Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:80438557-80598575

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22 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr116887 12 80441487 to 80441518 31 - TSS region transcription start site region 116887
Tssr116888 12 80441545 to 80441546 1 - TSS region transcription start site region 116888
Gm46363 12 80450478 to 80459126 8648 - lncRNA gene predicted gene, 46363
Gm30076 12 80459164 to 80463219 4055 - lncRNA gene predicted gene, 30076
Cpgi4815 12 80463087 to 80463730 643 CpG island CpG island 4815
Exd2 12 80463095 to 80498135 35040 + protein coding gene exonuclease 3'-5' domain containing 2
Tssr114139 12 80463165 to 80463179 14 + TSS region transcription start site region 114139
Tssr114140 12 80463182 to 80463200 18 + TSS region transcription start site region 114140
Tssr114141 12 80463204 to 80463257 53 + TSS region transcription start site region 114141
Tssr114142 12 80480229 to 80480244 15 + TSS region transcription start site region 114142
Tssr114143 12 80480274 to 80480284 10 + TSS region transcription start site region 114143
Tssr114144 12 80507204 to 80507207 3 + TSS region transcription start site region 114144
2310002D06Rik 12 80507206 to 80517954 10748 + lincRNA gene RIKEN cDNA 2310002D06 gene
Gm26777 12 80509945 to 80518151 8206 - bidirectional promoter lncRNA gene predicted gene, 26777
Cpgi4816 12 80518241 to 80520297 2056 CpG island CpG island 4816
Galnt16 12 80518277 to 80603896 85619 + protein coding gene polypeptide N-acetylgalactosaminyltransferase 16
Tssr114145 12 80518557 to 80518575 18 + TSS region transcription start site region 114145
Tssr114146 12 80519007 to 80519087 80 + TSS region transcription start site region 114146
Tssr114147 12 80519221 to 80519230 9 + TSS region transcription start site region 114147
4933406B15Rik 12 80583011 to 80597140 14129 - antisense lncRNA gene RIKEN cDNA 4933406B15 gene
D12Mit149 12 80588172 to 80588302 130 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 149
Tssr116889 12 80597124 to 80597139 15 - TSS region transcription start site region 116889