Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:79508253-80218254

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102 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rad51b 12 79297282 to 79814690 517408 + protein coding gene RAD51 paralog B
Tssr114104 12 79532572 to 79532577 5 + TSS region transcription start site region 114104
Tssr114105 12 79547759 to 79547777 18 + TSS region transcription start site region 114105
Tssr114106 12 79559044 to 79559052 8 + TSS region transcription start site region 114106
Tssr114107 12 79559745 to 79559766 21 + TSS region transcription start site region 114107
Tssr114108 12 79570227 to 79570232 5 + TSS region transcription start site region 114108
Tssr114109 12 79575048 to 79575053 5 + TSS region transcription start site region 114109
Tssr3876 12 79611239 to 79611243 4 + TSS region transcription start site region 3876
Tssr116838 12 79642826 to 79642857 31 - TSS region transcription start site region 116838
Tssr114110 12 79643023 to 79643027 4 + TSS region transcription start site region 114110
Tssr114111 12 79645812 to 79645833 21 + TSS region transcription start site region 114111
Tssr116839 12 79646628 to 79646664 36 - TSS region transcription start site region 116839
Tssr116840 12 79663616 to 79663619 3 - TSS region transcription start site region 116840
Tssr114112 12 79663834 to 79663837 3 + TSS region transcription start site region 114112
Tssr116841 12 79692159 to 79692170 11 - TSS region transcription start site region 116841
Tssr114113 12 79722381 to 79722392 11 + TSS region transcription start site region 114113
Tssr114114 12 79750486 to 79750528 42 + TSS region transcription start site region 114114
Tssr3877 12 79758247 to 79758272 25 + TSS region transcription start site region 3877
Tssr114115 12 79762373 to 79762388 15 + TSS region transcription start site region 114115
Tssr114116 12 79766858 to 79766877 19 + TSS region transcription start site region 114116
Tssr114117 12 79766882 to 79766924 42 + TSS region transcription start site region 114117
Tssr114118 12 79770045 to 79770059 14 + TSS region transcription start site region 114118
Tssr114119 12 79770084 to 79770092 8 + TSS region transcription start site region 114119
Tssr114120 12 79770439 to 79770442 3 + TSS region transcription start site region 114120
Gm36048 12 79789415 to 79799978 10563 - lncRNA gene predicted gene, 36048
Gm3596 12 79831109 to 79832326 1217 - lncRNA gene predicted gene 3596
Gm36132 12 79859280 to 79867578 8298 - lncRNA gene predicted gene, 36132
Tssr114121 12 79863253 to 79863254 1 + TSS region transcription start site region 114121
Gm46361 12 79873522 to 79904582 31060 + lncRNA gene predicted gene, 46361
D12Mit143 12 79880275 to 79880421 146 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 143
Tssr116842 12 79891125 to 79891142 17 - TSS region transcription start site region 116842
Tssr114122 12 79891315 to 79891322 7 + TSS region transcription start site region 114122
Gm46362 12 79892653 to 79893700 1047 + lncRNA gene predicted gene, 46362
9430078K24Rik 12 79917019 to 79936264 19245 - lincRNA gene RIKEN cDNA 9430078K24 gene
Tssr114123 12 79917547 to 79917558 11 + TSS region transcription start site region 114123
4933435C09Rik 12 79937479 to 79949491 12012 + lncRNA gene RIKEN cDNA 4933435C09 gene
Gm5654 12 79939165 to 79939639 474 - pseudogene predicted gene 5654
Tssr114124 12 79963739 to 79963743 4 + TSS region transcription start site region 114124
Cpgi4805 12 79965380 to 79965829 449 CpG island CpG island 4805
Tssr114125 12 79969605 to 79969655 50 + TSS region transcription start site region 114125
Gm8275 12 79979428 to 79979851 423 - pseudogene predicted gene 8275
D12Mit116 12 80000262 to 80000378 116 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 116
Gm36660 12 80018415 to 80081434 63019 - lincRNA gene predicted gene, 36660
Gm36834 12 80019564 to 80038604 19040 + lncRNA gene predicted gene, 36834
Gm47752 12 80091367 to 80101172 9805 + lincRNA gene predicted gene, 47752
Zfp36l1 12 80107760 to 80113013 5253 - protein coding gene zinc finger protein 36, C3H type-like 1
Gm26669 12 80108034 to 80113000 4966 + lincRNA gene predicted gene, 26669
Tssr116843 12 80108847 to 80108871 24 - TSS region transcription start site region 116843
Tssr116844 12 80109533 to 80109579 46 - TSS region transcription start site region 116844
Cpgi4806 12 80109696 to 80110559 863 CpG island CpG island 4806
Tssr116845 12 80109727 to 80109748 21 - TSS region transcription start site region 116845
Tssr116846 12 80109774 to 80109798 24 - TSS region transcription start site region 116846
Tssr114126 12 80109884 to 80109907 23 + TSS region transcription start site region 114126
Tssr116847 12 80109912 to 80109955 43 - TSS region transcription start site region 116847
Tssr116848 12 80110021 to 80110049 28 - TSS region transcription start site region 116848
Tssr116849 12 80110153 to 80110169 16 - TSS region transcription start site region 116849
Tssr116850 12 80110201 to 80110213 12 - TSS region transcription start site region 116850
Tssr116851 12 80110318 to 80110325 7 - TSS region transcription start site region 116851
Tssr116852 12 80110370 to 80110395 25 - TSS region transcription start site region 116852
Tssr116853 12 80110442 to 80110453 11 - TSS region transcription start site region 116853
Tssr116854 12 80110456 to 80110470 14 - TSS region transcription start site region 116854
Cpgi4807 12 80112189 to 80113028 839 CpG island CpG island 4807
Tssr116855 12 80113002 to 80113019 17 - TSS region transcription start site region 116855
Tssr116856 12 80113230 to 80113232 2 - TSS region transcription start site region 116856
Tssr114127 12 80113394 to 80113405 11 + TSS region transcription start site region 114127
Cpgi4808 12 80113782 to 80114772 990 CpG island CpG island 4808
Tssr116857 12 80114471 to 80114486 15 - TSS region transcription start site region 116857
Tssr116858 12 80114519 to 80114536 17 - TSS region transcription start site region 116858
Cpgi4809 12 80115033 to 80116327 1294 CpG island CpG island 4809
Tssr114128 12 80115131 to 80115178 47 + TSS region transcription start site region 114128
Tssr116859 12 80115203 to 80115225 22 - TSS region transcription start site region 116859
Tssr116860 12 80115294 to 80115307 13 - TSS region transcription start site region 116860
Tssr116861 12 80115480 to 80115494 14 - TSS region transcription start site region 116861
Tssr116862 12 80115695 to 80115711 16 - TSS region transcription start site region 116862
Tssr114129 12 80115849 to 80115936 87 + TSS region transcription start site region 114129
1300014J16Rik 12 80115863 to 80117199 1336 + lincRNA gene RIKEN cDNA 1300014J16 gene
Tssr116863 12 80116919 to 80116941 22 - TSS region transcription start site region 116863
2310015A10Rik 12 80120546 to 80132844 12298 - lncRNA gene RIKEN cDNA 2310015A10 gene
Tssr116864 12 80128459 to 80128466 7 - TSS region transcription start site region 116864
Tssr114130 12 80130891 to 80130909 18 + TSS region transcription start site region 114130
Cpgi4810 12 80132105 to 80133106 1001 CpG island CpG island 4810
Tssr116865 12 80132274 to 80132278 4 - TSS region transcription start site region 116865
Tssr116866 12 80132802 to 80132821 19 - TSS region transcription start site region 116866
Tssr116867 12 80135743 to 80135750 7 - TSS region transcription start site region 116867
Tssr116868 12 80139268 to 80139270 2 - TSS region transcription start site region 116868
Tssr116869 12 80139336 to 80139341 5 - TSS region transcription start site region 116869
Cpgi4811 12 80161768 to 80162010 242 CpG island CpG island 4811
Actn1 12 80167547 to 80260371 92824 - protein coding gene actinin, alpha 1
Tssr116870 12 80167818 to 80167837 19 - TSS region transcription start site region 116870
Tssr116871 12 80168159 to 80168179 20 - TSS region transcription start site region 116871
Cpgi4812 12 80168163 to 80168675 512 CpG island CpG island 4812
Tssr116872 12 80168183 to 80168197 14 - TSS region transcription start site region 116872
Tssr114131 12 80168288 to 80168331 43 + TSS region transcription start site region 114131
Tssr114132 12 80168938 to 80168977 39 + TSS region transcription start site region 114132
Tssr116873 12 80168939 to 80168969 30 - TSS region transcription start site region 116873
Tssr114133 12 80174453 to 80174480 27 + TSS region transcription start site region 114133
Tssr116874 12 80181972 to 80181977 5 - TSS region transcription start site region 116874
Gm47765 12 80190160 to 80191428 1268 - unclassified non-coding RNA gene predicted gene, 47765
Strm 12 80190582 to 80194442 3860 unclassified gene striamin
Gm47767 12 80209243 to 80211916 2673 + antisense lncRNA gene predicted gene, 47767
Tssr114134 12 80210188 to 80210197 9 + TSS region transcription start site region 114134
Tssr114135 12 80211141 to 80211148 7 + TSS region transcription start site region 114135