Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:81264812-81535123

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33 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Slc8a3 12 81197915 to 81333180 135265 - protein coding gene solute carrier family 8 (sodium/calcium exchanger), member 3
Tssr116916 12 81287110 to 81287111 1 - TSS region transcription start site region 116916
Cpgi4827 12 81331985 to 81333611 1626 CpG island CpG island 4827
Tssr116917 12 81333129 to 81333220 91 - TSS region transcription start site region 116917
Tssr116918 12 81333523 to 81333552 29 - TSS region transcription start site region 116918
Gm46365 12 81333835 to 81341365 7530 + lncRNA gene predicted gene, 46365
Gm20498 12 81358860 to 81532905 174045 - protein coding gene predicted gene 20498
Cox16 12 81359026 to 81485127 126101 - protein coding gene cytochrome c oxidase assembly protein 16
Gm3695 12 81372213 to 81373221 1008 - pseudogene predicted gene 3695
Tssr116919 12 81373292 to 81373293 1 - TSS region transcription start site region 116919
Gm4787 12 81376991 to 81379464 2473 - protein coding gene predicted gene 4787
Hspe1-ps2 12 81399812 to 81400123 311 + pseudogene heat shock protein 1 (chaperonin 10), pseudogene 2
Adam4 12 81419443 to 81421946 2503 - protein coding gene a disintegrin and metallopeptidase domain 4
Tssr116920 12 81421910 to 81421921 11 - TSS region transcription start site region 116920
Tssr3881 12 81421931 to 81421936 5 - TSS region transcription start site region 3881
BB042571 12 81446278 to 81448878 2600 unclassified gene expressed sequence BB042571
Tssr116921 12 81456926 to 81456927 1 - TSS region transcription start site region 116921
Tssr116922 12 81472264 to 81472276 12 - TSS region transcription start site region 116922
Tssr116923 12 81475348 to 81475355 7 - TSS region transcription start site region 116923
Cpgi4828 12 81484659 to 81485235 576 CpG island CpG island 4828
Tssr116924 12 81485027 to 81485065 38 - TSS region transcription start site region 116924
Tssr116925 12 81485075 to 81485140 65 - TSS region transcription start site region 116925
Gm28370 12 81492199 to 81497015 4816 + antisense lncRNA gene predicted gene 28370
Synj2bp 12 81497941 to 81532911 34970 - protein coding gene synaptojanin 2 binding protein
Gm24853 12 81501240 to 81501360 120 + snoRNA gene predicted gene, 24853
Tssr116926 12 81511058 to 81511083 25 - TSS region transcription start site region 116926
C630016I17Rik 12 81518109 to 81521662 3553 unclassified gene RIKEN cDNA C630016I17 gene
Gm17191 12 81532035 to 81533358 1323 - unclassified non-coding RNA gene predicted gene 17191
Cpgi4829 12 81532331 to 81533024 693 CpG island CpG island 4829
Tssr116927 12 81532811 to 81532818 7 - TSS region transcription start site region 116927
Tssr116928 12 81532840 to 81532925 85 - TSS region transcription start site region 116928
Tssr114196 12 81532950 to 81532990 40 + TSS region transcription start site region 114196
6530401F13Rik 12 81532968 to 81557458 24490 + unclassified non-coding RNA gene RIKEN cDNA 6530401F13 gene