Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:79177547-81250371

Filter by:
307 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lmblgq5 12 17546446 to 80910109 63363663 QTL limb length QTL 5
Rdh11 12 79175551 to 79191819 16268 - protein coding gene retinol dehydrogenase 11
Tssr116827 12 79185708 to 79185735 27 - TSS region transcription start site region 116827
Tssr116828 12 79190955 to 79190976 21 - TSS region transcription start site region 116828
Tssr116829 12 79191812 to 79191832 20 - TSS region transcription start site region 116829
Tssr116830 12 79191839 to 79191861 22 - TSS region transcription start site region 116830
Tssr116831 12 79191875 to 79191889 14 - TSS region transcription start site region 116831
Tssr116832 12 79192201 to 79192210 9 - TSS region transcription start site region 116832
Tssr116833 12 79192213 to 79192242 29 - TSS region transcription start site region 116833
Tssr116834 12 79192248 to 79192284 36 - TSS region transcription start site region 116834
Tssr114088 12 79208883 to 79208888 5 + TSS region transcription start site region 114088
Tssr114089 12 79208904 to 79208923 19 + TSS region transcription start site region 114089
Rdh12 12 79208913 to 79222664 13751 + protein coding gene retinol dehydrogenase 12
Tssr114090 12 79208928 to 79208939 11 + TSS region transcription start site region 114090
Tssr114091 12 79209278 to 79209294 16 + TSS region transcription start site region 114091
Zfyve26 12 79232346 to 79296304 63958 - protein coding gene zinc finger, FYVE domain containing 26
Tssr116835 12 79249758 to 79249769 11 - TSS region transcription start site region 116835
Tssr3874 12 79253287 to 79253297 10 - TSS region transcription start site region 3874
Tssr114092 12 79255298 to 79255326 28 + TSS region transcription start site region 114092
Bw20 12 79261478 to 79261478 0 QTL body weight QTL 20
Cpgi4803 12 79296124 to 79296607 483 CpG island CpG island 4803
Tssr116836 12 79296266 to 79296310 44 - TSS region transcription start site region 116836
Tssr114093 12 79296437 to 79296450 13 + TSS region transcription start site region 114093
Rad51b 12 79297282 to 79814690 517408 + protein coding gene RAD51 paralog B
Tssr114094 12 79297311 to 79297327 16 + TSS region transcription start site region 114094
Tssr114095 12 79297345 to 79297377 32 + TSS region transcription start site region 114095
Cpgi4804 12 79297398 to 79297600 202 CpG island CpG island 4804
Tssr114096 12 79303316 to 79303339 23 + TSS region transcription start site region 114096
Tssr114097 12 79327099 to 79327131 32 + TSS region transcription start site region 114097
Tssr114098 12 79327239 to 79327250 11 + TSS region transcription start site region 114098
Tssr114099 12 79335388 to 79335434 46 + TSS region transcription start site region 114099
Tssr114100 12 79383810 to 79383831 21 + TSS region transcription start site region 114100
Tssr114101 12 79386144 to 79386147 3 + TSS region transcription start site region 114101
Tssr3875 12 79390374 to 79390378 4 + TSS region transcription start site region 3875
D12Dcr7 12 79421507 to 79421609 102 DNA segment DNA Segment, Chr 12, Derry C. Roopenian 7
D12Ertd123e 12 79435701 to 79435916 215 DNA segment DNA segment, Chr 12, ERATO Doi 123, expressed
D12Mit156 12 79456953 to 79457150 197 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 156
Tssr114102 12 79482001 to 79482004 3 + TSS region transcription start site region 114102
Tssr114103 12 79490143 to 79490154 11 + TSS region transcription start site region 114103
2310061D13Rik 12 79493257 to 79493636 379 unclassified gene RIKEN cDNA 2310061D13 gene
Tssr116837 12 79493633 to 79493638 5 - TSS region transcription start site region 116837
Tssr114104 12 79532572 to 79532577 5 + TSS region transcription start site region 114104
Tssr114105 12 79547759 to 79547777 18 + TSS region transcription start site region 114105
Tssr114106 12 79559044 to 79559052 8 + TSS region transcription start site region 114106
Tssr114107 12 79559745 to 79559766 21 + TSS region transcription start site region 114107
Tssr114108 12 79570227 to 79570232 5 + TSS region transcription start site region 114108
Tssr114109 12 79575048 to 79575053 5 + TSS region transcription start site region 114109
Tssr3876 12 79611239 to 79611243 4 + TSS region transcription start site region 3876
Tssr116838 12 79642826 to 79642857 31 - TSS region transcription start site region 116838
Tssr114110 12 79643023 to 79643027 4 + TSS region transcription start site region 114110
Tssr114111 12 79645812 to 79645833 21 + TSS region transcription start site region 114111
Tssr116839 12 79646628 to 79646664 36 - TSS region transcription start site region 116839
Tssr116840 12 79663616 to 79663619 3 - TSS region transcription start site region 116840
Tssr114112 12 79663834 to 79663837 3 + TSS region transcription start site region 114112
Tssr116841 12 79692159 to 79692170 11 - TSS region transcription start site region 116841
Tssr114113 12 79722381 to 79722392 11 + TSS region transcription start site region 114113
Tssr114114 12 79750486 to 79750528 42 + TSS region transcription start site region 114114
Tssr3877 12 79758247 to 79758272 25 + TSS region transcription start site region 3877
Tssr114115 12 79762373 to 79762388 15 + TSS region transcription start site region 114115
Tssr114116 12 79766858 to 79766877 19 + TSS region transcription start site region 114116
Tssr114117 12 79766882 to 79766924 42 + TSS region transcription start site region 114117
Tssr114118 12 79770045 to 79770059 14 + TSS region transcription start site region 114118
Tssr114119 12 79770084 to 79770092 8 + TSS region transcription start site region 114119
Tssr114120 12 79770439 to 79770442 3 + TSS region transcription start site region 114120
Gm36048 12 79789415 to 79799978 10563 - lncRNA gene predicted gene, 36048
Gm3596 12 79831109 to 79832326 1217 - lncRNA gene predicted gene 3596
Gm36132 12 79859280 to 79867578 8298 - lncRNA gene predicted gene, 36132
Tssr114121 12 79863253 to 79863254 1 + TSS region transcription start site region 114121
Gm46361 12 79873522 to 79904582 31060 + lncRNA gene predicted gene, 46361
D12Mit143 12 79880275 to 79880421 146 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 143
Tssr116842 12 79891125 to 79891142 17 - TSS region transcription start site region 116842
Tssr114122 12 79891315 to 79891322 7 + TSS region transcription start site region 114122
Gm46362 12 79892653 to 79893700 1047 + lncRNA gene predicted gene, 46362
9430078K24Rik 12 79917019 to 79936264 19245 - lincRNA gene RIKEN cDNA 9430078K24 gene
Tssr114123 12 79917547 to 79917558 11 + TSS region transcription start site region 114123
4933435C09Rik 12 79937479 to 79949491 12012 + lncRNA gene RIKEN cDNA 4933435C09 gene
Gm5654 12 79939165 to 79939639 474 - pseudogene predicted gene 5654
Tssr114124 12 79963739 to 79963743 4 + TSS region transcription start site region 114124
Cpgi4805 12 79965380 to 79965829 449 CpG island CpG island 4805
Tssr114125 12 79969605 to 79969655 50 + TSS region transcription start site region 114125
Gm8275 12 79979428 to 79979851 423 - pseudogene predicted gene 8275
D12Mit116 12 80000262 to 80000378 116 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 116
Gm36660 12 80018415 to 80081434 63019 - lincRNA gene predicted gene, 36660
Gm36834 12 80019564 to 80038604 19040 + lncRNA gene predicted gene, 36834
Gm47752 12 80091367 to 80101172 9805 + lincRNA gene predicted gene, 47752
Zfp36l1 12 80107760 to 80113013 5253 - protein coding gene zinc finger protein 36, C3H type-like 1
Gm26669 12 80108034 to 80113000 4966 + lincRNA gene predicted gene, 26669
Tssr116843 12 80108847 to 80108871 24 - TSS region transcription start site region 116843
Tssr116844 12 80109533 to 80109579 46 - TSS region transcription start site region 116844
Cpgi4806 12 80109696 to 80110559 863 CpG island CpG island 4806
Tssr116845 12 80109727 to 80109748 21 - TSS region transcription start site region 116845
Tssr116846 12 80109774 to 80109798 24 - TSS region transcription start site region 116846
Tssr114126 12 80109884 to 80109907 23 + TSS region transcription start site region 114126
Tssr116847 12 80109912 to 80109955 43 - TSS region transcription start site region 116847
Tssr116848 12 80110021 to 80110049 28 - TSS region transcription start site region 116848
Tssr116849 12 80110153 to 80110169 16 - TSS region transcription start site region 116849
Tssr116850 12 80110201 to 80110213 12 - TSS region transcription start site region 116850
Tssr116851 12 80110318 to 80110325 7 - TSS region transcription start site region 116851
Tssr116852 12 80110370 to 80110395 25 - TSS region transcription start site region 116852
Tssr116853 12 80110442 to 80110453 11 - TSS region transcription start site region 116853
Tssr116854 12 80110456 to 80110470 14 - TSS region transcription start site region 116854
Cpgi4807 12 80112189 to 80113028 839 CpG island CpG island 4807
Tssr116855 12 80113002 to 80113019 17 - TSS region transcription start site region 116855
Tssr116856 12 80113230 to 80113232 2 - TSS region transcription start site region 116856
Tssr114127 12 80113394 to 80113405 11 + TSS region transcription start site region 114127
Cpgi4808 12 80113782 to 80114772 990 CpG island CpG island 4808
Tssr116857 12 80114471 to 80114486 15 - TSS region transcription start site region 116857
Tssr116858 12 80114519 to 80114536 17 - TSS region transcription start site region 116858
Cpgi4809 12 80115033 to 80116327 1294 CpG island CpG island 4809
Tssr114128 12 80115131 to 80115178 47 + TSS region transcription start site region 114128
Tssr116859 12 80115203 to 80115225 22 - TSS region transcription start site region 116859
Tssr116860 12 80115294 to 80115307 13 - TSS region transcription start site region 116860
Tssr116861 12 80115480 to 80115494 14 - TSS region transcription start site region 116861
Tssr116862 12 80115695 to 80115711 16 - TSS region transcription start site region 116862
Tssr114129 12 80115849 to 80115936 87 + TSS region transcription start site region 114129
1300014J16Rik 12 80115863 to 80117199 1336 + lincRNA gene RIKEN cDNA 1300014J16 gene
Tssr116863 12 80116919 to 80116941 22 - TSS region transcription start site region 116863
2310015A10Rik 12 80120546 to 80132844 12298 - lncRNA gene RIKEN cDNA 2310015A10 gene
Tssr116864 12 80128459 to 80128466 7 - TSS region transcription start site region 116864
Tssr114130 12 80130891 to 80130909 18 + TSS region transcription start site region 114130
Cpgi4810 12 80132105 to 80133106 1001 CpG island CpG island 4810
Tssr116865 12 80132274 to 80132278 4 - TSS region transcription start site region 116865
Tssr116866 12 80132802 to 80132821 19 - TSS region transcription start site region 116866
Tssr116867 12 80135743 to 80135750 7 - TSS region transcription start site region 116867
Tssr116868 12 80139268 to 80139270 2 - TSS region transcription start site region 116868
Tssr116869 12 80139336 to 80139341 5 - TSS region transcription start site region 116869
Cpgi4811 12 80161768 to 80162010 242 CpG island CpG island 4811
Actn1 12 80167547 to 80260371 92824 - protein coding gene actinin, alpha 1
Tssr116870 12 80167818 to 80167837 19 - TSS region transcription start site region 116870
Tssr116871 12 80168159 to 80168179 20 - TSS region transcription start site region 116871
Cpgi4812 12 80168163 to 80168675 512 CpG island CpG island 4812
Tssr116872 12 80168183 to 80168197 14 - TSS region transcription start site region 116872
Tssr114131 12 80168288 to 80168331 43 + TSS region transcription start site region 114131
Tssr114132 12 80168938 to 80168977 39 + TSS region transcription start site region 114132
Tssr116873 12 80168939 to 80168969 30 - TSS region transcription start site region 116873
Tssr114133 12 80174453 to 80174480 27 + TSS region transcription start site region 114133
Tssr116874 12 80181972 to 80181977 5 - TSS region transcription start site region 116874
Gm47765 12 80190160 to 80191428 1268 - unclassified non-coding RNA gene predicted gene, 47765
Strm 12 80190582 to 80194442 3860 unclassified gene striamin
Gm47767 12 80209243 to 80211916 2673 + antisense lncRNA gene predicted gene, 47767
Tssr114134 12 80210188 to 80210197 9 + TSS region transcription start site region 114134
Tssr114135 12 80211141 to 80211148 7 + TSS region transcription start site region 114135
Tssr116875 12 80231472 to 80231498 26 - TSS region transcription start site region 116875
Cpgi4813 12 80258965 to 80261052 2087 CpG island CpG island 4813
Gm47766 12 80259443 to 80260557 1114 + antisense lncRNA gene predicted gene, 47766
Tssr116876 12 80260142 to 80260209 67 - TSS region transcription start site region 116876
Tssr116877 12 80260314 to 80260325 11 - TSS region transcription start site region 116877
Tssr116878 12 80260335 to 80260352 17 - TSS region transcription start site region 116878
Tssr116879 12 80260356 to 80260371 15 - TSS region transcription start site region 116879
Tssr116880 12 80260379 to 80260400 21 - TSS region transcription start site region 116880
Tssr116881 12 80260496 to 80260505 9 - TSS region transcription start site region 116881
Tssr116882 12 80260520 to 80260543 23 - TSS region transcription start site region 116882
Gm29952 12 80270725 to 80281934 11209 + lncRNA gene predicted gene, 29952
Tssr114136 12 80272064 to 80272107 43 + TSS region transcription start site region 114136
Tssr3878 12 80273409 to 80273420 11 + TSS region transcription start site region 3878
Dcaf5 12 80335848 to 80436601 100753 - protein coding gene DDB1 and CUL4 associated factor 5
Tssr3879 12 80367481 to 80367482 1 + TSS region transcription start site region 3879
Mir1843a 12 80391613 to 80391677 64 - miRNA gene microRNA 1843a
Scarna3b 12 80391614 to 80391737 123 - snoRNA gene small Cajal body-specific RNA 3B
Cpgi4814 12 80434719 to 80437122 2403 CpG island CpG island 4814
Tssr114137 12 80435083 to 80435146 63 + TSS region transcription start site region 114137
Tssr114138 12 80435171 to 80435235 64 + TSS region transcription start site region 114138
Gm30025 12 80435209 to 80435936 727 + antisense lncRNA gene predicted gene, 30025
Tssr116883 12 80436407 to 80436456 49 - TSS region transcription start site region 116883
Tssr116884 12 80436541 to 80436566 25 - TSS region transcription start site region 116884
Tssr116885 12 80436571 to 80436603 32 - TSS region transcription start site region 116885
Tssr116886 12 80436792 to 80436825 33 - TSS region transcription start site region 116886
Tssr116887 12 80441487 to 80441518 31 - TSS region transcription start site region 116887
Tssr116888 12 80441545 to 80441546 1 - TSS region transcription start site region 116888
Gm46363 12 80450478 to 80459126 8648 - lncRNA gene predicted gene, 46363
Gm30076 12 80459164 to 80463219 4055 - lncRNA gene predicted gene, 30076
Cpgi4815 12 80463087 to 80463730 643 CpG island CpG island 4815
Exd2 12 80463095 to 80498135 35040 + protein coding gene exonuclease 3'-5' domain containing 2
Tssr114139 12 80463165 to 80463179 14 + TSS region transcription start site region 114139
Tssr114140 12 80463182 to 80463200 18 + TSS region transcription start site region 114140
Tssr114141 12 80463204 to 80463257 53 + TSS region transcription start site region 114141
Tssr114142 12 80480229 to 80480244 15 + TSS region transcription start site region 114142
Tssr114143 12 80480274 to 80480284 10 + TSS region transcription start site region 114143
Tssr114144 12 80507204 to 80507207 3 + TSS region transcription start site region 114144
2310002D06Rik 12 80507206 to 80517954 10748 + lincRNA gene RIKEN cDNA 2310002D06 gene
Gm26777 12 80509945 to 80518151 8206 - bidirectional promoter lncRNA gene predicted gene, 26777
Cpgi4816 12 80518241 to 80520297 2056 CpG island CpG island 4816
Galnt16 12 80518277 to 80603896 85619 + protein coding gene polypeptide N-acetylgalactosaminyltransferase 16
Tssr114145 12 80518557 to 80518575 18 + TSS region transcription start site region 114145
Tssr114146 12 80519007 to 80519087 80 + TSS region transcription start site region 114146
Tssr114147 12 80519221 to 80519230 9 + TSS region transcription start site region 114147
4933406B15Rik 12 80583011 to 80597140 14129 - antisense lncRNA gene RIKEN cDNA 4933406B15 gene
D12Mit149 12 80588172 to 80588302 130 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 149
Tssr116889 12 80597124 to 80597139 15 - TSS region transcription start site region 116889
Gm46364 12 80613296 to 80613614 318 + pseudogene predicted gene, 46364
Gm23817 12 80622830 to 80622933 103 - snRNA gene predicted gene, 23817
Gm47852 12 80629294 to 80629558 264 - pseudogene predicted gene, 47852
Erh 12 80634023 to 80643871 9848 - protein coding gene ERH mRNA splicing and mitosis factor
Gm47879 12 80635992 to 80637371 1379 + antisense lncRNA gene predicted gene, 47879
Cpgi4817 12 80643262 to 80644813 1551 CpG island CpG island 4817
Tssr116890 12 80643799 to 80643857 58 - TSS region transcription start site region 116890
Tssr116891 12 80643858 to 80643869 11 - TSS region transcription start site region 116891
Slc39a9 12 80644163 to 80683342 39179 + protein coding gene solute carrier family 39 (zinc transporter), member 9
Tssr114148 12 80644212 to 80644265 53 + TSS region transcription start site region 114148
Tssr114149 12 80644470 to 80644496 26 + TSS region transcription start site region 114149