Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:78929163-79181655

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cplaq10 12 15291025 to 78993590 63702565 QTL circadian period of locomotor activity 10
Gm46359 12 78910285 to 78946524 36239 + lncRNA gene predicted gene, 46359
Gm46360 12 78928859 to 78940474 11615 + lncRNA gene predicted gene, 46360
E130002L11Rik 12 78956931 to 78960214 3283 unclassified gene RIKEN cDNA E130002L11 gene
Tmem229b 12 78961795 to 79007627 45832 - protein coding gene transmembrane protein 229B
Tssr3871 12 78980523 to 78980524 1 - TSS region transcription start site region 3871
Tssr3872 12 78980536 to 78980538 2 - TSS region transcription start site region 3872
Tssr116801 12 78980569 to 78980587 18 - TSS region transcription start site region 116801
Tssr116802 12 78980590 to 78980600 10 - TSS region transcription start site region 116802
Tssr116803 12 78980601 to 78980624 23 - TSS region transcription start site region 116803
Tssr116804 12 78980673 to 78980680 7 - TSS region transcription start site region 116804
Tssr116805 12 78980712 to 78980719 7 - TSS region transcription start site region 116805
Tssr116806 12 78980743 to 78980754 11 - TSS region transcription start site region 116806
Tssr116807 12 78980758 to 78980817 59 - TSS region transcription start site region 116807
Tssr116808 12 78983471 to 78983472 1 - TSS region transcription start site region 116808
Tssr116809 12 78983476 to 78983493 17 - TSS region transcription start site region 116809
Tssr116810 12 78989183 to 78989187 4 - TSS region transcription start site region 116810
D12Mit4 12 78993390 to 78993590 200 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 4
Pbwg12 12 78993390 to 78993590 200 QTL postnatal body weight growth 12
Fbgl1 12 78993390 to 83115437 4122047 QTL fasting blood glucose 1
Cpgi4798 12 79006417 to 79007584 1167 CpG island CpG island 4798
Tssr116811 12 79007276 to 79007346 70 - TSS region transcription start site region 116811
Tssr116812 12 79007347 to 79007358 11 - TSS region transcription start site region 116812
Tssr116813 12 79017341 to 79017352 11 - TSS region transcription start site region 116813
Tssr116814 12 79017360 to 79017390 30 - TSS region transcription start site region 116814
Cpgi4799 12 79028694 to 79029964 1270 CpG island CpG island 4799
Tssr114073 12 79029150 to 79029193 43 + TSS region transcription start site region 114073
Plekhh1 12 79029163 to 79081655 52492 + protein coding gene pleckstrin homology domain containing, family H (with MyTH4 domain) member 1
Tssr114074 12 79029196 to 79029218 22 + TSS region transcription start site region 114074
Gm35844 12 79029749 to 79040484 10735 - lncRNA gene predicted gene, 35844
Tssr114075 12 79040460 to 79040497 37 + TSS region transcription start site region 114075
Tssr116815 12 79068442 to 79068460 18 - TSS region transcription start site region 116815
Tssr114076 12 79069809 to 79069813 4 + TSS region transcription start site region 114076
Pigh 12 79080664 to 79089651 8987 - protein coding gene phosphatidylinositol glycan anchor biosynthesis, class H
9230116L04Rik 12 79088705 to 79103939 15234 - lincRNA gene RIKEN cDNA 9230116L04 gene
Cpgi4800 12 79089068 to 79089819 751 CpG island CpG island 4800
Tssr116816 12 79089623 to 79089660 37 - TSS region transcription start site region 116816
Tssr116817 12 79089661 to 79089687 26 - TSS region transcription start site region 116817
Tssr116818 12 79089698 to 79089719 21 - TSS region transcription start site region 116818
Tssr116819 12 79103913 to 79103950 37 - TSS region transcription start site region 116819
Gm27297 12 79107958 to 79108062 104 - snRNA gene predicted gene, 27297
Gm8255 12 79113720 to 79114024 304 + pseudogene predicted gene 8255
Cpgi4801 12 79130363 to 79131512 1149 CpG island CpG island 4801
Tssr3873 12 79130749 to 79130789 40 + TSS region transcription start site region 3873
Arg2 12 79130788 to 79156301 25513 + protein coding gene arginase type II
Tssr114077 12 79130800 to 79130816 16 + TSS region transcription start site region 114077
Tssr116820 12 79132168 to 79132183 15 - TSS region transcription start site region 116820
Tssr116821 12 79132193 to 79132215 22 - TSS region transcription start site region 116821
Tssr114078 12 79132364 to 79132367 3 + TSS region transcription start site region 114078
Tssr116822 12 79134536 to 79134537 1 - TSS region transcription start site region 116822
Tssr114079 12 79135653 to 79135657 4 + TSS region transcription start site region 114079
Tssr114080 12 79135979 to 79136007 28 + TSS region transcription start site region 114080
Tssr114081 12 79138324 to 79138360 36 + TSS region transcription start site region 114081
Tssr114082 12 79140001 to 79140028 27 + TSS region transcription start site region 114082
Gm40462 12 79140130 to 79147593 7463 - lncRNA gene predicted gene, 40462
Tssr114083 12 79141114 to 79141136 22 + TSS region transcription start site region 114083
Tssr114084 12 79145847 to 79145857 10 + TSS region transcription start site region 114084
Tssr114085 12 79149944 to 79149984 40 + TSS region transcription start site region 114085
Gm48780 12 79150936 to 79151932 996 - antisense lncRNA gene predicted gene, 48780
Tssr114086 12 79152005 to 79152025 20 + TSS region transcription start site region 114086
Vti1b 12 79156017 to 79172642 16625 - protein coding gene vesicle transport through interaction with t-SNAREs 1B
Gm17195 12 79163408 to 79163835 427 - pseudogene predicted gene 17195
Tssr116823 12 79165046 to 79165057 11 - TSS region transcription start site region 116823
Tssr114087 12 79168462 to 79168463 1 + TSS region transcription start site region 114087
Gm17194 12 79168486 to 79168833 347 + pseudogene predicted gene 17194
Cpgi4802 12 79172011 to 79173031 1020 CpG island CpG island 4802
Tssr116824 12 79172412 to 79172473 61 - TSS region transcription start site region 116824
Tssr116825 12 79172609 to 79172672 63 - TSS region transcription start site region 116825
Rdh11 12 79175551 to 79191819 16268 - protein coding gene retinol dehydrogenase 11
Tssr116826 12 79175880 to 79175898 18 - TSS region transcription start site region 116826