Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:80948457-81540070

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69 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Srsf5 12 80945504 to 80950507 5003 + protein coding gene serine/arginine-rich splicing factor 5
Tssr114185 12 80948585 to 80948638 53 + TSS region transcription start site region 114185
Tssr114186 12 80948642 to 80948654 12 + TSS region transcription start site region 114186
Tssr114187 12 80948677 to 80948711 34 + TSS region transcription start site region 114187
Tssr114188 12 80948751 to 80948755 4 + TSS region transcription start site region 114188
Tssr114189 12 80948823 to 80948841 18 + TSS region transcription start site region 114189
Slc10a1 12 80953185 to 80968700 15515 - protein coding gene solute carrier family 10 (sodium/bile acid cotransporter family), member 1
Tssr116900 12 80956031 to 80956057 26 - TSS region transcription start site region 116900
Tssr116901 12 80958050 to 80958061 11 - TSS region transcription start site region 116901
Tssr116902 12 80958083 to 80958102 19 - TSS region transcription start site region 116902
Tssr116903 12 80958129 to 80958138 9 - TSS region transcription start site region 116903
Tssr116904 12 80958160 to 80958202 42 - TSS region transcription start site region 116904
Tssr116905 12 80960504 to 80960505 1 - TSS region transcription start site region 116905
Tssr116906 12 80960525 to 80960536 11 - TSS region transcription start site region 116906
Tssr116907 12 80960544 to 80960559 15 - TSS region transcription start site region 116907
Tssr116908 12 80960599 to 80960629 30 - TSS region transcription start site region 116908
Tssr116909 12 80960654 to 80960664 10 - TSS region transcription start site region 116909
Tssr116910 12 80967632 to 80967641 9 - TSS region transcription start site region 116910
Tssr116911 12 80967981 to 80967993 12 - TSS region transcription start site region 116911
Tssr116912 12 80967995 to 80968032 37 - TSS region transcription start site region 116912
Tssr116913 12 80968036 to 80968053 17 - TSS region transcription start site region 116913
Tssr116914 12 80968075 to 80968086 11 - TSS region transcription start site region 116914
Tssr116915 12 80968787 to 80968799 12 - TSS region transcription start site region 116915
Cpgi4825 12 80998714 to 80999235 521 CpG island CpG island 4825
Cpgi4826 12 81026467 to 81027739 1272 CpG island CpG island 4826
Tssr114190 12 81026800 to 81026818 18 + TSS region transcription start site region 114190
Smoc1 12 81026808 to 81186414 159606 + protein coding gene SPARC related modular calcium binding 1
Tssr114191 12 81036180 to 81036184 4 + TSS region transcription start site region 114191
Tssr114192 12 81054752 to 81054757 5 + TSS region transcription start site region 114192
Gm18031 12 81102827 to 81103506 679 + pseudogene predicted gene, 18031
Tssr114193 12 81152421 to 81152432 11 + TSS region transcription start site region 114193
Tssr114194 12 81152479 to 81152497 18 + TSS region transcription start site region 114194
Mir3067 12 81166151 to 81166234 83 + miRNA gene microRNA 3067
Tssr114195 12 81183879 to 81183889 10 + TSS region transcription start site region 114195
Slc8a3 12 81197915 to 81333180 135265 - protein coding gene solute carrier family 8 (sodium/calcium exchanger), member 3
Gm3693 12 81227580 to 81242492 14912 + antisense lncRNA gene predicted gene 3693
2310068G24Rik 12 81243457 to 81245070 1613 unclassified gene RIKEN cDNA 2310068G24 gene
Tssr116916 12 81287110 to 81287111 1 - TSS region transcription start site region 116916
Cpgi4827 12 81331985 to 81333611 1626 CpG island CpG island 4827
Tssr116917 12 81333129 to 81333220 91 - TSS region transcription start site region 116917
Tssr116918 12 81333523 to 81333552 29 - TSS region transcription start site region 116918
Gm46365 12 81333835 to 81341365 7530 + lncRNA gene predicted gene, 46365
Gm20498 12 81358860 to 81532905 174045 - protein coding gene predicted gene 20498
Cox16 12 81359026 to 81485127 126101 - protein coding gene cytochrome c oxidase assembly protein 16
Gm3695 12 81372213 to 81373221 1008 - pseudogene predicted gene 3695
Tssr116919 12 81373292 to 81373293 1 - TSS region transcription start site region 116919
Gm4787 12 81376991 to 81379464 2473 - protein coding gene predicted gene 4787
Hspe1-ps2 12 81399812 to 81400123 311 + pseudogene heat shock protein 1 (chaperonin 10), pseudogene 2
Adam4 12 81419443 to 81421946 2503 - protein coding gene a disintegrin and metallopeptidase domain 4
Tssr116920 12 81421910 to 81421921 11 - TSS region transcription start site region 116920
Tssr3881 12 81421931 to 81421936 5 - TSS region transcription start site region 3881
BB042571 12 81446278 to 81448878 2600 unclassified gene expressed sequence BB042571
Tssr116921 12 81456926 to 81456927 1 - TSS region transcription start site region 116921
Tssr116922 12 81472264 to 81472276 12 - TSS region transcription start site region 116922
Tssr116923 12 81475348 to 81475355 7 - TSS region transcription start site region 116923
Cpgi4828 12 81484659 to 81485235 576 CpG island CpG island 4828
Tssr116924 12 81485027 to 81485065 38 - TSS region transcription start site region 116924
Tssr116925 12 81485075 to 81485140 65 - TSS region transcription start site region 116925
Gm28370 12 81492199 to 81497015 4816 + antisense lncRNA gene predicted gene 28370
Synj2bp 12 81497941 to 81532911 34970 - protein coding gene synaptojanin 2 binding protein
Gm24853 12 81501240 to 81501360 120 + snoRNA gene predicted gene, 24853
Tssr116926 12 81511058 to 81511083 25 - TSS region transcription start site region 116926
C630016I17Rik 12 81518109 to 81521662 3553 unclassified gene RIKEN cDNA C630016I17 gene
Gm17191 12 81532035 to 81533358 1323 - unclassified non-coding RNA gene predicted gene 17191
Cpgi4829 12 81532331 to 81533024 693 CpG island CpG island 4829
Tssr116927 12 81532811 to 81532818 7 - TSS region transcription start site region 116927
Tssr116928 12 81532840 to 81532925 85 - TSS region transcription start site region 116928
Tssr114196 12 81532950 to 81532990 40 + TSS region transcription start site region 114196
6530401F13Rik 12 81532968 to 81557458 24490 + unclassified non-coding RNA gene RIKEN cDNA 6530401F13 gene