Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:80071487-80811518

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147 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm36660 12 80018415 to 80081434 63019 - lincRNA gene predicted gene, 36660
Gm47752 12 80091367 to 80101172 9805 + lincRNA gene predicted gene, 47752
Zfp36l1 12 80107760 to 80113013 5253 - protein coding gene zinc finger protein 36, C3H type-like 1
Gm26669 12 80108034 to 80113000 4966 + lincRNA gene predicted gene, 26669
Tssr116843 12 80108847 to 80108871 24 - TSS region transcription start site region 116843
Tssr116844 12 80109533 to 80109579 46 - TSS region transcription start site region 116844
Cpgi4806 12 80109696 to 80110559 863 CpG island CpG island 4806
Tssr116845 12 80109727 to 80109748 21 - TSS region transcription start site region 116845
Tssr116846 12 80109774 to 80109798 24 - TSS region transcription start site region 116846
Tssr114126 12 80109884 to 80109907 23 + TSS region transcription start site region 114126
Tssr116847 12 80109912 to 80109955 43 - TSS region transcription start site region 116847
Tssr116848 12 80110021 to 80110049 28 - TSS region transcription start site region 116848
Tssr116849 12 80110153 to 80110169 16 - TSS region transcription start site region 116849
Tssr116850 12 80110201 to 80110213 12 - TSS region transcription start site region 116850
Tssr116851 12 80110318 to 80110325 7 - TSS region transcription start site region 116851
Tssr116852 12 80110370 to 80110395 25 - TSS region transcription start site region 116852
Tssr116853 12 80110442 to 80110453 11 - TSS region transcription start site region 116853
Tssr116854 12 80110456 to 80110470 14 - TSS region transcription start site region 116854
Cpgi4807 12 80112189 to 80113028 839 CpG island CpG island 4807
Tssr116855 12 80113002 to 80113019 17 - TSS region transcription start site region 116855
Tssr116856 12 80113230 to 80113232 2 - TSS region transcription start site region 116856
Tssr114127 12 80113394 to 80113405 11 + TSS region transcription start site region 114127
Cpgi4808 12 80113782 to 80114772 990 CpG island CpG island 4808
Tssr116857 12 80114471 to 80114486 15 - TSS region transcription start site region 116857
Tssr116858 12 80114519 to 80114536 17 - TSS region transcription start site region 116858
Cpgi4809 12 80115033 to 80116327 1294 CpG island CpG island 4809
Tssr114128 12 80115131 to 80115178 47 + TSS region transcription start site region 114128
Tssr116859 12 80115203 to 80115225 22 - TSS region transcription start site region 116859
Tssr116860 12 80115294 to 80115307 13 - TSS region transcription start site region 116860
Tssr116861 12 80115480 to 80115494 14 - TSS region transcription start site region 116861
Tssr116862 12 80115695 to 80115711 16 - TSS region transcription start site region 116862
Tssr114129 12 80115849 to 80115936 87 + TSS region transcription start site region 114129
1300014J16Rik 12 80115863 to 80117199 1336 + lincRNA gene RIKEN cDNA 1300014J16 gene
Tssr116863 12 80116919 to 80116941 22 - TSS region transcription start site region 116863
2310015A10Rik 12 80120546 to 80132844 12298 - lncRNA gene RIKEN cDNA 2310015A10 gene
Tssr116864 12 80128459 to 80128466 7 - TSS region transcription start site region 116864
Tssr114130 12 80130891 to 80130909 18 + TSS region transcription start site region 114130
Cpgi4810 12 80132105 to 80133106 1001 CpG island CpG island 4810
Tssr116865 12 80132274 to 80132278 4 - TSS region transcription start site region 116865
Tssr116866 12 80132802 to 80132821 19 - TSS region transcription start site region 116866
Tssr116867 12 80135743 to 80135750 7 - TSS region transcription start site region 116867
Tssr116868 12 80139268 to 80139270 2 - TSS region transcription start site region 116868
Tssr116869 12 80139336 to 80139341 5 - TSS region transcription start site region 116869
Cpgi4811 12 80161768 to 80162010 242 CpG island CpG island 4811
Actn1 12 80167547 to 80260371 92824 - protein coding gene actinin, alpha 1
Tssr116870 12 80167818 to 80167837 19 - TSS region transcription start site region 116870
Tssr116871 12 80168159 to 80168179 20 - TSS region transcription start site region 116871
Cpgi4812 12 80168163 to 80168675 512 CpG island CpG island 4812
Tssr116872 12 80168183 to 80168197 14 - TSS region transcription start site region 116872
Tssr114131 12 80168288 to 80168331 43 + TSS region transcription start site region 114131
Tssr114132 12 80168938 to 80168977 39 + TSS region transcription start site region 114132
Tssr116873 12 80168939 to 80168969 30 - TSS region transcription start site region 116873
Tssr114133 12 80174453 to 80174480 27 + TSS region transcription start site region 114133
Tssr116874 12 80181972 to 80181977 5 - TSS region transcription start site region 116874
Gm47765 12 80190160 to 80191428 1268 - unclassified non-coding RNA gene predicted gene, 47765
Strm 12 80190582 to 80194442 3860 unclassified gene striamin
Gm47767 12 80209243 to 80211916 2673 + antisense lncRNA gene predicted gene, 47767
Tssr114134 12 80210188 to 80210197 9 + TSS region transcription start site region 114134
Tssr114135 12 80211141 to 80211148 7 + TSS region transcription start site region 114135
Tssr116875 12 80231472 to 80231498 26 - TSS region transcription start site region 116875
Cpgi4813 12 80258965 to 80261052 2087 CpG island CpG island 4813
Gm47766 12 80259443 to 80260557 1114 + antisense lncRNA gene predicted gene, 47766
Tssr116876 12 80260142 to 80260209 67 - TSS region transcription start site region 116876
Tssr116877 12 80260314 to 80260325 11 - TSS region transcription start site region 116877
Tssr116878 12 80260335 to 80260352 17 - TSS region transcription start site region 116878
Tssr116879 12 80260356 to 80260371 15 - TSS region transcription start site region 116879
Tssr116880 12 80260379 to 80260400 21 - TSS region transcription start site region 116880
Tssr116881 12 80260496 to 80260505 9 - TSS region transcription start site region 116881
Tssr116882 12 80260520 to 80260543 23 - TSS region transcription start site region 116882
Gm29952 12 80270725 to 80281934 11209 + lncRNA gene predicted gene, 29952
Tssr114136 12 80272064 to 80272107 43 + TSS region transcription start site region 114136
Tssr3878 12 80273409 to 80273420 11 + TSS region transcription start site region 3878
Dcaf5 12 80335848 to 80436601 100753 - protein coding gene DDB1 and CUL4 associated factor 5
Tssr3879 12 80367481 to 80367482 1 + TSS region transcription start site region 3879
Mir1843a 12 80391613 to 80391677 64 - miRNA gene microRNA 1843a
Scarna3b 12 80391614 to 80391737 123 - snoRNA gene small Cajal body-specific RNA 3B
Cpgi4814 12 80434719 to 80437122 2403 CpG island CpG island 4814
Tssr114137 12 80435083 to 80435146 63 + TSS region transcription start site region 114137
Tssr114138 12 80435171 to 80435235 64 + TSS region transcription start site region 114138
Gm30025 12 80435209 to 80435936 727 + antisense lncRNA gene predicted gene, 30025
Tssr116883 12 80436407 to 80436456 49 - TSS region transcription start site region 116883
Tssr116884 12 80436541 to 80436566 25 - TSS region transcription start site region 116884
Tssr116885 12 80436571 to 80436603 32 - TSS region transcription start site region 116885
Tssr116886 12 80436792 to 80436825 33 - TSS region transcription start site region 116886
Tssr116887 12 80441487 to 80441518 31 - TSS region transcription start site region 116887
Tssr116888 12 80441545 to 80441546 1 - TSS region transcription start site region 116888
Gm46363 12 80450478 to 80459126 8648 - lncRNA gene predicted gene, 46363
Gm30076 12 80459164 to 80463219 4055 - lncRNA gene predicted gene, 30076
Cpgi4815 12 80463087 to 80463730 643 CpG island CpG island 4815
Exd2 12 80463095 to 80498135 35040 + protein coding gene exonuclease 3'-5' domain containing 2
Tssr114139 12 80463165 to 80463179 14 + TSS region transcription start site region 114139
Tssr114140 12 80463182 to 80463200 18 + TSS region transcription start site region 114140
Tssr114141 12 80463204 to 80463257 53 + TSS region transcription start site region 114141
Tssr114142 12 80480229 to 80480244 15 + TSS region transcription start site region 114142
Tssr114143 12 80480274 to 80480284 10 + TSS region transcription start site region 114143
Tssr114144 12 80507204 to 80507207 3 + TSS region transcription start site region 114144
2310002D06Rik 12 80507206 to 80517954 10748 + lincRNA gene RIKEN cDNA 2310002D06 gene
Gm26777 12 80509945 to 80518151 8206 - bidirectional promoter lncRNA gene predicted gene, 26777
Cpgi4816 12 80518241 to 80520297 2056 CpG island CpG island 4816
Galnt16 12 80518277 to 80603896 85619 + protein coding gene polypeptide N-acetylgalactosaminyltransferase 16
Tssr114145 12 80518557 to 80518575 18 + TSS region transcription start site region 114145
Tssr114146 12 80519007 to 80519087 80 + TSS region transcription start site region 114146
Tssr114147 12 80519221 to 80519230 9 + TSS region transcription start site region 114147
4933406B15Rik 12 80583011 to 80597140 14129 - antisense lncRNA gene RIKEN cDNA 4933406B15 gene
D12Mit149 12 80588172 to 80588302 130 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 149
Tssr116889 12 80597124 to 80597139 15 - TSS region transcription start site region 116889
Gm46364 12 80613296 to 80613614 318 + pseudogene predicted gene, 46364
Gm23817 12 80622830 to 80622933 103 - snRNA gene predicted gene, 23817
Gm47852 12 80629294 to 80629558 264 - pseudogene predicted gene, 47852
Erh 12 80634023 to 80643871 9848 - protein coding gene ERH mRNA splicing and mitosis factor
Gm47879 12 80635992 to 80637371 1379 + antisense lncRNA gene predicted gene, 47879
Cpgi4817 12 80643262 to 80644813 1551 CpG island CpG island 4817
Tssr116890 12 80643799 to 80643857 58 - TSS region transcription start site region 116890
Tssr116891 12 80643858 to 80643869 11 - TSS region transcription start site region 116891
Slc39a9 12 80644163 to 80683342 39179 + protein coding gene solute carrier family 39 (zinc transporter), member 9
Tssr114148 12 80644212 to 80644265 53 + TSS region transcription start site region 114148
Tssr114149 12 80644470 to 80644496 26 + TSS region transcription start site region 114149
Tssr114150 12 80644502 to 80644525 23 + TSS region transcription start site region 114150
Gm47874 12 80648637 to 80649211 574 - pseudogene predicted gene, 47874
Plekhd1os 12 80686370 to 80692466 6096 - antisense lncRNA gene pleckstrin homology domain containing, family D (with coiled-coil domains) member 1, opposite strand
Cpgi4818 12 80692127 to 80693297 1170 CpG island CpG island 4818
Plekhd1 12 80692591 to 80724214 31623 + protein coding gene pleckstrin homology domain containing, family D (with coiled-coil domains) member 1
Tssr114151 12 80692643 to 80692717 74 + TSS region transcription start site region 114151
Cpgi4819 12 80721321 to 80721600 279 CpG island CpG island 4819
Tssr114152 12 80721696 to 80721719 23 + TSS region transcription start site region 114152
Tssr114153 12 80721727 to 80721757 30 + TSS region transcription start site region 114153
Ccdc177 12 80755447 to 80760715 5268 - protein coding gene coiled-coil domain containing 177
Cpgi4820 12 80756999 to 80759918 2919 CpG island CpG island 4820
Gm26796 12 80758406 to 80762793 4387 + antisense lncRNA gene predicted gene, 26796
Cpgi4821 12 80760192 to 80760612 420 CpG island CpG island 4821
Tssr116892 12 80760532 to 80760546 14 - TSS region transcription start site region 116892
Tssr116893 12 80760682 to 80760730 48 - TSS region transcription start site region 116893
Cpgi4822 12 80778245 to 80778419 174 CpG island CpG island 4822
Tssr116894 12 80780496 to 80780506 10 - TSS region transcription start site region 116894
Gm47941 12 80787944 to 80790343 2399 - bidirectional promoter lncRNA gene predicted gene, 47941
Cpgi4823 12 80790195 to 80791362 1167 CpG island CpG island 4823
Susd6 12 80790532 to 80880833 90301 + protein coding gene sushi domain containing 6
Tssr114154 12 80790547 to 80790574 27 + TSS region transcription start site region 114154
Tssr114155 12 80790584 to 80790595 11 + TSS region transcription start site region 114155
Tssr116895 12 80791179 to 80791196 17 - TSS region transcription start site region 116895
Tssr114156 12 80791431 to 80791443 12 + TSS region transcription start site region 114156
Tssr114157 12 80791459 to 80791466 7 + TSS region transcription start site region 114157
D12Mit288 12 80791635 to 80791756 121 DNA segment DNA Segment, Chr 12, Massachusetts Institute of Technology 288
Tssr116896 12 80792992 to 80793036 44 - TSS region transcription start site region 116896
Tssr114158 12 80793095 to 80793110 15 + TSS region transcription start site region 114158
Tssr114159 12 80793339 to 80793355 16 + TSS region transcription start site region 114159
Tssr114160 12 80800588 to 80800593 5 + TSS region transcription start site region 114160