Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:81103209-82033240

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96 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Smoc1 12 81026808 to 81186414 159606 + protein coding gene SPARC related modular calcium binding 1
Gm18031 12 81102827 to 81103506 679 + pseudogene predicted gene, 18031
Tssr114193 12 81152421 to 81152432 11 + TSS region transcription start site region 114193
Tssr114194 12 81152479 to 81152497 18 + TSS region transcription start site region 114194
Mir3067 12 81166151 to 81166234 83 + miRNA gene microRNA 3067
Tssr114195 12 81183879 to 81183889 10 + TSS region transcription start site region 114195
Slc8a3 12 81197915 to 81333180 135265 - protein coding gene solute carrier family 8 (sodium/calcium exchanger), member 3
Gm3693 12 81227580 to 81242492 14912 + antisense lncRNA gene predicted gene 3693
2310068G24Rik 12 81243457 to 81245070 1613 unclassified gene RIKEN cDNA 2310068G24 gene
Tssr116916 12 81287110 to 81287111 1 - TSS region transcription start site region 116916
Cpgi4827 12 81331985 to 81333611 1626 CpG island CpG island 4827
Tssr116917 12 81333129 to 81333220 91 - TSS region transcription start site region 116917
Tssr116918 12 81333523 to 81333552 29 - TSS region transcription start site region 116918
Gm46365 12 81333835 to 81341365 7530 + lncRNA gene predicted gene, 46365
Gm20498 12 81358860 to 81532905 174045 - protein coding gene predicted gene 20498
Cox16 12 81359026 to 81485127 126101 - protein coding gene cytochrome c oxidase assembly protein 16
Gm3695 12 81372213 to 81373221 1008 - pseudogene predicted gene 3695
Tssr116919 12 81373292 to 81373293 1 - TSS region transcription start site region 116919
Gm4787 12 81376991 to 81379464 2473 - protein coding gene predicted gene 4787
Hspe1-ps2 12 81399812 to 81400123 311 + pseudogene heat shock protein 1 (chaperonin 10), pseudogene 2
Adam4 12 81419443 to 81421946 2503 - protein coding gene a disintegrin and metallopeptidase domain 4
Tssr116920 12 81421910 to 81421921 11 - TSS region transcription start site region 116920
Tssr3881 12 81421931 to 81421936 5 - TSS region transcription start site region 3881
BB042571 12 81446278 to 81448878 2600 unclassified gene expressed sequence BB042571
Tssr116921 12 81456926 to 81456927 1 - TSS region transcription start site region 116921
Tssr116922 12 81472264 to 81472276 12 - TSS region transcription start site region 116922
Tssr116923 12 81475348 to 81475355 7 - TSS region transcription start site region 116923
Cpgi4828 12 81484659 to 81485235 576 CpG island CpG island 4828
Tssr116924 12 81485027 to 81485065 38 - TSS region transcription start site region 116924
Tssr116925 12 81485075 to 81485140 65 - TSS region transcription start site region 116925
Gm28370 12 81492199 to 81497015 4816 + antisense lncRNA gene predicted gene 28370
Synj2bp 12 81497941 to 81532911 34970 - protein coding gene synaptojanin 2 binding protein
Gm24853 12 81501240 to 81501360 120 + snoRNA gene predicted gene, 24853
Tssr116926 12 81511058 to 81511083 25 - TSS region transcription start site region 116926
C630016I17Rik 12 81518109 to 81521662 3553 unclassified gene RIKEN cDNA C630016I17 gene
Gm17191 12 81532035 to 81533358 1323 - unclassified non-coding RNA gene predicted gene 17191
Cpgi4829 12 81532331 to 81533024 693 CpG island CpG island 4829
Tssr116927 12 81532811 to 81532818 7 - TSS region transcription start site region 116927
Tssr116928 12 81532840 to 81532925 85 - TSS region transcription start site region 116928
Tssr114196 12 81532950 to 81532990 40 + TSS region transcription start site region 114196
6530401F13Rik 12 81532968 to 81557458 24490 + unclassified non-coding RNA gene RIKEN cDNA 6530401F13 gene
Adam21 12 81558584 to 81568474 9890 - protein coding gene a disintegrin and metallopeptidase domain 21
Tssr116929 12 81568192 to 81568204 12 - TSS region transcription start site region 116929
Tssr116930 12 81568209 to 81568240 31 - TSS region transcription start site region 116930
Tssr116931 12 81568256 to 81568265 9 - TSS region transcription start site region 116931
Med6 12 81573557 to 81595008 21451 - protein coding gene mediator complex subunit 6
7030407O06Rik 12 81576248 to 81578964 2716 unclassified gene RIKEN cDNA 7030407O06 gene
Gm16572 12 81587799 to 81589640 1841 + antisense lncRNA gene predicted gene 16572
Gm16570 12 81589435 to 81589870 435 - pseudogene predicted gene 16570
Cpgi4830 12 81594769 to 81595273 504 CpG island CpG island 4830
Tssr116932 12 81594964 to 81595020 56 - TSS region transcription start site region 116932
D12Mit255 12 81596315 to 81596435 120 DNA segment DNA Segment, Chr 12, Massachusetts Institute of Technology 255
Cpgi4831 12 81630591 to 81632107 1516 CpG island CpG island 4831
Tssr114197 12 81631046 to 81631121 75 + TSS region transcription start site region 114197
Tssr114198 12 81631228 to 81631312 84 + TSS region transcription start site region 114198
Ttc9 12 81631249 to 81667557 36308 + protein coding gene tetratricopeptide repeat domain 9
Tssr114199 12 81631380 to 81631394 14 + TSS region transcription start site region 114199
Cdcs8 12 81642309 to 81642455 146 QTL cytokine deficiency colitis susceptibility 8
Cdcs7 12 81642309 to 81642455 146 QTL cytokine deficiency colitis susceptibility 7
D12Mit214 12 81642309 to 81642455 146 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 214
Tssr114200 12 81663339 to 81663348 9 + TSS region transcription start site region 114200
Tssr114201 12 81663358 to 81663378 20 + TSS region transcription start site region 114201
Tssr116933 12 81663993 to 81664006 13 - TSS region transcription start site region 116933
Gm3529 12 81708814 to 81711786 2972 + pseudogene predicted gene 3529
Tssr114202 12 81709103 to 81709138 35 + TSS region transcription start site region 114202
Gm49654 12 81717830 to 81720052 2222 - lincRNA gene predicted gene, 49654
Map3k9 12 81721010 to 81781175 60165 - protein coding gene mitogen-activated protein kinase kinase kinase 9
Tssr3882 12 81764462 to 81764508 46 - TSS region transcription start site region 3882
Tssr116934 12 81765127 to 81765130 3 - TSS region transcription start site region 116934
Cpgi4832 12 81780251 to 81781746 1495 CpG island CpG island 4832
Tssr114203 12 81780284 to 81780303 19 + TSS region transcription start site region 114203
Tssr116935 12 81781043 to 81781066 23 - TSS region transcription start site region 116935
Tssr116936 12 81781121 to 81781176 55 - TSS region transcription start site region 116936
4930423D22Rik 12 81781358 to 81783031 1673 + bidirectional promoter lncRNA gene RIKEN cDNA 4930423D22 gene
Gm46366 12 81781453 to 81791090 9637 - lncRNA gene predicted gene, 46366
Tssr116937 12 81790889 to 81790898 9 - TSS region transcription start site region 116937
Tssr116938 12 81790901 to 81790940 39 - TSS region transcription start site region 116938
Gm30706 12 81792430 to 81807348 14918 - lncRNA gene predicted gene, 30706
Tssr116939 12 81817259 to 81817280 21 - TSS region transcription start site region 116939
Tssr116940 12 81817281 to 81817287 6 - TSS region transcription start site region 116940
Gm47080 12 81827799 to 81853031 25232 + lincRNA gene predicted gene, 47080
Cpgi4833 12 81845056 to 81845241 185 CpG island CpG island 4833
Cpgi4834 12 81859660 to 81861268 1608 CpG island CpG island 4834
Tssr114204 12 81859881 to 81859924 43 + TSS region transcription start site region 114204
Tssr114205 12 81859964 to 81860036 72 + TSS region transcription start site region 114205
Pcnx 12 81860028 to 82000924 140896 + protein coding gene pecanex homolog
Tssr114206 12 81860073 to 81860121 48 + TSS region transcription start site region 114206
Tssr114207 12 81860190 to 81860236 46 + TSS region transcription start site region 114207
Tssr114208 12 81928156 to 81928172 16 + TSS region transcription start site region 114208
Tssr114209 12 81959121 to 81959133 12 + TSS region transcription start site region 114209
Tssr114210 12 81959186 to 81959194 8 + TSS region transcription start site region 114210
Tssr114211 12 81971168 to 81971199 31 + TSS region transcription start site region 114211
Tssr114212 12 81971202 to 81971221 19 + TSS region transcription start site region 114212
Tssr114213 12 81971222 to 81971245 23 + TSS region transcription start site region 114213
Cpgi4835 12 81971381 to 81971583 202 CpG island CpG island 4835
Gm49749 12 82000268 to 82000919 651 + lincRNA gene predicted gene, 49749