Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:79981487-80901518

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170 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D12Mit116 12 80000262 to 80000378 116 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 116
Gm36660 12 80018415 to 80081434 63019 - lincRNA gene predicted gene, 36660
Gm36834 12 80019564 to 80038604 19040 + lncRNA gene predicted gene, 36834
Gm47752 12 80091367 to 80101172 9805 + lincRNA gene predicted gene, 47752
Zfp36l1 12 80107760 to 80113013 5253 - protein coding gene zinc finger protein 36, C3H type-like 1
Gm26669 12 80108034 to 80113000 4966 + lincRNA gene predicted gene, 26669
Tssr116843 12 80108847 to 80108871 24 - TSS region transcription start site region 116843
Tssr116844 12 80109533 to 80109579 46 - TSS region transcription start site region 116844
Cpgi4806 12 80109696 to 80110559 863 CpG island CpG island 4806
Tssr116845 12 80109727 to 80109748 21 - TSS region transcription start site region 116845
Tssr116846 12 80109774 to 80109798 24 - TSS region transcription start site region 116846
Tssr114126 12 80109884 to 80109907 23 + TSS region transcription start site region 114126
Tssr116847 12 80109912 to 80109955 43 - TSS region transcription start site region 116847
Tssr116848 12 80110021 to 80110049 28 - TSS region transcription start site region 116848
Tssr116849 12 80110153 to 80110169 16 - TSS region transcription start site region 116849
Tssr116850 12 80110201 to 80110213 12 - TSS region transcription start site region 116850
Tssr116851 12 80110318 to 80110325 7 - TSS region transcription start site region 116851
Tssr116852 12 80110370 to 80110395 25 - TSS region transcription start site region 116852
Tssr116853 12 80110442 to 80110453 11 - TSS region transcription start site region 116853
Tssr116854 12 80110456 to 80110470 14 - TSS region transcription start site region 116854
Cpgi4807 12 80112189 to 80113028 839 CpG island CpG island 4807
Tssr116855 12 80113002 to 80113019 17 - TSS region transcription start site region 116855
Tssr116856 12 80113230 to 80113232 2 - TSS region transcription start site region 116856
Tssr114127 12 80113394 to 80113405 11 + TSS region transcription start site region 114127
Cpgi4808 12 80113782 to 80114772 990 CpG island CpG island 4808
Tssr116857 12 80114471 to 80114486 15 - TSS region transcription start site region 116857
Tssr116858 12 80114519 to 80114536 17 - TSS region transcription start site region 116858
Cpgi4809 12 80115033 to 80116327 1294 CpG island CpG island 4809
Tssr114128 12 80115131 to 80115178 47 + TSS region transcription start site region 114128
Tssr116859 12 80115203 to 80115225 22 - TSS region transcription start site region 116859
Tssr116860 12 80115294 to 80115307 13 - TSS region transcription start site region 116860
Tssr116861 12 80115480 to 80115494 14 - TSS region transcription start site region 116861
Tssr116862 12 80115695 to 80115711 16 - TSS region transcription start site region 116862
Tssr114129 12 80115849 to 80115936 87 + TSS region transcription start site region 114129
1300014J16Rik 12 80115863 to 80117199 1336 + lincRNA gene RIKEN cDNA 1300014J16 gene
Tssr116863 12 80116919 to 80116941 22 - TSS region transcription start site region 116863
2310015A10Rik 12 80120546 to 80132844 12298 - lncRNA gene RIKEN cDNA 2310015A10 gene
Tssr116864 12 80128459 to 80128466 7 - TSS region transcription start site region 116864
Tssr114130 12 80130891 to 80130909 18 + TSS region transcription start site region 114130
Cpgi4810 12 80132105 to 80133106 1001 CpG island CpG island 4810
Tssr116865 12 80132274 to 80132278 4 - TSS region transcription start site region 116865
Tssr116866 12 80132802 to 80132821 19 - TSS region transcription start site region 116866
Tssr116867 12 80135743 to 80135750 7 - TSS region transcription start site region 116867
Tssr116868 12 80139268 to 80139270 2 - TSS region transcription start site region 116868
Tssr116869 12 80139336 to 80139341 5 - TSS region transcription start site region 116869
Cpgi4811 12 80161768 to 80162010 242 CpG island CpG island 4811
Actn1 12 80167547 to 80260371 92824 - protein coding gene actinin, alpha 1
Tssr116870 12 80167818 to 80167837 19 - TSS region transcription start site region 116870
Tssr116871 12 80168159 to 80168179 20 - TSS region transcription start site region 116871
Cpgi4812 12 80168163 to 80168675 512 CpG island CpG island 4812
Tssr116872 12 80168183 to 80168197 14 - TSS region transcription start site region 116872
Tssr114131 12 80168288 to 80168331 43 + TSS region transcription start site region 114131
Tssr114132 12 80168938 to 80168977 39 + TSS region transcription start site region 114132
Tssr116873 12 80168939 to 80168969 30 - TSS region transcription start site region 116873
Tssr114133 12 80174453 to 80174480 27 + TSS region transcription start site region 114133
Tssr116874 12 80181972 to 80181977 5 - TSS region transcription start site region 116874
Gm47765 12 80190160 to 80191428 1268 - unclassified non-coding RNA gene predicted gene, 47765
Strm 12 80190582 to 80194442 3860 unclassified gene striamin
Gm47767 12 80209243 to 80211916 2673 + antisense lncRNA gene predicted gene, 47767
Tssr114134 12 80210188 to 80210197 9 + TSS region transcription start site region 114134
Tssr114135 12 80211141 to 80211148 7 + TSS region transcription start site region 114135
Tssr116875 12 80231472 to 80231498 26 - TSS region transcription start site region 116875
Cpgi4813 12 80258965 to 80261052 2087 CpG island CpG island 4813
Gm47766 12 80259443 to 80260557 1114 + antisense lncRNA gene predicted gene, 47766
Tssr116876 12 80260142 to 80260209 67 - TSS region transcription start site region 116876
Tssr116877 12 80260314 to 80260325 11 - TSS region transcription start site region 116877
Tssr116878 12 80260335 to 80260352 17 - TSS region transcription start site region 116878
Tssr116879 12 80260356 to 80260371 15 - TSS region transcription start site region 116879
Tssr116880 12 80260379 to 80260400 21 - TSS region transcription start site region 116880
Tssr116881 12 80260496 to 80260505 9 - TSS region transcription start site region 116881
Tssr116882 12 80260520 to 80260543 23 - TSS region transcription start site region 116882
Gm29952 12 80270725 to 80281934 11209 + lncRNA gene predicted gene, 29952
Tssr114136 12 80272064 to 80272107 43 + TSS region transcription start site region 114136
Tssr3878 12 80273409 to 80273420 11 + TSS region transcription start site region 3878
Dcaf5 12 80335848 to 80436601 100753 - protein coding gene DDB1 and CUL4 associated factor 5
Tssr3879 12 80367481 to 80367482 1 + TSS region transcription start site region 3879
Mir1843a 12 80391613 to 80391677 64 - miRNA gene microRNA 1843a
Scarna3b 12 80391614 to 80391737 123 - snoRNA gene small Cajal body-specific RNA 3B
Cpgi4814 12 80434719 to 80437122 2403 CpG island CpG island 4814
Tssr114137 12 80435083 to 80435146 63 + TSS region transcription start site region 114137
Tssr114138 12 80435171 to 80435235 64 + TSS region transcription start site region 114138
Gm30025 12 80435209 to 80435936 727 + antisense lncRNA gene predicted gene, 30025
Tssr116883 12 80436407 to 80436456 49 - TSS region transcription start site region 116883
Tssr116884 12 80436541 to 80436566 25 - TSS region transcription start site region 116884
Tssr116885 12 80436571 to 80436603 32 - TSS region transcription start site region 116885
Tssr116886 12 80436792 to 80436825 33 - TSS region transcription start site region 116886
Tssr116887 12 80441487 to 80441518 31 - TSS region transcription start site region 116887
Tssr116888 12 80441545 to 80441546 1 - TSS region transcription start site region 116888
Gm46363 12 80450478 to 80459126 8648 - lncRNA gene predicted gene, 46363
Gm30076 12 80459164 to 80463219 4055 - lncRNA gene predicted gene, 30076
Cpgi4815 12 80463087 to 80463730 643 CpG island CpG island 4815
Exd2 12 80463095 to 80498135 35040 + protein coding gene exonuclease 3'-5' domain containing 2
Tssr114139 12 80463165 to 80463179 14 + TSS region transcription start site region 114139
Tssr114140 12 80463182 to 80463200 18 + TSS region transcription start site region 114140
Tssr114141 12 80463204 to 80463257 53 + TSS region transcription start site region 114141
Tssr114142 12 80480229 to 80480244 15 + TSS region transcription start site region 114142
Tssr114143 12 80480274 to 80480284 10 + TSS region transcription start site region 114143
Tssr114144 12 80507204 to 80507207 3 + TSS region transcription start site region 114144
2310002D06Rik 12 80507206 to 80517954 10748 + lincRNA gene RIKEN cDNA 2310002D06 gene
Gm26777 12 80509945 to 80518151 8206 - bidirectional promoter lncRNA gene predicted gene, 26777
Cpgi4816 12 80518241 to 80520297 2056 CpG island CpG island 4816
Galnt16 12 80518277 to 80603896 85619 + protein coding gene polypeptide N-acetylgalactosaminyltransferase 16
Tssr114145 12 80518557 to 80518575 18 + TSS region transcription start site region 114145
Tssr114146 12 80519007 to 80519087 80 + TSS region transcription start site region 114146
Tssr114147 12 80519221 to 80519230 9 + TSS region transcription start site region 114147
4933406B15Rik 12 80583011 to 80597140 14129 - antisense lncRNA gene RIKEN cDNA 4933406B15 gene
D12Mit149 12 80588172 to 80588302 130 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 149
Tssr116889 12 80597124 to 80597139 15 - TSS region transcription start site region 116889
Gm46364 12 80613296 to 80613614 318 + pseudogene predicted gene, 46364
Gm23817 12 80622830 to 80622933 103 - snRNA gene predicted gene, 23817
Gm47852 12 80629294 to 80629558 264 - pseudogene predicted gene, 47852
Erh 12 80634023 to 80643871 9848 - protein coding gene ERH mRNA splicing and mitosis factor
Gm47879 12 80635992 to 80637371 1379 + antisense lncRNA gene predicted gene, 47879
Cpgi4817 12 80643262 to 80644813 1551 CpG island CpG island 4817
Tssr116890 12 80643799 to 80643857 58 - TSS region transcription start site region 116890
Tssr116891 12 80643858 to 80643869 11 - TSS region transcription start site region 116891
Slc39a9 12 80644163 to 80683342 39179 + protein coding gene solute carrier family 39 (zinc transporter), member 9
Tssr114148 12 80644212 to 80644265 53 + TSS region transcription start site region 114148
Tssr114149 12 80644470 to 80644496 26 + TSS region transcription start site region 114149
Tssr114150 12 80644502 to 80644525 23 + TSS region transcription start site region 114150
Gm47874 12 80648637 to 80649211 574 - pseudogene predicted gene, 47874
Plekhd1os 12 80686370 to 80692466 6096 - antisense lncRNA gene pleckstrin homology domain containing, family D (with coiled-coil domains) member 1, opposite strand
Cpgi4818 12 80692127 to 80693297 1170 CpG island CpG island 4818
Plekhd1 12 80692591 to 80724214 31623 + protein coding gene pleckstrin homology domain containing, family D (with coiled-coil domains) member 1
Tssr114151 12 80692643 to 80692717 74 + TSS region transcription start site region 114151
Cpgi4819 12 80721321 to 80721600 279 CpG island CpG island 4819
Tssr114152 12 80721696 to 80721719 23 + TSS region transcription start site region 114152
Tssr114153 12 80721727 to 80721757 30 + TSS region transcription start site region 114153
Ccdc177 12 80755447 to 80760715 5268 - protein coding gene coiled-coil domain containing 177
Cpgi4820 12 80756999 to 80759918 2919 CpG island CpG island 4820
Gm26796 12 80758406 to 80762793 4387 + antisense lncRNA gene predicted gene, 26796
Cpgi4821 12 80760192 to 80760612 420 CpG island CpG island 4821
Tssr116892 12 80760532 to 80760546 14 - TSS region transcription start site region 116892
Tssr116893 12 80760682 to 80760730 48 - TSS region transcription start site region 116893
Cpgi4822 12 80778245 to 80778419 174 CpG island CpG island 4822
Tssr116894 12 80780496 to 80780506 10 - TSS region transcription start site region 116894
Gm47941 12 80787944 to 80790343 2399 - bidirectional promoter lncRNA gene predicted gene, 47941
Cpgi4823 12 80790195 to 80791362 1167 CpG island CpG island 4823
Susd6 12 80790532 to 80880833 90301 + protein coding gene sushi domain containing 6
Tssr114154 12 80790547 to 80790574 27 + TSS region transcription start site region 114154
Tssr114155 12 80790584 to 80790595 11 + TSS region transcription start site region 114155
Tssr116895 12 80791179 to 80791196 17 - TSS region transcription start site region 116895
Tssr114156 12 80791431 to 80791443 12 + TSS region transcription start site region 114156
Tssr114157 12 80791459 to 80791466 7 + TSS region transcription start site region 114157
D12Mit288 12 80791635 to 80791756 121 DNA segment DNA Segment, Chr 12, Massachusetts Institute of Technology 288
Tssr116896 12 80792992 to 80793036 44 - TSS region transcription start site region 116896
Tssr114158 12 80793095 to 80793110 15 + TSS region transcription start site region 114158
Tssr114159 12 80793339 to 80793355 16 + TSS region transcription start site region 114159
Tssr114160 12 80800588 to 80800593 5 + TSS region transcription start site region 114160
Tssr3880 12 80816649 to 80816654 5 + TSS region transcription start site region 3880
Tssr114161 12 80816677 to 80816684 7 + TSS region transcription start site region 114161
Tssr114162 12 80816687 to 80816696 9 + TSS region transcription start site region 114162
Tssr114163 12 80816727 to 80816743 16 + TSS region transcription start site region 114163
Tssr114164 12 80819405 to 80819451 46 + TSS region transcription start site region 114164
Tssr114165 12 80827607 to 80827619 12 + TSS region transcription start site region 114165
Tssr114166 12 80827713 to 80827724 11 + TSS region transcription start site region 114166
Tssr114167 12 80833869 to 80833877 8 + TSS region transcription start site region 114167
Tssr114168 12 80847145 to 80847158 13 + TSS region transcription start site region 114168
Tssr114169 12 80854027 to 80854031 4 + TSS region transcription start site region 114169
Tssr114170 12 80854048 to 80854061 13 + TSS region transcription start site region 114170
Tssr114171 12 80854097 to 80854110 13 + TSS region transcription start site region 114171
Tssr114172 12 80859110 to 80859111 1 + TSS region transcription start site region 114172
5830400J07Rik 12 80864827 to 80866283 1456 unclassified gene RIKEN cDNA 5830400J07 gene
Tssr114173 12 80864931 to 80864940 9 + TSS region transcription start site region 114173
Tssr114174 12 80877377 to 80877399 22 + TSS region transcription start site region 114174
Tssr114175 12 80877469 to 80877490 21 + TSS region transcription start site region 114175
Tssr114176 12 80878316 to 80878330 14 + TSS region transcription start site region 114176
Tssr114177 12 80878477 to 80878488 11 + TSS region transcription start site region 114177
Gm26545 12 80885549 to 80887674 2125 - lincRNA gene predicted gene, 26545
Tssr114178 12 80885840 to 80885853 13 + TSS region transcription start site region 114178