Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:8004696-9034733

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226 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Apob 12 7977648 to 8016835 39187 + protein coding gene apolipoprotein B
Tssr112626 12 8004906 to 8004918 12 + TSS region transcription start site region 112626
Tssr112627 12 8004977 to 8004988 11 + TSS region transcription start site region 112627
Tssr112628 12 8006081 to 8006091 10 + TSS region transcription start site region 112628
Tssr112629 12 8006245 to 8006252 7 + TSS region transcription start site region 112629
Tssr112630 12 8006384 to 8006392 8 + TSS region transcription start site region 112630
Tssr112631 12 8006617 to 8006629 12 + TSS region transcription start site region 112631
Tssr112632 12 8006651 to 8006660 9 + TSS region transcription start site region 112632
Tssr112633 12 8006716 to 8006736 20 + TSS region transcription start site region 112633
Tssr112634 12 8006867 to 8006881 14 + TSS region transcription start site region 112634
Tssr112635 12 8006958 to 8006967 9 + TSS region transcription start site region 112635
Tssr112636 12 8007429 to 8007432 3 + TSS region transcription start site region 112636
Tssr112637 12 8007502 to 8007512 10 + TSS region transcription start site region 112637
Tssr112638 12 8007574 to 8007577 3 + TSS region transcription start site region 112638
Tssr112639 12 8007801 to 8007819 18 + TSS region transcription start site region 112639
Tssr112640 12 8007854 to 8007861 7 + TSS region transcription start site region 112640
Tssr112641 12 8007908 to 8007913 5 + TSS region transcription start site region 112641
Tssr112642 12 8007960 to 8007987 27 + TSS region transcription start site region 112642
Tssr112643 12 8008067 to 8008076 9 + TSS region transcription start site region 112643
Tssr112644 12 8008280 to 8008290 10 + TSS region transcription start site region 112644
Tssr112645 12 8008382 to 8008392 10 + TSS region transcription start site region 112645
Tssr112646 12 8008408 to 8008421 13 + TSS region transcription start site region 112646
Tssr112647 12 8008582 to 8008593 11 + TSS region transcription start site region 112647
Tssr112648 12 8008594 to 8008615 21 + TSS region transcription start site region 112648
Tssr3782 12 8008696 to 8008712 16 + TSS region transcription start site region 3782
Tssr112649 12 8009086 to 8009097 11 + TSS region transcription start site region 112649
Tssr112650 12 8009145 to 8009177 32 + TSS region transcription start site region 112650
Tssr112651 12 8009216 to 8009229 13 + TSS region transcription start site region 112651
Tssr112652 12 8009240 to 8009259 19 + TSS region transcription start site region 112652
Tssr112653 12 8009267 to 8009278 11 + TSS region transcription start site region 112653
Tssr112654 12 8009283 to 8009292 9 + TSS region transcription start site region 112654
Tssr112655 12 8009301 to 8009315 14 + TSS region transcription start site region 112655
Tssr112656 12 8009323 to 8009335 12 + TSS region transcription start site region 112656
Tssr112657 12 8009338 to 8009349 11 + TSS region transcription start site region 112657
Tssr112658 12 8009371 to 8009382 11 + TSS region transcription start site region 112658
Tssr112659 12 8009424 to 8009461 37 + TSS region transcription start site region 112659
Tssr112660 12 8009576 to 8009585 9 + TSS region transcription start site region 112660
Tssr112661 12 8009807 to 8009820 13 + TSS region transcription start site region 112661
Tssr112662 12 8010051 to 8010061 10 + TSS region transcription start site region 112662
Tssr112663 12 8010286 to 8010302 16 + TSS region transcription start site region 112663
Tssr112664 12 8010311 to 8010326 15 + TSS region transcription start site region 112664
Tssr112665 12 8010476 to 8010481 5 + TSS region transcription start site region 112665
Tssr112666 12 8010485 to 8010501 16 + TSS region transcription start site region 112666
Tssr112667 12 8010532 to 8010550 18 + TSS region transcription start site region 112667
Tssr112668 12 8010670 to 8010686 16 + TSS region transcription start site region 112668
Tssr112669 12 8010755 to 8010773 18 + TSS region transcription start site region 112669
Tssr112670 12 8010808 to 8010829 21 + TSS region transcription start site region 112670
Tssr112671 12 8010923 to 8010932 9 + TSS region transcription start site region 112671
Tssr112672 12 8011502 to 8011514 12 + TSS region transcription start site region 112672
Tssr112673 12 8011545 to 8011582 37 + TSS region transcription start site region 112673
Tssr112674 12 8011646 to 8011657 11 + TSS region transcription start site region 112674
Tssr112675 12 8011673 to 8011689 16 + TSS region transcription start site region 112675
Tssr112676 12 8011776 to 8011785 9 + TSS region transcription start site region 112676
Tssr112677 12 8011926 to 8011937 11 + TSS region transcription start site region 112677
Tssr112678 12 8012050 to 8012059 9 + TSS region transcription start site region 112678
Tssr112679 12 8012075 to 8012085 10 + TSS region transcription start site region 112679
Tssr112680 12 8012094 to 8012101 7 + TSS region transcription start site region 112680
Tssr112681 12 8012141 to 8012151 10 + TSS region transcription start site region 112681
Tssr112682 12 8012154 to 8012166 12 + TSS region transcription start site region 112682
Tssr112683 12 8012191 to 8012200 9 + TSS region transcription start site region 112683
Tssr112684 12 8012235 to 8012244 9 + TSS region transcription start site region 112684
Tssr112685 12 8012283 to 8012307 24 + TSS region transcription start site region 112685
Tssr112686 12 8012331 to 8012338 7 + TSS region transcription start site region 112686
Tssr112687 12 8012411 to 8012419 8 + TSS region transcription start site region 112687
Tssr112688 12 8012512 to 8012522 10 + TSS region transcription start site region 112688
Tssr112689 12 8012554 to 8012562 8 + TSS region transcription start site region 112689
Tssr112690 12 8012579 to 8012588 9 + TSS region transcription start site region 112690
Tssr112691 12 8012630 to 8012644 14 + TSS region transcription start site region 112691
Tssr112692 12 8012666 to 8012677 11 + TSS region transcription start site region 112692
Tssr112693 12 8012685 to 8012696 11 + TSS region transcription start site region 112693
Tssr112694 12 8012823 to 8012832 9 + TSS region transcription start site region 112694
Tssr112695 12 8013042 to 8013049 7 + TSS region transcription start site region 112695
Tssr112696 12 8015037 to 8015050 13 + TSS region transcription start site region 112696
Tssr112697 12 8015320 to 8015334 14 + TSS region transcription start site region 112697
Tssr112698 12 8015367 to 8015386 19 + TSS region transcription start site region 112698
Tssr112699 12 8015468 to 8015496 28 + TSS region transcription start site region 112699
Tssr112700 12 8015500 to 8015513 13 + TSS region transcription start site region 112700
Tssr3783 12 8015647 to 8015656 9 + TSS region transcription start site region 3783
Tssr112701 12 8015691 to 8015703 12 + TSS region transcription start site region 112701
Tssr112702 12 8015814 to 8015826 12 + TSS region transcription start site region 112702
Tssr112703 12 8015955 to 8015970 15 + TSS region transcription start site region 112703
Tssr112704 12 8016805 to 8016811 6 + TSS region transcription start site region 112704
Gm33037 12 8042932 to 8208096 165164 - antisense lncRNA gene predicted gene, 33037
Cpgi4390 12 8207975 to 8208490 515 CpG island CpG island 4390
Ldah 12 8208107 to 8285759 77652 + protein coding gene lipid droplet associated hydrolase
Tssr112705 12 8208119 to 8208161 42 + TSS region transcription start site region 112705
Tssr112706 12 8208164 to 8208172 8 + TSS region transcription start site region 112706
Tssr112707 12 8216602 to 8216609 7 + TSS region transcription start site region 112707
Tssr112708 12 8216612 to 8216619 7 + TSS region transcription start site region 112708
Tssr112709 12 8216636 to 8216666 30 + TSS region transcription start site region 112709
Tssr112710 12 8216670 to 8216684 14 + TSS region transcription start site region 112710
Tssr112711 12 8220003 to 8220011 8 + TSS region transcription start site region 112711
Tssr112712 12 8220026 to 8220033 7 + TSS region transcription start site region 112712
Tssr112713 12 8287053 to 8287058 5 + TSS region transcription start site region 112713
Gm48898 12 8291024 to 8293694 2670 - lincRNA gene predicted gene, 48898
Cpgi4391 12 8297623 to 8299303 1680 CpG island CpG island 4391
Gdf7 12 8297918 to 8301954 4036 - protein coding gene growth differentiation factor 7
Cpgi4392 12 8299540 to 8299794 254 CpG island CpG island 4392
Cpgi4393 12 8301312 to 8302537 1225 CpG island CpG island 4393
Tssr115700 12 8301981 to 8301995 14 - TSS region transcription start site region 115700
Tssr115701 12 8302006 to 8302018 12 - TSS region transcription start site region 115701
Cpgi4394 12 8313150 to 8314069 919 CpG island CpG island 4394
Tssr112714 12 8313425 to 8313454 29 + TSS region transcription start site region 112714
Hs1bp3 12 8313433 to 8343824 30391 + protein coding gene HCLS1 binding protein 3
Tssr112715 12 8313455 to 8313462 7 + TSS region transcription start site region 112715
Tssr112716 12 8332201 to 8332214 13 + TSS region transcription start site region 112716
Tssr112717 12 8332218 to 8332228 10 + TSS region transcription start site region 112717
Gm48071 12 8335460 to 8336717 1257 - antisense lncRNA gene predicted gene, 48071
Tssr112718 12 8342932 to 8342955 23 + TSS region transcription start site region 112718
Tssr3784 12 8345144 to 8345154 10 + TSS region transcription start site region 3784
Tssr3785 12 8351365 to 8351375 10 - TSS region transcription start site region 3785
Tssr115702 12 8351381 to 8351403 22 - TSS region transcription start site region 115702
Tssr112719 12 8351540 to 8351545 5 + TSS region transcription start site region 112719
Tssr112720 12 8351571 to 8351576 5 + TSS region transcription start site region 112720
D12Mit183 12 8351876 to 8352145 269 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 183
Gm33134 12 8363712 to 8365800 2088 + lncRNA gene predicted gene, 33134
Tssr112721 12 8393284 to 8393287 3 + TSS region transcription start site region 112721
Gm48075 12 8394209 to 8400356 6147 + lincRNA gene predicted gene, 48075
Cpgi4395 12 8410971 to 8411281 310 CpG island CpG island 4395
Tssr112722 12 8433147 to 8433151 4 + TSS region transcription start site region 112722
Gm48076 12 8453504 to 8454918 1414 - unclassified gene predicted gene, 48076
D12Mit151 12 8467941 to 8468082 141 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 151
BC106175 12 8478874 to 8482157 3283 - unclassified gene cDNA sequence BC106175
Tssr115703 12 8480057 to 8480060 3 - TSS region transcription start site region 115703
Tssr115704 12 8480068 to 8480071 3 - TSS region transcription start site region 115704
Tssr115705 12 8480200 to 8480208 8 - TSS region transcription start site region 115705
Tssr115706 12 8480212 to 8480229 17 - TSS region transcription start site region 115706
Tssr115707 12 8480244 to 8480252 8 - TSS region transcription start site region 115707
Tssr3786 12 8480307 to 8480312 5 - TSS region transcription start site region 3786
Tssr3787 12 8480561 to 8480562 1 - TSS region transcription start site region 3787
Tssr115708 12 8482106 to 8482107 1 - TSS region transcription start site region 115708
Tssr115709 12 8482120 to 8482129 9 - TSS region transcription start site region 115709
Tssr115710 12 8482134 to 8482139 5 - TSS region transcription start site region 115710
Tssr115711 12 8482153 to 8482216 63 - TSS region transcription start site region 115711
Tssr115712 12 8496796 to 8496800 4 - TSS region transcription start site region 115712
Rhob 12 8497758 to 8499985 2227 - protein coding gene ras homolog family member B
Tssr115713 12 8498280 to 8498313 33 - TSS region transcription start site region 115713
Tssr115714 12 8498666 to 8498682 16 - TSS region transcription start site region 115714
Cpgi4396 12 8498744 to 8500488 1744 CpG island CpG island 4396
Tssr115715 12 8500001 to 8500017 16 - TSS region transcription start site region 115715
Tssr3788 12 8500184 to 8500216 32 + TSS region transcription start site region 3788
Tssr112723 12 8500253 to 8500278 25 + TSS region transcription start site region 112723
Tssr3789 12 8500325 to 8500332 7 + TSS region transcription start site region 3789
5033421B08Rik 12 8511201 to 8562681 51480 + antisense lncRNA gene RIKEN cDNA 5033421B08 gene
Tssr112724 12 8519696 to 8519733 37 + TSS region transcription start site region 112724
Tssr112725 12 8521929 to 8521939 10 + TSS region transcription start site region 112725
Slc7a15 12 8528483 to 8599066 70583 - protein coding gene solute carrier family 7 (cationic amino acid transporter, y+ system), member 15
Tssr115716 12 8539560 to 8539614 54 - TSS region transcription start site region 115716
Tssr112726 12 8572152 to 8572166 14 + TSS region transcription start site region 112726
Gm40267 12 8603640 to 8641352 37712 - lncRNA gene predicted gene, 40267
Tssr115717 12 8637026 to 8637039 13 - TSS region transcription start site region 115717
Tssr112727 12 8637264 to 8637303 39 + TSS region transcription start site region 112727
Tssr115718 12 8640670 to 8640682 12 - TSS region transcription start site region 115718
Cpgi4397 12 8640744 to 8641302 558 CpG island CpG island 4397
Tssr115719 12 8641008 to 8641039 31 - TSS region transcription start site region 115719
Cpgi4398 12 8673789 to 8675056 1267 CpG island CpG island 4398
Tssr115720 12 8674064 to 8674094 30 - TSS region transcription start site region 115720
Tssr112728 12 8674129 to 8674150 21 + TSS region transcription start site region 112728
Pum2 12 8674134 to 8752581 78447 + protein coding gene pumilio RNA-binding family member 2
Tssr112729 12 8674235 to 8674275 40 + TSS region transcription start site region 112729
Tssr112730 12 8674345 to 8674382 37 + TSS region transcription start site region 112730
Tssr112731 12 8674391 to 8674421 30 + TSS region transcription start site region 112731
Tssr112732 12 8674429 to 8674450 21 + TSS region transcription start site region 112732
Tssr115721 12 8674630 to 8674670 40 - TSS region transcription start site region 115721
Tssr112733 12 8674701 to 8674746 45 + TSS region transcription start site region 112733
Tssr115722 12 8674832 to 8674846 14 - TSS region transcription start site region 115722
Tssr112734 12 8700365 to 8700370 5 + TSS region transcription start site region 112734
Tssr112735 12 8712988 to 8712993 5 + TSS region transcription start site region 112735
Tssr112736 12 8739677 to 8739704 27 + TSS region transcription start site region 112736
Tssr112737 12 8750115 to 8750153 38 + TSS region transcription start site region 112737
Tssr115723 12 8762066 to 8762070 4 - TSS region transcription start site region 115723
Gm4755 12 8765788 to 8771253 5465 - bidirectional promoter lncRNA gene predicted gene 4755
Cpgi4399 12 8770893 to 8773183 2290 CpG island CpG island 4399
Tssr112738 12 8771040 to 8771062 22 + TSS region transcription start site region 112738
Tssr112739 12 8771317 to 8771328 11 + TSS region transcription start site region 112739
Tssr112740 12 8771345 to 8771361 16 + TSS region transcription start site region 112740
Tssr112741 12 8771378 to 8771394 16 + TSS region transcription start site region 112741
Sdc1 12 8771396 to 8793716 22320 + protein coding gene syndecan 1
Tssr112742 12 8771405 to 8771425 20 + TSS region transcription start site region 112742
Tssr3790 12 8771430 to 8771444 14 + TSS region transcription start site region 3790
Tssr112743 12 8771448 to 8771464 16 + TSS region transcription start site region 112743
Tssr112744 12 8774569 to 8774573 4 + TSS region transcription start site region 112744
D12Mit104.1 12 8785895 to 8786025 130 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 104.1
D12Mit104 12 8786045 to 8786191 146 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 104
D12Mit104.2 12 8786129 to 8786295 166 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 104.2
Tssr112745 12 8790700 to 8790740 40 + TSS region transcription start site region 112745
Tssr112746 12 8791786 to 8791831 45 + TSS region transcription start site region 112746
Tssr112747 12 8791887 to 8791936 49 + TSS region transcription start site region 112747
Tssr112748 12 8792178 to 8792192 14 + TSS region transcription start site region 112748
Tssr112749 12 8792427 to 8792446 19 + TSS region transcription start site region 112749
Tssr112750 12 8807803 to 8807808 5 + TSS region transcription start site region 112750
Gm33418 12 8830357 to 8831248 891 - lncRNA gene predicted gene, 33418
9930038B18Rik 12 8873187 to 8893473 20286 - lincRNA gene RIKEN cDNA 9930038B18 gene
Gm33483 12 8879430 to 8912909 33479 + lncRNA gene predicted gene, 33483
Gm47391 12 8912924 to 8917479 4555 + lincRNA gene predicted gene, 47391
Tssr115724 12 8916452 to 8916463 11 - TSS region transcription start site region 115724
Cpgi4400 12 8921398 to 8922580 1182 CpG island CpG island 4400
Tssr112751 12 8921598 to 8921671 73 + TSS region transcription start site region 112751
Laptm4a 12 8921664 to 8938742 17078 + protein coding gene lysosomal-associated protein transmembrane 4A
Tssr112752 12 8921687 to 8921704 17 + TSS region transcription start site region 112752