Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:78390743-79570754

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157 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cplaq10 12 15291025 to 78993590 63702565 QTL circadian period of locomotor activity 10
Gphn 12 78226379 to 78684772 458393 + protein coding gene gephyrin
Gm48231 12 78398135 to 78400540 2405 + unclassified gene predicted gene, 48231
Gm48230 12 78441595 to 78446746 5151 + unclassified gene predicted gene, 48230
Tssr114054 12 78481317 to 78481323 6 + TSS region transcription start site region 114054
Tssr114055 12 78486862 to 78486868 6 + TSS region transcription start site region 114055
A230092J17Rik 12 78495906 to 78497622 1716 unclassified gene RIKEN cDNA A230092J17 gene
Tssr114056 12 78691495 to 78691512 17 + TSS region transcription start site region 114056
Tssr114057 12 78691516 to 78691540 24 + TSS region transcription start site region 114057
Fam71d 12 78691535 to 78734516 42981 + protein coding gene family with sequence similarity 71, member D
Tssr114058 12 78691651 to 78691690 39 + TSS region transcription start site region 114058
Tssr114059 12 78723540 to 78723543 3 + TSS region transcription start site region 114059
Cpgi4794 12 78748317 to 78749717 1400 CpG island CpG island 4794
Tssr114060 12 78748865 to 78748920 55 + TSS region transcription start site region 114060
Mpp5 12 78748910 to 78840714 91804 + protein coding gene membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)
Tssr114061 12 78748955 to 78748971 16 + TSS region transcription start site region 114061
Tssr114062 12 78748996 to 78749019 23 + TSS region transcription start site region 114062
Tssr114063 12 78749027 to 78749041 14 + TSS region transcription start site region 114063
Tssr116791 12 78749589 to 78749600 11 - TSS region transcription start site region 116791
Gm25225 12 78752687 to 78752788 101 - snRNA gene predicted gene, 25225
Tssr114064 12 78802888 to 78802911 23 + TSS region transcription start site region 114064
Tssr116792 12 78842576 to 78842592 16 - TSS region transcription start site region 116792
Atp6v1d 12 78842982 to 78861638 18656 - protein coding gene ATPase, H+ transporting, lysosomal V1 subunit D
Tssr116793 12 78845270 to 78845310 40 - TSS region transcription start site region 116793
Tssr116794 12 78846799 to 78846802 3 - TSS region transcription start site region 116794
Tssr116795 12 78857349 to 78857352 3 - TSS region transcription start site region 116795
Tssr114065 12 78861024 to 78861053 29 + TSS region transcription start site region 114065
Cpgi4795 12 78861074 to 78862477 1403 CpG island CpG island 4795
Tssr116796 12 78861466 to 78861609 143 - TSS region transcription start site region 116796
Tssr116797 12 78861610 to 78861617 7 - TSS region transcription start site region 116797
Tssr116798 12 78861636 to 78861641 5 - TSS region transcription start site region 116798
Tssr114066 12 78861678 to 78861688 10 + TSS region transcription start site region 114066
Tssr114067 12 78861693 to 78861749 56 + TSS region transcription start site region 114067
Tssr114068 12 78862025 to 78862071 46 + TSS region transcription start site region 114068
Eif2s1 12 78862072 to 78887010 24938 + protein coding gene eukaryotic translation initiation factor 2, subunit 1 alpha
Tssr114069 12 78862099 to 78862113 14 + TSS region transcription start site region 114069
Tssr114070 12 78862539 to 78862554 15 + TSS region transcription start site region 114070
Tssr114071 12 78887711 to 78887736 25 + TSS region transcription start site region 114071
Plek2 12 78888691 to 78906964 18273 - protein coding gene pleckstrin 2
Cpgi4796 12 78906661 to 78907262 601 CpG island CpG island 4796
Tssr116799 12 78906929 to 78906970 41 - TSS region transcription start site region 116799
Tssr116800 12 78908375 to 78908387 12 - TSS region transcription start site region 116800
Gm46359 12 78910285 to 78946524 36239 + lncRNA gene predicted gene, 46359
Tssr114072 12 78911930 to 78911933 3 + TSS region transcription start site region 114072
Cpgi4797 12 78911953 to 78912354 401 CpG island CpG island 4797
Gm46360 12 78928859 to 78940474 11615 + lncRNA gene predicted gene, 46360
E130002L11Rik 12 78956931 to 78960214 3283 unclassified gene RIKEN cDNA E130002L11 gene
Tmem229b 12 78961795 to 79007627 45832 - protein coding gene transmembrane protein 229B
Tssr3871 12 78980523 to 78980524 1 - TSS region transcription start site region 3871
Tssr3872 12 78980536 to 78980538 2 - TSS region transcription start site region 3872
Tssr116801 12 78980569 to 78980587 18 - TSS region transcription start site region 116801
Tssr116802 12 78980590 to 78980600 10 - TSS region transcription start site region 116802
Tssr116803 12 78980601 to 78980624 23 - TSS region transcription start site region 116803
Tssr116804 12 78980673 to 78980680 7 - TSS region transcription start site region 116804
Tssr116805 12 78980712 to 78980719 7 - TSS region transcription start site region 116805
Tssr116806 12 78980743 to 78980754 11 - TSS region transcription start site region 116806
Tssr116807 12 78980758 to 78980817 59 - TSS region transcription start site region 116807
Tssr116808 12 78983471 to 78983472 1 - TSS region transcription start site region 116808
Tssr116809 12 78983476 to 78983493 17 - TSS region transcription start site region 116809
Tssr116810 12 78989183 to 78989187 4 - TSS region transcription start site region 116810
Pbwg12 12 78993390 to 78993590 200 QTL postnatal body weight growth 12
Fbgl1 12 78993390 to 83115437 4122047 QTL fasting blood glucose 1
D12Mit4 12 78993390 to 78993590 200 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 4
Cpgi4798 12 79006417 to 79007584 1167 CpG island CpG island 4798
Tssr116811 12 79007276 to 79007346 70 - TSS region transcription start site region 116811
Tssr116812 12 79007347 to 79007358 11 - TSS region transcription start site region 116812
Tssr116813 12 79017341 to 79017352 11 - TSS region transcription start site region 116813
Tssr116814 12 79017360 to 79017390 30 - TSS region transcription start site region 116814
Cpgi4799 12 79028694 to 79029964 1270 CpG island CpG island 4799
Tssr114073 12 79029150 to 79029193 43 + TSS region transcription start site region 114073
Plekhh1 12 79029163 to 79081655 52492 + protein coding gene pleckstrin homology domain containing, family H (with MyTH4 domain) member 1
Tssr114074 12 79029196 to 79029218 22 + TSS region transcription start site region 114074
Gm35844 12 79029749 to 79040484 10735 - lncRNA gene predicted gene, 35844
Tssr114075 12 79040460 to 79040497 37 + TSS region transcription start site region 114075
Tssr116815 12 79068442 to 79068460 18 - TSS region transcription start site region 116815
Tssr114076 12 79069809 to 79069813 4 + TSS region transcription start site region 114076
Pigh 12 79080664 to 79089651 8987 - protein coding gene phosphatidylinositol glycan anchor biosynthesis, class H
9230116L04Rik 12 79088705 to 79103939 15234 - lincRNA gene RIKEN cDNA 9230116L04 gene
Cpgi4800 12 79089068 to 79089819 751 CpG island CpG island 4800
Tssr116816 12 79089623 to 79089660 37 - TSS region transcription start site region 116816
Tssr116817 12 79089661 to 79089687 26 - TSS region transcription start site region 116817
Tssr116818 12 79089698 to 79089719 21 - TSS region transcription start site region 116818
Tssr116819 12 79103913 to 79103950 37 - TSS region transcription start site region 116819
Gm27297 12 79107958 to 79108062 104 - snRNA gene predicted gene, 27297
Gm8255 12 79113720 to 79114024 304 + pseudogene predicted gene 8255
Cpgi4801 12 79130363 to 79131512 1149 CpG island CpG island 4801
Tssr3873 12 79130749 to 79130789 40 + TSS region transcription start site region 3873
Arg2 12 79130788 to 79156301 25513 + protein coding gene arginase type II
Tssr114077 12 79130800 to 79130816 16 + TSS region transcription start site region 114077
Tssr116820 12 79132168 to 79132183 15 - TSS region transcription start site region 116820
Tssr116821 12 79132193 to 79132215 22 - TSS region transcription start site region 116821
Tssr114078 12 79132364 to 79132367 3 + TSS region transcription start site region 114078
Tssr116822 12 79134536 to 79134537 1 - TSS region transcription start site region 116822
Tssr114079 12 79135653 to 79135657 4 + TSS region transcription start site region 114079
Tssr114080 12 79135979 to 79136007 28 + TSS region transcription start site region 114080
Tssr114081 12 79138324 to 79138360 36 + TSS region transcription start site region 114081
Tssr114082 12 79140001 to 79140028 27 + TSS region transcription start site region 114082
Gm40462 12 79140130 to 79147593 7463 - lncRNA gene predicted gene, 40462
Tssr114083 12 79141114 to 79141136 22 + TSS region transcription start site region 114083
Tssr114084 12 79145847 to 79145857 10 + TSS region transcription start site region 114084
Tssr114085 12 79149944 to 79149984 40 + TSS region transcription start site region 114085
Gm48780 12 79150936 to 79151932 996 - antisense lncRNA gene predicted gene, 48780
Tssr114086 12 79152005 to 79152025 20 + TSS region transcription start site region 114086
Vti1b 12 79156017 to 79172642 16625 - protein coding gene vesicle transport through interaction with t-SNAREs 1B
Gm17195 12 79163408 to 79163835 427 - pseudogene predicted gene 17195
Tssr116823 12 79165046 to 79165057 11 - TSS region transcription start site region 116823
Tssr114087 12 79168462 to 79168463 1 + TSS region transcription start site region 114087
Gm17194 12 79168486 to 79168833 347 + pseudogene predicted gene 17194
Cpgi4802 12 79172011 to 79173031 1020 CpG island CpG island 4802
Tssr116824 12 79172412 to 79172473 61 - TSS region transcription start site region 116824
Tssr116825 12 79172609 to 79172672 63 - TSS region transcription start site region 116825
Rdh11 12 79175551 to 79191819 16268 - protein coding gene retinol dehydrogenase 11
Tssr116826 12 79175880 to 79175898 18 - TSS region transcription start site region 116826
Tssr116827 12 79185708 to 79185735 27 - TSS region transcription start site region 116827
Tssr116828 12 79190955 to 79190976 21 - TSS region transcription start site region 116828
Tssr116829 12 79191812 to 79191832 20 - TSS region transcription start site region 116829
Tssr116830 12 79191839 to 79191861 22 - TSS region transcription start site region 116830
Tssr116831 12 79191875 to 79191889 14 - TSS region transcription start site region 116831
Tssr116832 12 79192201 to 79192210 9 - TSS region transcription start site region 116832
Tssr116833 12 79192213 to 79192242 29 - TSS region transcription start site region 116833
Tssr116834 12 79192248 to 79192284 36 - TSS region transcription start site region 116834
Tssr114088 12 79208883 to 79208888 5 + TSS region transcription start site region 114088
Tssr114089 12 79208904 to 79208923 19 + TSS region transcription start site region 114089
Rdh12 12 79208913 to 79222664 13751 + protein coding gene retinol dehydrogenase 12
Tssr114090 12 79208928 to 79208939 11 + TSS region transcription start site region 114090
Tssr114091 12 79209278 to 79209294 16 + TSS region transcription start site region 114091
Zfyve26 12 79232346 to 79296304 63958 - protein coding gene zinc finger, FYVE domain containing 26
Tssr116835 12 79249758 to 79249769 11 - TSS region transcription start site region 116835
Tssr3874 12 79253287 to 79253297 10 - TSS region transcription start site region 3874
Tssr114092 12 79255298 to 79255326 28 + TSS region transcription start site region 114092
Bw20 12 79261478 to 79261478 0 QTL body weight QTL 20
Cpgi4803 12 79296124 to 79296607 483 CpG island CpG island 4803
Tssr116836 12 79296266 to 79296310 44 - TSS region transcription start site region 116836
Tssr114093 12 79296437 to 79296450 13 + TSS region transcription start site region 114093
Rad51b 12 79297282 to 79814690 517408 + protein coding gene RAD51 paralog B
Tssr114094 12 79297311 to 79297327 16 + TSS region transcription start site region 114094
Tssr114095 12 79297345 to 79297377 32 + TSS region transcription start site region 114095
Cpgi4804 12 79297398 to 79297600 202 CpG island CpG island 4804
Tssr114096 12 79303316 to 79303339 23 + TSS region transcription start site region 114096
Tssr114097 12 79327099 to 79327131 32 + TSS region transcription start site region 114097
Tssr114098 12 79327239 to 79327250 11 + TSS region transcription start site region 114098
Tssr114099 12 79335388 to 79335434 46 + TSS region transcription start site region 114099
Tssr114100 12 79383810 to 79383831 21 + TSS region transcription start site region 114100
Tssr114101 12 79386144 to 79386147 3 + TSS region transcription start site region 114101
Tssr3875 12 79390374 to 79390378 4 + TSS region transcription start site region 3875
D12Dcr7 12 79421507 to 79421609 102 DNA segment DNA Segment, Chr 12, Derry C. Roopenian 7
D12Ertd123e 12 79435701 to 79435916 215 DNA segment DNA segment, Chr 12, ERATO Doi 123, expressed
D12Mit156 12 79456953 to 79457150 197 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 156
Tssr114102 12 79482001 to 79482004 3 + TSS region transcription start site region 114102
Tssr114103 12 79490143 to 79490154 11 + TSS region transcription start site region 114103
2310061D13Rik 12 79493257 to 79493636 379 unclassified gene RIKEN cDNA 2310061D13 gene
Tssr116837 12 79493633 to 79493638 5 - TSS region transcription start site region 116837
Tssr114104 12 79532572 to 79532577 5 + TSS region transcription start site region 114104
Tssr114105 12 79547759 to 79547777 18 + TSS region transcription start site region 114105
Tssr114106 12 79559044 to 79559052 8 + TSS region transcription start site region 114106
Tssr114107 12 79559745 to 79559766 21 + TSS region transcription start site region 114107
Tssr114108 12 79570227 to 79570232 5 + TSS region transcription start site region 114108