Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:80384027-81324031

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153 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lmblgq5 12 17546446 to 80910109 63363663 QTL limb length QTL 5
Dcaf5 12 80335848 to 80436601 100753 - protein coding gene DDB1 and CUL4 associated factor 5
Mir1843a 12 80391613 to 80391677 64 - miRNA gene microRNA 1843a
Scarna3b 12 80391614 to 80391737 123 - snoRNA gene small Cajal body-specific RNA 3B
Cpgi4814 12 80434719 to 80437122 2403 CpG island CpG island 4814
Tssr114137 12 80435083 to 80435146 63 + TSS region transcription start site region 114137
Tssr114138 12 80435171 to 80435235 64 + TSS region transcription start site region 114138
Gm30025 12 80435209 to 80435936 727 + antisense lncRNA gene predicted gene, 30025
Tssr116883 12 80436407 to 80436456 49 - TSS region transcription start site region 116883
Tssr116884 12 80436541 to 80436566 25 - TSS region transcription start site region 116884
Tssr116885 12 80436571 to 80436603 32 - TSS region transcription start site region 116885
Tssr116886 12 80436792 to 80436825 33 - TSS region transcription start site region 116886
Tssr116887 12 80441487 to 80441518 31 - TSS region transcription start site region 116887
Tssr116888 12 80441545 to 80441546 1 - TSS region transcription start site region 116888
Gm46363 12 80450478 to 80459126 8648 - lncRNA gene predicted gene, 46363
Gm30076 12 80459164 to 80463219 4055 - lncRNA gene predicted gene, 30076
Cpgi4815 12 80463087 to 80463730 643 CpG island CpG island 4815
Exd2 12 80463095 to 80498135 35040 + protein coding gene exonuclease 3'-5' domain containing 2
Tssr114139 12 80463165 to 80463179 14 + TSS region transcription start site region 114139
Tssr114140 12 80463182 to 80463200 18 + TSS region transcription start site region 114140
Tssr114141 12 80463204 to 80463257 53 + TSS region transcription start site region 114141
Tssr114142 12 80480229 to 80480244 15 + TSS region transcription start site region 114142
Tssr114143 12 80480274 to 80480284 10 + TSS region transcription start site region 114143
Tssr114144 12 80507204 to 80507207 3 + TSS region transcription start site region 114144
2310002D06Rik 12 80507206 to 80517954 10748 + lincRNA gene RIKEN cDNA 2310002D06 gene
Gm26777 12 80509945 to 80518151 8206 - bidirectional promoter lncRNA gene predicted gene, 26777
Cpgi4816 12 80518241 to 80520297 2056 CpG island CpG island 4816
Galnt16 12 80518277 to 80603896 85619 + protein coding gene polypeptide N-acetylgalactosaminyltransferase 16
Tssr114145 12 80518557 to 80518575 18 + TSS region transcription start site region 114145
Tssr114146 12 80519007 to 80519087 80 + TSS region transcription start site region 114146
Tssr114147 12 80519221 to 80519230 9 + TSS region transcription start site region 114147
4933406B15Rik 12 80583011 to 80597140 14129 - antisense lncRNA gene RIKEN cDNA 4933406B15 gene
D12Mit149 12 80588172 to 80588302 130 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 149
Tssr116889 12 80597124 to 80597139 15 - TSS region transcription start site region 116889
Gm46364 12 80613296 to 80613614 318 + pseudogene predicted gene, 46364
Gm23817 12 80622830 to 80622933 103 - snRNA gene predicted gene, 23817
Gm47852 12 80629294 to 80629558 264 - pseudogene predicted gene, 47852
Erh 12 80634023 to 80643871 9848 - protein coding gene ERH mRNA splicing and mitosis factor
Gm47879 12 80635992 to 80637371 1379 + antisense lncRNA gene predicted gene, 47879
Cpgi4817 12 80643262 to 80644813 1551 CpG island CpG island 4817
Tssr116890 12 80643799 to 80643857 58 - TSS region transcription start site region 116890
Tssr116891 12 80643858 to 80643869 11 - TSS region transcription start site region 116891
Slc39a9 12 80644163 to 80683342 39179 + protein coding gene solute carrier family 39 (zinc transporter), member 9
Tssr114148 12 80644212 to 80644265 53 + TSS region transcription start site region 114148
Tssr114149 12 80644470 to 80644496 26 + TSS region transcription start site region 114149
Tssr114150 12 80644502 to 80644525 23 + TSS region transcription start site region 114150
Gm47874 12 80648637 to 80649211 574 - pseudogene predicted gene, 47874
Plekhd1os 12 80686370 to 80692466 6096 - antisense lncRNA gene pleckstrin homology domain containing, family D (with coiled-coil domains) member 1, opposite strand
Cpgi4818 12 80692127 to 80693297 1170 CpG island CpG island 4818
Plekhd1 12 80692591 to 80724214 31623 + protein coding gene pleckstrin homology domain containing, family D (with coiled-coil domains) member 1
Tssr114151 12 80692643 to 80692717 74 + TSS region transcription start site region 114151
Cpgi4819 12 80721321 to 80721600 279 CpG island CpG island 4819
Tssr114152 12 80721696 to 80721719 23 + TSS region transcription start site region 114152
Tssr114153 12 80721727 to 80721757 30 + TSS region transcription start site region 114153
Ccdc177 12 80755447 to 80760715 5268 - protein coding gene coiled-coil domain containing 177
Cpgi4820 12 80756999 to 80759918 2919 CpG island CpG island 4820
Gm26796 12 80758406 to 80762793 4387 + antisense lncRNA gene predicted gene, 26796
Cpgi4821 12 80760192 to 80760612 420 CpG island CpG island 4821
Tssr116892 12 80760532 to 80760546 14 - TSS region transcription start site region 116892
Tssr116893 12 80760682 to 80760730 48 - TSS region transcription start site region 116893
Cpgi4822 12 80778245 to 80778419 174 CpG island CpG island 4822
Tssr116894 12 80780496 to 80780506 10 - TSS region transcription start site region 116894
Gm47941 12 80787944 to 80790343 2399 - bidirectional promoter lncRNA gene predicted gene, 47941
Cpgi4823 12 80790195 to 80791362 1167 CpG island CpG island 4823
Susd6 12 80790532 to 80880833 90301 + protein coding gene sushi domain containing 6
Tssr114154 12 80790547 to 80790574 27 + TSS region transcription start site region 114154
Tssr114155 12 80790584 to 80790595 11 + TSS region transcription start site region 114155
Tssr116895 12 80791179 to 80791196 17 - TSS region transcription start site region 116895
Tssr114156 12 80791431 to 80791443 12 + TSS region transcription start site region 114156
Tssr114157 12 80791459 to 80791466 7 + TSS region transcription start site region 114157
D12Mit288 12 80791635 to 80791756 121 DNA segment DNA Segment, Chr 12, Massachusetts Institute of Technology 288
Tssr116896 12 80792992 to 80793036 44 - TSS region transcription start site region 116896
Tssr114158 12 80793095 to 80793110 15 + TSS region transcription start site region 114158
Tssr114159 12 80793339 to 80793355 16 + TSS region transcription start site region 114159
Tssr114160 12 80800588 to 80800593 5 + TSS region transcription start site region 114160
Tssr3880 12 80816649 to 80816654 5 + TSS region transcription start site region 3880
Tssr114161 12 80816677 to 80816684 7 + TSS region transcription start site region 114161
Tssr114162 12 80816687 to 80816696 9 + TSS region transcription start site region 114162
Tssr114163 12 80816727 to 80816743 16 + TSS region transcription start site region 114163
Tssr114164 12 80819405 to 80819451 46 + TSS region transcription start site region 114164
Tssr114165 12 80827607 to 80827619 12 + TSS region transcription start site region 114165
Tssr114166 12 80827713 to 80827724 11 + TSS region transcription start site region 114166
Tssr114167 12 80833869 to 80833877 8 + TSS region transcription start site region 114167
Tssr114168 12 80847145 to 80847158 13 + TSS region transcription start site region 114168
Tssr114169 12 80854027 to 80854031 4 + TSS region transcription start site region 114169
Tssr114170 12 80854048 to 80854061 13 + TSS region transcription start site region 114170
Tssr114171 12 80854097 to 80854110 13 + TSS region transcription start site region 114171
Tssr114172 12 80859110 to 80859111 1 + TSS region transcription start site region 114172
5830400J07Rik 12 80864827 to 80866283 1456 unclassified gene RIKEN cDNA 5830400J07 gene
Tssr114173 12 80864931 to 80864940 9 + TSS region transcription start site region 114173
Tssr114174 12 80877377 to 80877399 22 + TSS region transcription start site region 114174
Tssr114175 12 80877469 to 80877490 21 + TSS region transcription start site region 114175
Tssr114176 12 80878316 to 80878330 14 + TSS region transcription start site region 114176
Tssr114177 12 80878477 to 80878488 11 + TSS region transcription start site region 114177
Gm26545 12 80885549 to 80887674 2125 - lincRNA gene predicted gene, 26545
Tssr114178 12 80885840 to 80885853 13 + TSS region transcription start site region 114178
D12Mit5 12 80909934 to 80910109 175 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 5
Par3 12 80909934 to 80910109 175 QTL pulmonary adenoma resistance 3
Gm23298 12 80911477 to 80911583 106 + snRNA gene predicted gene, 23298
1700052I22Rik 12 80923432 to 80924447 1015 - lincRNA gene RIKEN cDNA 1700052I22 gene
Tssr116897 12 80924410 to 80924425 15 - TSS region transcription start site region 116897
Tssr116898 12 80931445 to 80931451 6 - TSS region transcription start site region 116898
Gm20337 12 80942673 to 80945396 2723 - bidirectional promoter lncRNA gene predicted gene, 20337
Cpgi4824 12 80945286 to 80946548 1262 CpG island CpG island 4824
Tssr116899 12 80945338 to 80945354 16 - TSS region transcription start site region 116899
Tssr114179 12 80945500 to 80945505 5 + TSS region transcription start site region 114179
Srsf5 12 80945504 to 80950507 5003 + protein coding gene serine/arginine-rich splicing factor 5
Tssr114180 12 80945523 to 80945541 18 + TSS region transcription start site region 114180
Tssr114181 12 80946194 to 80946215 21 + TSS region transcription start site region 114181
Tssr114182 12 80946216 to 80946226 10 + TSS region transcription start site region 114182
Tssr114183 12 80946289 to 80946308 19 + TSS region transcription start site region 114183
Tssr114184 12 80947474 to 80947519 45 + TSS region transcription start site region 114184
Tssr114185 12 80948585 to 80948638 53 + TSS region transcription start site region 114185
Tssr114186 12 80948642 to 80948654 12 + TSS region transcription start site region 114186
Tssr114187 12 80948677 to 80948711 34 + TSS region transcription start site region 114187
Tssr114188 12 80948751 to 80948755 4 + TSS region transcription start site region 114188
Tssr114189 12 80948823 to 80948841 18 + TSS region transcription start site region 114189
Slc10a1 12 80953185 to 80968700 15515 - protein coding gene solute carrier family 10 (sodium/bile acid cotransporter family), member 1
Tssr116900 12 80956031 to 80956057 26 - TSS region transcription start site region 116900
Tssr116901 12 80958050 to 80958061 11 - TSS region transcription start site region 116901
Tssr116902 12 80958083 to 80958102 19 - TSS region transcription start site region 116902
Tssr116903 12 80958129 to 80958138 9 - TSS region transcription start site region 116903
Tssr116904 12 80958160 to 80958202 42 - TSS region transcription start site region 116904
Tssr116905 12 80960504 to 80960505 1 - TSS region transcription start site region 116905
Tssr116906 12 80960525 to 80960536 11 - TSS region transcription start site region 116906
Tssr116907 12 80960544 to 80960559 15 - TSS region transcription start site region 116907
Tssr116908 12 80960599 to 80960629 30 - TSS region transcription start site region 116908
Tssr116909 12 80960654 to 80960664 10 - TSS region transcription start site region 116909
Tssr116910 12 80967632 to 80967641 9 - TSS region transcription start site region 116910
Tssr116911 12 80967981 to 80967993 12 - TSS region transcription start site region 116911
Tssr116912 12 80967995 to 80968032 37 - TSS region transcription start site region 116912
Tssr116913 12 80968036 to 80968053 17 - TSS region transcription start site region 116913
Tssr116914 12 80968075 to 80968086 11 - TSS region transcription start site region 116914
Tssr116915 12 80968787 to 80968799 12 - TSS region transcription start site region 116915
Cpgi4825 12 80998714 to 80999235 521 CpG island CpG island 4825
Cpgi4826 12 81026467 to 81027739 1272 CpG island CpG island 4826
Tssr114190 12 81026800 to 81026818 18 + TSS region transcription start site region 114190
Smoc1 12 81026808 to 81186414 159606 + protein coding gene SPARC related modular calcium binding 1
Tssr114191 12 81036180 to 81036184 4 + TSS region transcription start site region 114191
Tssr114192 12 81054752 to 81054757 5 + TSS region transcription start site region 114192
Gm18031 12 81102827 to 81103506 679 + pseudogene predicted gene, 18031
Tssr114193 12 81152421 to 81152432 11 + TSS region transcription start site region 114193
Tssr114194 12 81152479 to 81152497 18 + TSS region transcription start site region 114194
Mir3067 12 81166151 to 81166234 83 + miRNA gene microRNA 3067
Tssr114195 12 81183879 to 81183889 10 + TSS region transcription start site region 114195
Slc8a3 12 81197915 to 81333180 135265 - protein coding gene solute carrier family 8 (sodium/calcium exchanger), member 3
Gm3693 12 81227580 to 81242492 14912 + antisense lncRNA gene predicted gene 3693
2310068G24Rik 12 81243457 to 81245070 1613 unclassified gene RIKEN cDNA 2310068G24 gene
Tssr116916 12 81287110 to 81287111 1 - TSS region transcription start site region 116916
W6q10 12 113419913 to 80909934 -32509979 QTL weight 6 weeks QTL 10
Lvrq10 12 113419913 to 80909934 -32509979 QTL liver weight QTL 10
Tailaq1 12 113419913 to 80909934 -32509979 QTL tail length adjusted QTL 1
Egq10 12 113419913 to 80909934 -32509979 QTL early growth QTL 10