Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:80595588-81005593

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109 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lmblgq5 12 17546446 to 80910109 63363663 QTL limb length QTL 5
Galnt16 12 80518277 to 80603896 85619 + protein coding gene polypeptide N-acetylgalactosaminyltransferase 16
4933406B15Rik 12 80583011 to 80597140 14129 - antisense lncRNA gene RIKEN cDNA 4933406B15 gene
Tssr116889 12 80597124 to 80597139 15 - TSS region transcription start site region 116889
Gm46364 12 80613296 to 80613614 318 + pseudogene predicted gene, 46364
Gm23817 12 80622830 to 80622933 103 - snRNA gene predicted gene, 23817
Gm47852 12 80629294 to 80629558 264 - pseudogene predicted gene, 47852
Erh 12 80634023 to 80643871 9848 - protein coding gene ERH mRNA splicing and mitosis factor
Gm47879 12 80635992 to 80637371 1379 + antisense lncRNA gene predicted gene, 47879
Cpgi4817 12 80643262 to 80644813 1551 CpG island CpG island 4817
Tssr116890 12 80643799 to 80643857 58 - TSS region transcription start site region 116890
Tssr116891 12 80643858 to 80643869 11 - TSS region transcription start site region 116891
Slc39a9 12 80644163 to 80683342 39179 + protein coding gene solute carrier family 39 (zinc transporter), member 9
Tssr114148 12 80644212 to 80644265 53 + TSS region transcription start site region 114148
Tssr114149 12 80644470 to 80644496 26 + TSS region transcription start site region 114149
Tssr114150 12 80644502 to 80644525 23 + TSS region transcription start site region 114150
Gm47874 12 80648637 to 80649211 574 - pseudogene predicted gene, 47874
Plekhd1os 12 80686370 to 80692466 6096 - antisense lncRNA gene pleckstrin homology domain containing, family D (with coiled-coil domains) member 1, opposite strand
Cpgi4818 12 80692127 to 80693297 1170 CpG island CpG island 4818
Plekhd1 12 80692591 to 80724214 31623 + protein coding gene pleckstrin homology domain containing, family D (with coiled-coil domains) member 1
Tssr114151 12 80692643 to 80692717 74 + TSS region transcription start site region 114151
Cpgi4819 12 80721321 to 80721600 279 CpG island CpG island 4819
Tssr114152 12 80721696 to 80721719 23 + TSS region transcription start site region 114152
Tssr114153 12 80721727 to 80721757 30 + TSS region transcription start site region 114153
Ccdc177 12 80755447 to 80760715 5268 - protein coding gene coiled-coil domain containing 177
Cpgi4820 12 80756999 to 80759918 2919 CpG island CpG island 4820
Gm26796 12 80758406 to 80762793 4387 + antisense lncRNA gene predicted gene, 26796
Cpgi4821 12 80760192 to 80760612 420 CpG island CpG island 4821
Tssr116892 12 80760532 to 80760546 14 - TSS region transcription start site region 116892
Tssr116893 12 80760682 to 80760730 48 - TSS region transcription start site region 116893
Cpgi4822 12 80778245 to 80778419 174 CpG island CpG island 4822
Tssr116894 12 80780496 to 80780506 10 - TSS region transcription start site region 116894
Gm47941 12 80787944 to 80790343 2399 - bidirectional promoter lncRNA gene predicted gene, 47941
Cpgi4823 12 80790195 to 80791362 1167 CpG island CpG island 4823
Susd6 12 80790532 to 80880833 90301 + protein coding gene sushi domain containing 6
Tssr114154 12 80790547 to 80790574 27 + TSS region transcription start site region 114154
Tssr114155 12 80790584 to 80790595 11 + TSS region transcription start site region 114155
Tssr116895 12 80791179 to 80791196 17 - TSS region transcription start site region 116895
Tssr114156 12 80791431 to 80791443 12 + TSS region transcription start site region 114156
Tssr114157 12 80791459 to 80791466 7 + TSS region transcription start site region 114157
D12Mit288 12 80791635 to 80791756 121 DNA segment DNA Segment, Chr 12, Massachusetts Institute of Technology 288
Tssr116896 12 80792992 to 80793036 44 - TSS region transcription start site region 116896
Tssr114158 12 80793095 to 80793110 15 + TSS region transcription start site region 114158
Tssr114159 12 80793339 to 80793355 16 + TSS region transcription start site region 114159
Tssr114160 12 80800588 to 80800593 5 + TSS region transcription start site region 114160
Tssr3880 12 80816649 to 80816654 5 + TSS region transcription start site region 3880
Tssr114161 12 80816677 to 80816684 7 + TSS region transcription start site region 114161
Tssr114162 12 80816687 to 80816696 9 + TSS region transcription start site region 114162
Tssr114163 12 80816727 to 80816743 16 + TSS region transcription start site region 114163
Tssr114164 12 80819405 to 80819451 46 + TSS region transcription start site region 114164
Tssr114165 12 80827607 to 80827619 12 + TSS region transcription start site region 114165
Tssr114166 12 80827713 to 80827724 11 + TSS region transcription start site region 114166
Tssr114167 12 80833869 to 80833877 8 + TSS region transcription start site region 114167
Tssr114168 12 80847145 to 80847158 13 + TSS region transcription start site region 114168
Tssr114169 12 80854027 to 80854031 4 + TSS region transcription start site region 114169
Tssr114170 12 80854048 to 80854061 13 + TSS region transcription start site region 114170
Tssr114171 12 80854097 to 80854110 13 + TSS region transcription start site region 114171
Tssr114172 12 80859110 to 80859111 1 + TSS region transcription start site region 114172
5830400J07Rik 12 80864827 to 80866283 1456 unclassified gene RIKEN cDNA 5830400J07 gene
Tssr114173 12 80864931 to 80864940 9 + TSS region transcription start site region 114173
Tssr114174 12 80877377 to 80877399 22 + TSS region transcription start site region 114174
Tssr114175 12 80877469 to 80877490 21 + TSS region transcription start site region 114175
Tssr114176 12 80878316 to 80878330 14 + TSS region transcription start site region 114176
Tssr114177 12 80878477 to 80878488 11 + TSS region transcription start site region 114177
Gm26545 12 80885549 to 80887674 2125 - lincRNA gene predicted gene, 26545
Tssr114178 12 80885840 to 80885853 13 + TSS region transcription start site region 114178
D12Mit5 12 80909934 to 80910109 175 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 5
Par3 12 80909934 to 80910109 175 QTL pulmonary adenoma resistance 3
Gm23298 12 80911477 to 80911583 106 + snRNA gene predicted gene, 23298
1700052I22Rik 12 80923432 to 80924447 1015 - lincRNA gene RIKEN cDNA 1700052I22 gene
Tssr116897 12 80924410 to 80924425 15 - TSS region transcription start site region 116897
Tssr116898 12 80931445 to 80931451 6 - TSS region transcription start site region 116898
Gm20337 12 80942673 to 80945396 2723 - bidirectional promoter lncRNA gene predicted gene, 20337
Cpgi4824 12 80945286 to 80946548 1262 CpG island CpG island 4824
Tssr116899 12 80945338 to 80945354 16 - TSS region transcription start site region 116899
Tssr114179 12 80945500 to 80945505 5 + TSS region transcription start site region 114179
Srsf5 12 80945504 to 80950507 5003 + protein coding gene serine/arginine-rich splicing factor 5
Tssr114180 12 80945523 to 80945541 18 + TSS region transcription start site region 114180
Tssr114181 12 80946194 to 80946215 21 + TSS region transcription start site region 114181
Tssr114182 12 80946216 to 80946226 10 + TSS region transcription start site region 114182
Tssr114183 12 80946289 to 80946308 19 + TSS region transcription start site region 114183
Tssr114184 12 80947474 to 80947519 45 + TSS region transcription start site region 114184
Tssr114185 12 80948585 to 80948638 53 + TSS region transcription start site region 114185
Tssr114186 12 80948642 to 80948654 12 + TSS region transcription start site region 114186
Tssr114187 12 80948677 to 80948711 34 + TSS region transcription start site region 114187
Tssr114188 12 80948751 to 80948755 4 + TSS region transcription start site region 114188
Tssr114189 12 80948823 to 80948841 18 + TSS region transcription start site region 114189
Slc10a1 12 80953185 to 80968700 15515 - protein coding gene solute carrier family 10 (sodium/bile acid cotransporter family), member 1
Tssr116900 12 80956031 to 80956057 26 - TSS region transcription start site region 116900
Tssr116901 12 80958050 to 80958061 11 - TSS region transcription start site region 116901
Tssr116902 12 80958083 to 80958102 19 - TSS region transcription start site region 116902
Tssr116903 12 80958129 to 80958138 9 - TSS region transcription start site region 116903
Tssr116904 12 80958160 to 80958202 42 - TSS region transcription start site region 116904
Tssr116905 12 80960504 to 80960505 1 - TSS region transcription start site region 116905
Tssr116906 12 80960525 to 80960536 11 - TSS region transcription start site region 116906
Tssr116907 12 80960544 to 80960559 15 - TSS region transcription start site region 116907
Tssr116908 12 80960599 to 80960629 30 - TSS region transcription start site region 116908
Tssr116909 12 80960654 to 80960664 10 - TSS region transcription start site region 116909
Tssr116910 12 80967632 to 80967641 9 - TSS region transcription start site region 116910
Tssr116911 12 80967981 to 80967993 12 - TSS region transcription start site region 116911
Tssr116912 12 80967995 to 80968032 37 - TSS region transcription start site region 116912
Tssr116913 12 80968036 to 80968053 17 - TSS region transcription start site region 116913
Tssr116914 12 80968075 to 80968086 11 - TSS region transcription start site region 116914
Tssr116915 12 80968787 to 80968799 12 - TSS region transcription start site region 116915
Cpgi4825 12 80998714 to 80999235 521 CpG island CpG island 4825
Egq10 12 113419913 to 80909934 -32509979 QTL early growth QTL 10
Tailaq1 12 113419913 to 80909934 -32509979 QTL tail length adjusted QTL 1
Lvrq10 12 113419913 to 80909934 -32509979 QTL liver weight QTL 10
W6q10 12 113419913 to 80909934 -32509979 QTL weight 6 weeks QTL 10