Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:80961151-81371234

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28 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Slc10a1 12 80953185 to 80968700 15515 - protein coding gene solute carrier family 10 (sodium/bile acid cotransporter family), member 1
Tssr116910 12 80967632 to 80967641 9 - TSS region transcription start site region 116910
Tssr116911 12 80967981 to 80967993 12 - TSS region transcription start site region 116911
Tssr116912 12 80967995 to 80968032 37 - TSS region transcription start site region 116912
Tssr116913 12 80968036 to 80968053 17 - TSS region transcription start site region 116913
Tssr116914 12 80968075 to 80968086 11 - TSS region transcription start site region 116914
Tssr116915 12 80968787 to 80968799 12 - TSS region transcription start site region 116915
Cpgi4825 12 80998714 to 80999235 521 CpG island CpG island 4825
Cpgi4826 12 81026467 to 81027739 1272 CpG island CpG island 4826
Tssr114190 12 81026800 to 81026818 18 + TSS region transcription start site region 114190
Smoc1 12 81026808 to 81186414 159606 + protein coding gene SPARC related modular calcium binding 1
Tssr114191 12 81036180 to 81036184 4 + TSS region transcription start site region 114191
Tssr114192 12 81054752 to 81054757 5 + TSS region transcription start site region 114192
Gm18031 12 81102827 to 81103506 679 + pseudogene predicted gene, 18031
Tssr114193 12 81152421 to 81152432 11 + TSS region transcription start site region 114193
Tssr114194 12 81152479 to 81152497 18 + TSS region transcription start site region 114194
Mir3067 12 81166151 to 81166234 83 + miRNA gene microRNA 3067
Tssr114195 12 81183879 to 81183889 10 + TSS region transcription start site region 114195
Slc8a3 12 81197915 to 81333180 135265 - protein coding gene solute carrier family 8 (sodium/calcium exchanger), member 3
Gm3693 12 81227580 to 81242492 14912 + antisense lncRNA gene predicted gene 3693
2310068G24Rik 12 81243457 to 81245070 1613 unclassified gene RIKEN cDNA 2310068G24 gene
Tssr116916 12 81287110 to 81287111 1 - TSS region transcription start site region 116916
Cpgi4827 12 81331985 to 81333611 1626 CpG island CpG island 4827
Tssr116917 12 81333129 to 81333220 91 - TSS region transcription start site region 116917
Tssr116918 12 81333523 to 81333552 29 - TSS region transcription start site region 116918
Gm46365 12 81333835 to 81341365 7530 + lncRNA gene predicted gene, 46365
Gm20498 12 81358860 to 81532905 174045 - protein coding gene predicted gene 20498
Cox16 12 81359026 to 81485127 126101 - protein coding gene cytochrome c oxidase assembly protein 16