tssr112740 12 8771345 to 8771361 16 + TSS region transcription start site region 112740
Tssr112741 12 8771378 to 8771394 16 + TSS region transcription start site region 112741
Sdc1 12 8771396 to 8793716 22320 + protein coding gene syndecan 1
Tssr112742 12 8771405 to 8771425 20 + TSS region transcription start site region 112742
Tssr3790 12 8771430 to 8771444 14 + TSS region transcription start site region 3790
Tssr112743 12 8771448 to 8771464 16 + TSS region transcription start site region 112743
Tssr112744 12 8774569 to 8774573 4 + TSS region transcription start site region 112744
D12Mit104.1 12 8785895 to 8786025 130 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 104.1
D12Mit104 12 8786045 to 8786191 146 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 104
D12Mit104.2 12 8786129 to 8786295 166 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 104.2
Tssr112745 12 8790700 to 8790740 40 + TSS region transcription start site region 112745
Tssr112746 12 8791786 to 8791831 45 + TSS region transcription start site region 112746
Tssr112747 12 8791887 to 8791936 49 + TSS region transcription start site region 112747
Tssr112748 12 8792178 to 8792192 14 + TSS region transcription start site region 112748
Tssr112749 12 8792427 to 8792446 19 + TSS region transcription start site region 112749
Tssr112750 12 8807803 to 8807808 5 + TSS region transcription start site region 112750
Gm33418 12 8830357 to 8831248 891 - lncRNA gene predicted gene, 33418