Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:78478691-79316964

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137 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cplaq10 12 15291025 to 78993590 63702565 QTL circadian period of locomotor activity 10
Gphn 12 78226379 to 78684772 458393 + protein coding gene gephyrin
Tssr114054 12 78481317 to 78481323 6 + TSS region transcription start site region 114054
Tssr114055 12 78486862 to 78486868 6 + TSS region transcription start site region 114055
A230092J17Rik 12 78495906 to 78497622 1716 unclassified gene RIKEN cDNA A230092J17 gene
Tssr114056 12 78691495 to 78691512 17 + TSS region transcription start site region 114056
Tssr114057 12 78691516 to 78691540 24 + TSS region transcription start site region 114057
Fam71d 12 78691535 to 78734516 42981 + protein coding gene family with sequence similarity 71, member D
Tssr114058 12 78691651 to 78691690 39 + TSS region transcription start site region 114058
Tssr114059 12 78723540 to 78723543 3 + TSS region transcription start site region 114059
Cpgi4794 12 78748317 to 78749717 1400 CpG island CpG island 4794
Tssr114060 12 78748865 to 78748920 55 + TSS region transcription start site region 114060
Mpp5 12 78748910 to 78840714 91804 + protein coding gene membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)
Tssr114061 12 78748955 to 78748971 16 + TSS region transcription start site region 114061
Tssr114062 12 78748996 to 78749019 23 + TSS region transcription start site region 114062
Tssr114063 12 78749027 to 78749041 14 + TSS region transcription start site region 114063
Tssr116791 12 78749589 to 78749600 11 - TSS region transcription start site region 116791
Gm25225 12 78752687 to 78752788 101 - snRNA gene predicted gene, 25225
Tssr114064 12 78802888 to 78802911 23 + TSS region transcription start site region 114064
Tssr116792 12 78842576 to 78842592 16 - TSS region transcription start site region 116792
Atp6v1d 12 78842982 to 78861638 18656 - protein coding gene ATPase, H+ transporting, lysosomal V1 subunit D
Tssr116793 12 78845270 to 78845310 40 - TSS region transcription start site region 116793
Tssr116794 12 78846799 to 78846802 3 - TSS region transcription start site region 116794
Tssr116795 12 78857349 to 78857352 3 - TSS region transcription start site region 116795
Tssr114065 12 78861024 to 78861053 29 + TSS region transcription start site region 114065
Cpgi4795 12 78861074 to 78862477 1403 CpG island CpG island 4795
Tssr116796 12 78861466 to 78861609 143 - TSS region transcription start site region 116796
Tssr116797 12 78861610 to 78861617 7 - TSS region transcription start site region 116797
Tssr116798 12 78861636 to 78861641 5 - TSS region transcription start site region 116798
Tssr114066 12 78861678 to 78861688 10 + TSS region transcription start site region 114066
Tssr114067 12 78861693 to 78861749 56 + TSS region transcription start site region 114067
Tssr114068 12 78862025 to 78862071 46 + TSS region transcription start site region 114068
Eif2s1 12 78862072 to 78887010 24938 + protein coding gene eukaryotic translation initiation factor 2, subunit 1 alpha
Tssr114069 12 78862099 to 78862113 14 + TSS region transcription start site region 114069
Tssr114070 12 78862539 to 78862554 15 + TSS region transcription start site region 114070
Tssr114071 12 78887711 to 78887736 25 + TSS region transcription start site region 114071
Plek2 12 78888691 to 78906964 18273 - protein coding gene pleckstrin 2
Cpgi4796 12 78906661 to 78907262 601 CpG island CpG island 4796
Tssr116799 12 78906929 to 78906970 41 - TSS region transcription start site region 116799
Tssr116800 12 78908375 to 78908387 12 - TSS region transcription start site region 116800
Gm46359 12 78910285 to 78946524 36239 + lncRNA gene predicted gene, 46359
Tssr114072 12 78911930 to 78911933 3 + TSS region transcription start site region 114072
Cpgi4797 12 78911953 to 78912354 401 CpG island CpG island 4797
Gm46360 12 78928859 to 78940474 11615 + lncRNA gene predicted gene, 46360
E130002L11Rik 12 78956931 to 78960214 3283 unclassified gene RIKEN cDNA E130002L11 gene
Tmem229b 12 78961795 to 79007627 45832 - protein coding gene transmembrane protein 229B
Tssr3871 12 78980523 to 78980524 1 - TSS region transcription start site region 3871
Tssr3872 12 78980536 to 78980538 2 - TSS region transcription start site region 3872
Tssr116801 12 78980569 to 78980587 18 - TSS region transcription start site region 116801
Tssr116802 12 78980590 to 78980600 10 - TSS region transcription start site region 116802
Tssr116803 12 78980601 to 78980624 23 - TSS region transcription start site region 116803
Tssr116804 12 78980673 to 78980680 7 - TSS region transcription start site region 116804
Tssr116805 12 78980712 to 78980719 7 - TSS region transcription start site region 116805
Tssr116806 12 78980743 to 78980754 11 - TSS region transcription start site region 116806
Tssr116807 12 78980758 to 78980817 59 - TSS region transcription start site region 116807
Tssr116808 12 78983471 to 78983472 1 - TSS region transcription start site region 116808
Tssr116809 12 78983476 to 78983493 17 - TSS region transcription start site region 116809
Tssr116810 12 78989183 to 78989187 4 - TSS region transcription start site region 116810
Fbgl1 12 78993390 to 83115437 4122047 QTL fasting blood glucose 1
D12Mit4 12 78993390 to 78993590 200 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 4
Pbwg12 12 78993390 to 78993590 200 QTL postnatal body weight growth 12
Cpgi4798 12 79006417 to 79007584 1167 CpG island CpG island 4798
Tssr116811 12 79007276 to 79007346 70 - TSS region transcription start site region 116811
Tssr116812 12 79007347 to 79007358 11 - TSS region transcription start site region 116812
Tssr116813 12 79017341 to 79017352 11 - TSS region transcription start site region 116813
Tssr116814 12 79017360 to 79017390 30 - TSS region transcription start site region 116814
Cpgi4799 12 79028694 to 79029964 1270 CpG island CpG island 4799
Tssr114073 12 79029150 to 79029193 43 + TSS region transcription start site region 114073
Plekhh1 12 79029163 to 79081655 52492 + protein coding gene pleckstrin homology domain containing, family H (with MyTH4 domain) member 1
Tssr114074 12 79029196 to 79029218 22 + TSS region transcription start site region 114074
Gm35844 12 79029749 to 79040484 10735 - lncRNA gene predicted gene, 35844
Tssr114075 12 79040460 to 79040497 37 + TSS region transcription start site region 114075
Tssr116815 12 79068442 to 79068460 18 - TSS region transcription start site region 116815
Tssr114076 12 79069809 to 79069813 4 + TSS region transcription start site region 114076
Pigh 12 79080664 to 79089651 8987 - protein coding gene phosphatidylinositol glycan anchor biosynthesis, class H
9230116L04Rik 12 79088705 to 79103939 15234 - lincRNA gene RIKEN cDNA 9230116L04 gene
Cpgi4800 12 79089068 to 79089819 751 CpG island CpG island 4800
Tssr116816 12 79089623 to 79089660 37 - TSS region transcription start site region 116816
Tssr116817 12 79089661 to 79089687 26 - TSS region transcription start site region 116817
Tssr116818 12 79089698 to 79089719 21 - TSS region transcription start site region 116818
Tssr116819 12 79103913 to 79103950 37 - TSS region transcription start site region 116819
Gm27297 12 79107958 to 79108062 104 - snRNA gene predicted gene, 27297
Gm8255 12 79113720 to 79114024 304 + pseudogene predicted gene 8255
Cpgi4801 12 79130363 to 79131512 1149 CpG island CpG island 4801
Tssr3873 12 79130749 to 79130789 40 + TSS region transcription start site region 3873
Arg2 12 79130788 to 79156301 25513 + protein coding gene arginase type II
Tssr114077 12 79130800 to 79130816 16 + TSS region transcription start site region 114077
Tssr116820 12 79132168 to 79132183 15 - TSS region transcription start site region 116820
Tssr116821 12 79132193 to 79132215 22 - TSS region transcription start site region 116821
Tssr114078 12 79132364 to 79132367 3 + TSS region transcription start site region 114078
Tssr116822 12 79134536 to 79134537 1 - TSS region transcription start site region 116822
Tssr114079 12 79135653 to 79135657 4 + TSS region transcription start site region 114079
Tssr114080 12 79135979 to 79136007 28 + TSS region transcription start site region 114080
Tssr114081 12 79138324 to 79138360 36 + TSS region transcription start site region 114081
Tssr114082 12 79140001 to 79140028 27 + TSS region transcription start site region 114082
Gm40462 12 79140130 to 79147593 7463 - lncRNA gene predicted gene, 40462
Tssr114083 12 79141114 to 79141136 22 + TSS region transcription start site region 114083
Tssr114084 12 79145847 to 79145857 10 + TSS region transcription start site region 114084
Tssr114085 12 79149944 to 79149984 40 + TSS region transcription start site region 114085
Gm48780 12 79150936 to 79151932 996 - antisense lncRNA gene predicted gene, 48780
Tssr114086 12 79152005 to 79152025 20 + TSS region transcription start site region 114086
Vti1b 12 79156017 to 79172642 16625 - protein coding gene vesicle transport through interaction with t-SNAREs 1B
Gm17195 12 79163408 to 79163835 427 - pseudogene predicted gene 17195
Tssr116823 12 79165046 to 79165057 11 - TSS region transcription start site region 116823
Tssr114087 12 79168462 to 79168463 1 + TSS region transcription start site region 114087
Gm17194 12 79168486 to 79168833 347 + pseudogene predicted gene 17194
Cpgi4802 12 79172011 to 79173031 1020 CpG island CpG island 4802
Tssr116824 12 79172412 to 79172473 61 - TSS region transcription start site region 116824
Tssr116825 12 79172609 to 79172672 63 - TSS region transcription start site region 116825
Rdh11 12 79175551 to 79191819 16268 - protein coding gene retinol dehydrogenase 11
Tssr116826 12 79175880 to 79175898 18 - TSS region transcription start site region 116826
Tssr116827 12 79185708 to 79185735 27 - TSS region transcription start site region 116827
Tssr116828 12 79190955 to 79190976 21 - TSS region transcription start site region 116828
Tssr116829 12 79191812 to 79191832 20 - TSS region transcription start site region 116829
Tssr116830 12 79191839 to 79191861 22 - TSS region transcription start site region 116830
Tssr116831 12 79191875 to 79191889 14 - TSS region transcription start site region 116831
Tssr116832 12 79192201 to 79192210 9 - TSS region transcription start site region 116832
Tssr116833 12 79192213 to 79192242 29 - TSS region transcription start site region 116833
Tssr116834 12 79192248 to 79192284 36 - TSS region transcription start site region 116834
Tssr114088 12 79208883 to 79208888 5 + TSS region transcription start site region 114088
Tssr114089 12 79208904 to 79208923 19 + TSS region transcription start site region 114089
Rdh12 12 79208913 to 79222664 13751 + protein coding gene retinol dehydrogenase 12
Tssr114090 12 79208928 to 79208939 11 + TSS region transcription start site region 114090
Tssr114091 12 79209278 to 79209294 16 + TSS region transcription start site region 114091
Zfyve26 12 79232346 to 79296304 63958 - protein coding gene zinc finger, FYVE domain containing 26
Tssr116835 12 79249758 to 79249769 11 - TSS region transcription start site region 116835
Tssr3874 12 79253287 to 79253297 10 - TSS region transcription start site region 3874
Tssr114092 12 79255298 to 79255326 28 + TSS region transcription start site region 114092
Bw20 12 79261478 to 79261478 0 QTL body weight QTL 20
Cpgi4803 12 79296124 to 79296607 483 CpG island CpG island 4803
Tssr116836 12 79296266 to 79296310 44 - TSS region transcription start site region 116836
Tssr114093 12 79296437 to 79296450 13 + TSS region transcription start site region 114093
Rad51b 12 79297282 to 79814690 517408 + protein coding gene RAD51 paralog B
Tssr114094 12 79297311 to 79297327 16 + TSS region transcription start site region 114094
Tssr114095 12 79297345 to 79297377 32 + TSS region transcription start site region 114095
Cpgi4804 12 79297398 to 79297600 202 CpG island CpG island 4804
Tssr114096 12 79303316 to 79303339 23 + TSS region transcription start site region 114096