Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:80859934-80960109

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41 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lmblgq5 12 17546446 to 80910109 63363663 QTL limb length QTL 5
Susd6 12 80790532 to 80880833 90301 + protein coding gene sushi domain containing 6
5830400J07Rik 12 80864827 to 80866283 1456 unclassified gene RIKEN cDNA 5830400J07 gene
Tssr114173 12 80864931 to 80864940 9 + TSS region transcription start site region 114173
Tssr114174 12 80877377 to 80877399 22 + TSS region transcription start site region 114174
Tssr114175 12 80877469 to 80877490 21 + TSS region transcription start site region 114175
Tssr114176 12 80878316 to 80878330 14 + TSS region transcription start site region 114176
Tssr114177 12 80878477 to 80878488 11 + TSS region transcription start site region 114177
Gm26545 12 80885549 to 80887674 2125 - lincRNA gene predicted gene, 26545
Tssr114178 12 80885840 to 80885853 13 + TSS region transcription start site region 114178
D12Mit5 12 80909934 to 80910109 175 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 5
Par3 12 80909934 to 80910109 175 QTL pulmonary adenoma resistance 3
Gm23298 12 80911477 to 80911583 106 + snRNA gene predicted gene, 23298
1700052I22Rik 12 80923432 to 80924447 1015 - lincRNA gene RIKEN cDNA 1700052I22 gene
Tssr116897 12 80924410 to 80924425 15 - TSS region transcription start site region 116897
Tssr116898 12 80931445 to 80931451 6 - TSS region transcription start site region 116898
Gm20337 12 80942673 to 80945396 2723 - bidirectional promoter lncRNA gene predicted gene, 20337
Cpgi4824 12 80945286 to 80946548 1262 CpG island CpG island 4824
Tssr116899 12 80945338 to 80945354 16 - TSS region transcription start site region 116899
Tssr114179 12 80945500 to 80945505 5 + TSS region transcription start site region 114179
Srsf5 12 80945504 to 80950507 5003 + protein coding gene serine/arginine-rich splicing factor 5
Tssr114180 12 80945523 to 80945541 18 + TSS region transcription start site region 114180
Tssr114181 12 80946194 to 80946215 21 + TSS region transcription start site region 114181
Tssr114182 12 80946216 to 80946226 10 + TSS region transcription start site region 114182
Tssr114183 12 80946289 to 80946308 19 + TSS region transcription start site region 114183
Tssr114184 12 80947474 to 80947519 45 + TSS region transcription start site region 114184
Tssr114185 12 80948585 to 80948638 53 + TSS region transcription start site region 114185
Tssr114186 12 80948642 to 80948654 12 + TSS region transcription start site region 114186
Tssr114187 12 80948677 to 80948711 34 + TSS region transcription start site region 114187
Tssr114188 12 80948751 to 80948755 4 + TSS region transcription start site region 114188
Tssr114189 12 80948823 to 80948841 18 + TSS region transcription start site region 114189
Slc10a1 12 80953185 to 80968700 15515 - protein coding gene solute carrier family 10 (sodium/bile acid cotransporter family), member 1
Tssr116900 12 80956031 to 80956057 26 - TSS region transcription start site region 116900
Tssr116901 12 80958050 to 80958061 11 - TSS region transcription start site region 116901
Tssr116902 12 80958083 to 80958102 19 - TSS region transcription start site region 116902
Tssr116903 12 80958129 to 80958138 9 - TSS region transcription start site region 116903
Tssr116904 12 80958160 to 80958202 42 - TSS region transcription start site region 116904
Tailaq1 12 113419913 to 80909934 -32509979 QTL tail length adjusted QTL 1
Lvrq10 12 113419913 to 80909934 -32509979 QTL liver weight QTL 10
W6q10 12 113419913 to 80909934 -32509979 QTL weight 6 weeks QTL 10
Egq10 12 113419913 to 80909934 -32509979 QTL early growth QTL 10