Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:80225848-80546601

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45 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Actn1 12 80167547 to 80260371 92824 - protein coding gene actinin, alpha 1
Tssr116875 12 80231472 to 80231498 26 - TSS region transcription start site region 116875
Cpgi4813 12 80258965 to 80261052 2087 CpG island CpG island 4813
Gm47766 12 80259443 to 80260557 1114 + antisense lncRNA gene predicted gene, 47766
Tssr116876 12 80260142 to 80260209 67 - TSS region transcription start site region 116876
Tssr116877 12 80260314 to 80260325 11 - TSS region transcription start site region 116877
Tssr116878 12 80260335 to 80260352 17 - TSS region transcription start site region 116878
Tssr116879 12 80260356 to 80260371 15 - TSS region transcription start site region 116879
Tssr116880 12 80260379 to 80260400 21 - TSS region transcription start site region 116880
Tssr116881 12 80260496 to 80260505 9 - TSS region transcription start site region 116881
Tssr116882 12 80260520 to 80260543 23 - TSS region transcription start site region 116882
Gm29952 12 80270725 to 80281934 11209 + lncRNA gene predicted gene, 29952
Tssr114136 12 80272064 to 80272107 43 + TSS region transcription start site region 114136
Tssr3878 12 80273409 to 80273420 11 + TSS region transcription start site region 3878
Dcaf5 12 80335848 to 80436601 100753 - protein coding gene DDB1 and CUL4 associated factor 5
Tssr3879 12 80367481 to 80367482 1 + TSS region transcription start site region 3879
Mir1843a 12 80391613 to 80391677 64 - miRNA gene microRNA 1843a
Scarna3b 12 80391614 to 80391737 123 - snoRNA gene small Cajal body-specific RNA 3B
Cpgi4814 12 80434719 to 80437122 2403 CpG island CpG island 4814
Tssr114137 12 80435083 to 80435146 63 + TSS region transcription start site region 114137
Tssr114138 12 80435171 to 80435235 64 + TSS region transcription start site region 114138
Gm30025 12 80435209 to 80435936 727 + antisense lncRNA gene predicted gene, 30025
Tssr116883 12 80436407 to 80436456 49 - TSS region transcription start site region 116883
Tssr116884 12 80436541 to 80436566 25 - TSS region transcription start site region 116884
Tssr116885 12 80436571 to 80436603 32 - TSS region transcription start site region 116885
Tssr116886 12 80436792 to 80436825 33 - TSS region transcription start site region 116886
Tssr116887 12 80441487 to 80441518 31 - TSS region transcription start site region 116887
Tssr116888 12 80441545 to 80441546 1 - TSS region transcription start site region 116888
Gm46363 12 80450478 to 80459126 8648 - lncRNA gene predicted gene, 46363
Gm30076 12 80459164 to 80463219 4055 - lncRNA gene predicted gene, 30076
Cpgi4815 12 80463087 to 80463730 643 CpG island CpG island 4815
Exd2 12 80463095 to 80498135 35040 + protein coding gene exonuclease 3'-5' domain containing 2
Tssr114139 12 80463165 to 80463179 14 + TSS region transcription start site region 114139
Tssr114140 12 80463182 to 80463200 18 + TSS region transcription start site region 114140
Tssr114141 12 80463204 to 80463257 53 + TSS region transcription start site region 114141
Tssr114142 12 80480229 to 80480244 15 + TSS region transcription start site region 114142
Tssr114143 12 80480274 to 80480284 10 + TSS region transcription start site region 114143
Tssr114144 12 80507204 to 80507207 3 + TSS region transcription start site region 114144
2310002D06Rik 12 80507206 to 80517954 10748 + lincRNA gene RIKEN cDNA 2310002D06 gene
Gm26777 12 80509945 to 80518151 8206 - bidirectional promoter lncRNA gene predicted gene, 26777
Cpgi4816 12 80518241 to 80520297 2056 CpG island CpG island 4816
Galnt16 12 80518277 to 80603896 85619 + protein coding gene polypeptide N-acetylgalactosaminyltransferase 16
Tssr114145 12 80518557 to 80518575 18 + TSS region transcription start site region 114145
Tssr114146 12 80519007 to 80519087 80 + TSS region transcription start site region 114146
Tssr114147 12 80519221 to 80519230 9 + TSS region transcription start site region 114147