Gene symbol | Chromo- some |
Coordinates (bp, mm10) | Size (bp) | Strand | Feature Type | Gene name |
---|---|---|---|---|---|---|
Lmblgq5 | 12 | 63363663 | QTL | limb length QTL 5 | ||
Slc39a9 | 12 | 39179 | + | protein coding gene | solute carrier family 39 (zinc transporter), member 9 | |
Gm47874 | 12 | 574 | - | pseudogene | predicted gene, 47874 | |
Plekhd1os | 12 | 6096 | - | antisense lncRNA gene | pleckstrin homology domain containing, family D (with coiled-coil domains) member 1, opposite strand | |
Cpgi4818 | 12 | 1170 | CpG island | CpG island 4818 | ||
Plekhd1 | 12 | 31623 | + | protein coding gene | pleckstrin homology domain containing, family D (with coiled-coil domains) member 1 | |
Tssr114151 | 12 | 74 | + | TSS region | transcription start site region 114151 | |
Cpgi4819 | 12 | 279 | CpG island | CpG island 4819 | ||
Tssr114152 | 12 | 23 | + | TSS region | transcription start site region 114152 | |
Tssr114153 | 12 | 30 | + | TSS region | transcription start site region 114153 | |
Ccdc177 | 12 | 5268 | - | protein coding gene | coiled-coil domain containing 177 | |
Cpgi4820 | 12 | 2919 | CpG island | CpG island 4820 | ||
Gm26796 | 12 | 4387 | + | antisense lncRNA gene | predicted gene, 26796 | |
Cpgi4821 | 12 | 420 | CpG island | CpG island 4821 | ||
Tssr116892 | 12 | 14 | - | TSS region | transcription start site region 116892 | |
Tssr116893 | 12 | 48 | - | TSS region | transcription start site region 116893 | |
Cpgi4822 | 12 | 174 | CpG island | CpG island 4822 | ||
Tssr116894 | 12 | 10 | - | TSS region | transcription start site region 116894 | |
Gm47941 | 12 | 2399 | - | bidirectional promoter lncRNA gene | predicted gene, 47941 | |
Cpgi4823 | 12 | 1167 | CpG island | CpG island 4823 | ||
Susd6 | 12 | 90301 | + | protein coding gene | sushi domain containing 6 | |
Tssr114154 | 12 | 27 | + | TSS region | transcription start site region 114154 | |
Tssr114155 | 12 | 11 | + | TSS region | transcription start site region 114155 | |
Tssr116895 | 12 | 17 | - | TSS region | transcription start site region 116895 | |
Tssr114156 | 12 | 12 | + | TSS region | transcription start site region 114156 | |
Tssr114157 | 12 | 7 | + | TSS region | transcription start site region 114157 | |
D12Mit288 | 12 | 121 | DNA segment | DNA Segment, Chr 12, Massachusetts Institute of Technology 288 | ||
Tssr116896 | 12 | 44 | - | TSS region | transcription start site region 116896 | |
Tssr114158 | 12 | 15 | + | TSS region | transcription start site region 114158 | |
Tssr114159 | 12 | 16 | + | TSS region | transcription start site region 114159 | |
Tssr114160 | 12 | 5 | + | TSS region | transcription start site region 114160 | |
Tssr3880 | 12 | 5 | + | TSS region | transcription start site region 3880 | |
Tssr114161 | 12 | 7 | + | TSS region | transcription start site region 114161 | |
Tssr114162 | 12 | 9 | + | TSS region | transcription start site region 114162 | |
Tssr114163 | 12 | 16 | + | TSS region | transcription start site region 114163 | |
Tssr114164 | 12 | 46 | + | TSS region | transcription start site region 114164 | |
Tssr114165 | 12 | 12 | + | TSS region | transcription start site region 114165 | |
Tssr114166 | 12 | 11 | + | TSS region | transcription start site region 114166 | |
Tssr114167 | 12 | 8 | + | TSS region | transcription start site region 114167 | |
Tssr114168 | 12 | 13 | + | TSS region | transcription start site region 114168 | |
Tssr114169 | 12 | 4 | + | TSS region | transcription start site region 114169 | |
Tssr114170 | 12 | 13 | + | TSS region | transcription start site region 114170 | |
Tssr114171 | 12 | 13 | + | TSS region | transcription start site region 114171 | |
Tssr114172 | 12 | 1 | + | TSS region | transcription start site region 114172 | |
5830400J07Rik | 12 | 1456 | unclassified gene | RIKEN cDNA 5830400J07 gene | ||
Tssr114173 | 12 | 9 | + | TSS region | transcription start site region 114173 | |
Tssr114174 | 12 | 22 | + | TSS region | transcription start site region 114174 | |
Tssr114175 | 12 | 21 | + | TSS region | transcription start site region 114175 | |
Tssr114176 | 12 | 14 | + | TSS region | transcription start site region 114176 | |
Tssr114177 | 12 | 11 | + | TSS region | transcription start site region 114177 | |
Gm26545 | 12 | 2125 | - | lincRNA gene | predicted gene, 26545 | |
Tssr114178 | 12 | 13 | + | TSS region | transcription start site region 114178 | |
D12Mit5 | 12 | 175 | DNA segment | DNA segment, Chr 12, Massachusetts Institute of Technology 5 | ||
Par3 | 12 | 175 | QTL | pulmonary adenoma resistance 3 | ||
Gm23298 | 12 | 106 | + | snRNA gene | predicted gene, 23298 | |
1700052I22Rik | 12 | 1015 | - | lincRNA gene | RIKEN cDNA 1700052I22 gene | |
Tssr116897 | 12 | 15 | - | TSS region | transcription start site region 116897 | |
Tssr116898 | 12 | 6 | - | TSS region | transcription start site region 116898 | |
Gm20337 | 12 | 2723 | - | bidirectional promoter lncRNA gene | predicted gene, 20337 | |
Cpgi4824 | 12 | 1262 | CpG island | CpG island 4824 | ||
Tssr116899 | 12 | 16 | - | TSS region | transcription start site region 116899 | |
Tssr114179 | 12 | 5 | + | TSS region | transcription start site region 114179 | |
Srsf5 | 12 | 5003 | + | protein coding gene | serine/arginine-rich splicing factor 5 | |
Tssr114180 | 12 | 18 | + | TSS region | transcription start site region 114180 | |
Tssr114181 | 12 | 21 | + | TSS region | transcription start site region 114181 | |
Tssr114182 | 12 | 10 | + | TSS region | transcription start site region 114182 | |
Tssr114183 | 12 | 19 | + | TSS region | transcription start site region 114183 | |
Tssr114184 | 12 | 45 | + | TSS region | transcription start site region 114184 | |
Tssr114185 | 12 | 53 | + | TSS region | transcription start site region 114185 | |
Tssr114186 | 12 | 12 | + | TSS region | transcription start site region 114186 | |
Tssr114187 | 12 | 34 | + | TSS region | transcription start site region 114187 | |
Tssr114188 | 12 | 4 | + | TSS region | transcription start site region 114188 | |
Tssr114189 | 12 | 18 | + | TSS region | transcription start site region 114189 | |
Slc10a1 | 12 | 15515 | - | protein coding gene | solute carrier family 10 (sodium/bile acid cotransporter family), member 1 | |
Tssr116900 | 12 | 26 | - | TSS region | transcription start site region 116900 | |
Tssr116901 | 12 | 11 | - | TSS region | transcription start site region 116901 | |
Tssr116902 | 12 | 19 | - | TSS region | transcription start site region 116902 | |
Tssr116903 | 12 | 9 | - | TSS region | transcription start site region 116903 | |
Tssr116904 | 12 | 42 | - | TSS region | transcription start site region 116904 | |
Tssr116905 | 12 | 1 | - | TSS region | transcription start site region 116905 | |
Tssr116906 | 12 | 11 | - | TSS region | transcription start site region 116906 | |
Tssr116907 | 12 | 15 | - | TSS region | transcription start site region 116907 | |
Tssr116908 | 12 | 30 | - | TSS region | transcription start site region 116908 | |
Tssr116909 | 12 | 10 | - | TSS region | transcription start site region 116909 | |
Tssr116910 | 12 | 9 | - | TSS region | transcription start site region 116910 | |
Tssr116911 | 12 | 12 | - | TSS region | transcription start site region 116911 | |
Tssr116912 | 12 | 37 | - | TSS region | transcription start site region 116912 | |
Tssr116913 | 12 | 17 | - | TSS region | transcription start site region 116913 | |
Tssr116914 | 12 | 11 | - | TSS region | transcription start site region 116914 | |
Tssr116915 | 12 | 12 | - | TSS region | transcription start site region 116915 | |
Cpgi4825 | 12 | 521 | CpG island | CpG island 4825 | ||
Cpgi4826 | 12 | 1272 | CpG island | CpG island 4826 | ||
Tssr114190 | 12 | 18 | + | TSS region | transcription start site region 114190 | |
Smoc1 | 12 | 159606 | + | protein coding gene | SPARC related modular calcium binding 1 | |
Tssr114191 | 12 | 4 | + | TSS region | transcription start site region 114191 | |
Tssr114192 | 12 | 5 | + | TSS region | transcription start site region 114192 | |
Gm18031 | 12 | 679 | + | pseudogene | predicted gene, 18031 | |
Tssr114193 | 12 | 11 | + | TSS region | transcription start site region 114193 | |
Tssr114194 | 12 | 18 | + | TSS region | transcription start site region 114194 | |
Mir3067 | 12 | 83 | + | miRNA gene | microRNA 3067 | |
Tssr114195 | 12 | 10 | + | TSS region | transcription start site region 114195 | |
Slc8a3 | 12 | 135265 | - | protein coding gene | solute carrier family 8 (sodium/calcium exchanger), member 3 | |
Gm3693 | 12 | 14912 | + | antisense lncRNA gene | predicted gene 3693 | |
2310068G24Rik | 12 | 1613 | unclassified gene | RIKEN cDNA 2310068G24 gene | ||
Tssr116916 | 12 | 1 | - | TSS region | transcription start site region 116916 | |
Cpgi4827 | 12 | 1626 | CpG island | CpG island 4827 | ||
Tssr116917 | 12 | 91 | - | TSS region | transcription start site region 116917 | |
Tssr116918 | 12 | 29 | - | TSS region | transcription start site region 116918 | |
Gm46365 | 12 | 7530 | + | lncRNA gene | predicted gene, 46365 | |
Gm20498 | 12 | 174045 | - | protein coding gene | predicted gene 20498 | |
Cox16 | 12 | 126101 | - | protein coding gene | cytochrome c oxidase assembly protein 16 | |
Gm3695 | 12 | 1008 | - | pseudogene | predicted gene 3695 | |
Tssr116919 | 12 | 1 | - | TSS region | transcription start site region 116919 | |
Gm4787 | 12 | 2473 | - | protein coding gene | predicted gene 4787 | |
Hspe1-ps2 | 12 | 311 | + | pseudogene | heat shock protein 1 (chaperonin 10), pseudogene 2 | |
Adam4 | 12 | 2503 | - | protein coding gene | a disintegrin and metallopeptidase domain 4 | |
Tssr116920 | 12 | 11 | - | TSS region | transcription start site region 116920 | |
Tssr3881 | 12 | 5 | - | TSS region | transcription start site region 3881 | |
BB042571 | 12 | 2600 | unclassified gene | expressed sequence BB042571 | ||
Tssr116921 | 12 | 1 | - | TSS region | transcription start site region 116921 | |
Tssr116922 | 12 | 12 | - | TSS region | transcription start site region 116922 | |
Tssr116923 | 12 | 7 | - | TSS region | transcription start site region 116923 | |
Cpgi4828 | 12 | 576 | CpG island | CpG island 4828 | ||
Tssr116924 | 12 | 38 | - | TSS region | transcription start site region 116924 | |
Tssr116925 | 12 | 65 | - | TSS region | transcription start site region 116925 | |
Gm28370 | 12 | 4816 | + | antisense lncRNA gene | predicted gene 28370 | |
Synj2bp | 12 | 34970 | - | protein coding gene | synaptojanin 2 binding protein | |
Gm24853 | 12 | 120 | + | snoRNA gene | predicted gene, 24853 | |
Tssr116926 | 12 | 25 | - | TSS region | transcription start site region 116926 | |
C630016I17Rik | 12 | 3553 | unclassified gene | RIKEN cDNA C630016I17 gene | ||
Gm17191 | 12 | 1323 | - | unclassified non-coding RNA gene | predicted gene 17191 | |
Cpgi4829 | 12 | 693 | CpG island | CpG island 4829 | ||
Tssr116927 | 12 | 7 | - | TSS region | transcription start site region 116927 | |
Tssr116928 | 12 | 85 | - | TSS region | transcription start site region 116928 | |
Tssr114196 | 12 | 40 | + | TSS region | transcription start site region 114196 | |
6530401F13Rik | 12 | 24490 | + | unclassified non-coding RNA gene | RIKEN cDNA 6530401F13 gene | |
Adam21 | 12 | 9890 | - | protein coding gene | a disintegrin and metallopeptidase domain 21 | |
Tssr116929 | 12 | 12 | - | TSS region | transcription start site region 116929 | |
Tssr116930 | 12 | 31 | - | TSS region | transcription start site region 116930 | |
Tssr116931 | 12 | 9 | - | TSS region | transcription start site region 116931 | |
Med6 | 12 | 21451 | - | protein coding gene | mediator complex subunit 6 | |
7030407O06Rik | 12 | 2716 | unclassified gene | RIKEN cDNA 7030407O06 gene | ||
Gm16572 | 12 | 1841 | + | antisense lncRNA gene | predicted gene 16572 | |
Gm16570 | 12 | 435 | - | pseudogene | predicted gene 16570 | |
Cpgi4830 | 12 | 504 | CpG island | CpG island 4830 | ||
Tssr116932 | 12 | 56 | - | TSS region | transcription start site region 116932 | |
D12Mit255 | 12 | 120 | DNA segment | DNA Segment, Chr 12, Massachusetts Institute of Technology 255 | ||
Cpgi4831 | 12 | 1516 | CpG island | CpG island 4831 | ||
Tssr114197 | 12 | 75 | + | TSS region | transcription start site region 114197 | |
Tssr114198 | 12 | 84 | + | TSS region | transcription start site region 114198 | |
Ttc9 | 12 | 36308 | + | protein coding gene | tetratricopeptide repeat domain 9 | |
Tssr114199 | 12 | 14 | + | TSS region | transcription start site region 114199 | |
D12Mit214 | 12 | 146 | DNA segment | DNA segment, Chr 12, Massachusetts Institute of Technology 214 | ||
Cdcs8 | 12 | 146 | QTL | cytokine deficiency colitis susceptibility 8 | ||
Cdcs7 | 12 | 146 | QTL | cytokine deficiency colitis susceptibility 7 | ||
Tssr114200 | 12 | 9 | + | TSS region | transcription start site region 114200 | |
Tssr114201 | 12 | 20 | + | TSS region | transcription start site region 114201 | |
Tssr116933 | 12 | 13 | - | TSS region | transcription start site region 116933 | |
Gm3529 | 12 | 2972 | + | pseudogene | predicted gene 3529 | |
Tssr114202 | 12 | 35 | + | TSS region | transcription start site region 114202 | |
Gm49654 | 12 | 2222 | - | lincRNA gene | predicted gene, 49654 | |
Map3k9 | 12 | 60165 | - | protein coding gene | mitogen-activated protein kinase kinase kinase 9 | |
Tssr3882 | 12 | 46 | - | TSS region | transcription start site region 3882 | |
Tssr116934 | 12 | 3 | - | TSS region | transcription start site region 116934 | |
Cpgi4832 | 12 | 1495 | CpG island | CpG island 4832 | ||
Tssr114203 | 12 | 19 | + | TSS region | transcription start site region 114203 | |
Tssr116935 | 12 | 23 | - | TSS region | transcription start site region 116935 | |
Tssr116936 | 12 | 55 | - | TSS region | transcription start site region 116936 | |
4930423D22Rik | 12 | 1673 | + | bidirectional promoter lncRNA gene | RIKEN cDNA 4930423D22 gene | |
Gm46366 | 12 | 9637 | - | lncRNA gene | predicted gene, 46366 | |
Tssr116937 | 12 | 9 | - | TSS region | transcription start site region 116937 | |
Tssr116938 | 12 | 39 | - | TSS region | transcription start site region 116938 | |
Gm30706 | 12 | 14918 | - | lncRNA gene | predicted gene, 30706 | |
Tssr116939 | 12 | 21 | - | TSS region | transcription start site region 116939 | |
Tssr116940 | 12 | 6 | - | TSS region | transcription start site region 116940 | |
Gm47080 | 12 | 25232 | + | lincRNA gene | predicted gene, 47080 | |
Cpgi4833 | 12 | 185 | CpG island | CpG island 4833 | ||
Cpgi4834 | 12 | 1608 | CpG island | CpG island 4834 | ||
Tssr114204 | 12 | 43 | + | TSS region | transcription start site region 114204 | |
Tssr114205 | 12 | 72 | + | TSS region | transcription start site region 114205 | |
Pcnx | 12 | 140896 | + | protein coding gene | pecanex homolog | |
Tssr114206 | 12 | 48 | + | TSS region | transcription start site region 114206 | |
Tssr114207 | 12 | 46 | + | TSS region | transcription start site region 114207 | |
Tssr114208 | 12 | 16 | + | TSS region | transcription start site region 114208 | |
Tssr114209 | 12 | 12 | + | TSS region | transcription start site region 114209 | |
Tssr114210 | 12 | 8 | + | TSS region | transcription start site region 114210 | |
Tssr114211 | 12 | 31 | + | TSS region | transcription start site region 114211 | |
Tssr114212 | 12 | 19 | + | TSS region | transcription start site region 114212 | |
Tssr114213 | 12 | 23 | + | TSS region | transcription start site region 114213 | |
Cpgi4835 | 12 | 202 | CpG island | CpG island 4835 | ||
Gm49749 | 12 | 651 | + | lincRNA gene | predicted gene, 49749 | |
Gm30799 | 12 | 53542 | + | lncRNA gene | predicted gene, 30799 | |
Cpgi4836 | 12 | 291 | CpG island | CpG island 4836 | ||
Tssr3883 | 12 | 14 | + | TSS region | transcription start site region 3883 | |
Tssr116941 | 12 | 4 | - | TSS region | transcription start site region 116941 | |
n-R5s62 | 12 | 95 | + | rRNA gene | nuclear encoded rRNA 5S 62 | |
Gm48242 | 12 | 255 | - | lincRNA gene | predicted gene, 48242 | |
Cpgi4837 | 12 | 1783 | CpG island | CpG island 4837 | ||
Sipa1l1 | 12 | 282408 | + | protein coding gene | signal-induced proliferation-associated 1 like 1 | |
Tssr114214 | 12 | 24 | + | TSS region | transcription start site region 114214 |