Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:78331516-79051540

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cplaq10 12 15291025 to 78993590 63702565 QTL circadian period of locomotor activity 10
Gphn 12 78226379 to 78684772 458393 + protein coding gene gephyrin
Tssr114050 12 78350906 to 78350929 23 + TSS region transcription start site region 114050
Tssr114051 12 78351035 to 78351072 37 + TSS region transcription start site region 114051
Tssr114052 12 78356731 to 78356748 17 + TSS region transcription start site region 114052
Tssr114053 12 78356777 to 78356784 7 + TSS region transcription start site region 114053
4633402D09Rik 12 78362219 to 78365396 3177 unclassified gene RIKEN cDNA 4633402D09 gene
Gm48224 12 78380258 to 78380621 363 - pseudogene predicted gene, 48224
Gm48231 12 78398135 to 78400540 2405 + unclassified gene predicted gene, 48231
Gm48230 12 78441595 to 78446746 5151 + unclassified gene predicted gene, 48230
Tssr114054 12 78481317 to 78481323 6 + TSS region transcription start site region 114054
Tssr114055 12 78486862 to 78486868 6 + TSS region transcription start site region 114055
A230092J17Rik 12 78495906 to 78497622 1716 unclassified gene RIKEN cDNA A230092J17 gene
Tssr114056 12 78691495 to 78691512 17 + TSS region transcription start site region 114056
Tssr114057 12 78691516 to 78691540 24 + TSS region transcription start site region 114057
Fam71d 12 78691535 to 78734516 42981 + protein coding gene family with sequence similarity 71, member D
Tssr114058 12 78691651 to 78691690 39 + TSS region transcription start site region 114058
Tssr114059 12 78723540 to 78723543 3 + TSS region transcription start site region 114059
Cpgi4794 12 78748317 to 78749717 1400 CpG island CpG island 4794
Tssr114060 12 78748865 to 78748920 55 + TSS region transcription start site region 114060
Mpp5 12 78748910 to 78840714 91804 + protein coding gene membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)
Tssr114061 12 78748955 to 78748971 16 + TSS region transcription start site region 114061
Tssr114062 12 78748996 to 78749019 23 + TSS region transcription start site region 114062
Tssr114063 12 78749027 to 78749041 14 + TSS region transcription start site region 114063
Tssr116791 12 78749589 to 78749600 11 - TSS region transcription start site region 116791
Gm25225 12 78752687 to 78752788 101 - snRNA gene predicted gene, 25225
Tssr114064 12 78802888 to 78802911 23 + TSS region transcription start site region 114064
Tssr116792 12 78842576 to 78842592 16 - TSS region transcription start site region 116792
Atp6v1d 12 78842982 to 78861638 18656 - protein coding gene ATPase, H+ transporting, lysosomal V1 subunit D
Tssr116793 12 78845270 to 78845310 40 - TSS region transcription start site region 116793
Tssr116794 12 78846799 to 78846802 3 - TSS region transcription start site region 116794
Tssr116795 12 78857349 to 78857352 3 - TSS region transcription start site region 116795
Tssr114065 12 78861024 to 78861053 29 + TSS region transcription start site region 114065
Cpgi4795 12 78861074 to 78862477 1403 CpG island CpG island 4795
Tssr116796 12 78861466 to 78861609 143 - TSS region transcription start site region 116796
Tssr116797 12 78861610 to 78861617 7 - TSS region transcription start site region 116797
Tssr116798 12 78861636 to 78861641 5 - TSS region transcription start site region 116798
Tssr114066 12 78861678 to 78861688 10 + TSS region transcription start site region 114066
Tssr114067 12 78861693 to 78861749 56 + TSS region transcription start site region 114067
Tssr114068 12 78862025 to 78862071 46 + TSS region transcription start site region 114068
Eif2s1 12 78862072 to 78887010 24938 + protein coding gene eukaryotic translation initiation factor 2, subunit 1 alpha
Tssr114069 12 78862099 to 78862113 14 + TSS region transcription start site region 114069
Tssr114070 12 78862539 to 78862554 15 + TSS region transcription start site region 114070
Tssr114071 12 78887711 to 78887736 25 + TSS region transcription start site region 114071
Plek2 12 78888691 to 78906964 18273 - protein coding gene pleckstrin 2
Cpgi4796 12 78906661 to 78907262 601 CpG island CpG island 4796
Tssr116799 12 78906929 to 78906970 41 - TSS region transcription start site region 116799
Tssr116800 12 78908375 to 78908387 12 - TSS region transcription start site region 116800
Gm46359 12 78910285 to 78946524 36239 + lncRNA gene predicted gene, 46359
Tssr114072 12 78911930 to 78911933 3 + TSS region transcription start site region 114072
Cpgi4797 12 78911953 to 78912354 401 CpG island CpG island 4797
Gm46360 12 78928859 to 78940474 11615 + lncRNA gene predicted gene, 46360
E130002L11Rik 12 78956931 to 78960214 3283 unclassified gene RIKEN cDNA E130002L11 gene
Tmem229b 12 78961795 to 79007627 45832 - protein coding gene transmembrane protein 229B
Tssr3871 12 78980523 to 78980524 1 - TSS region transcription start site region 3871
Tssr3872 12 78980536 to 78980538 2 - TSS region transcription start site region 3872
Tssr116801 12 78980569 to 78980587 18 - TSS region transcription start site region 116801
Tssr116802 12 78980590 to 78980600 10 - TSS region transcription start site region 116802
Tssr116803 12 78980601 to 78980624 23 - TSS region transcription start site region 116803
Tssr116804 12 78980673 to 78980680 7 - TSS region transcription start site region 116804
Tssr116805 12 78980712 to 78980719 7 - TSS region transcription start site region 116805
Tssr116806 12 78980743 to 78980754 11 - TSS region transcription start site region 116806
Tssr116807 12 78980758 to 78980817 59 - TSS region transcription start site region 116807
Tssr116808 12 78983471 to 78983472 1 - TSS region transcription start site region 116808
Tssr116809 12 78983476 to 78983493 17 - TSS region transcription start site region 116809
Tssr116810 12 78989183 to 78989187 4 - TSS region transcription start site region 116810
D12Mit4 12 78993390 to 78993590 200 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 4
Fbgl1 12 78993390 to 83115437 4122047 QTL fasting blood glucose 1
Pbwg12 12 78993390 to 78993590 200 QTL postnatal body weight growth 12
Cpgi4798 12 79006417 to 79007584 1167 CpG island CpG island 4798
Tssr116811 12 79007276 to 79007346 70 - TSS region transcription start site region 116811
Tssr116812 12 79007347 to 79007358 11 - TSS region transcription start site region 116812
Tssr116813 12 79017341 to 79017352 11 - TSS region transcription start site region 116813
Tssr116814 12 79017360 to 79017390 30 - TSS region transcription start site region 116814
Cpgi4799 12 79028694 to 79029964 1270 CpG island CpG island 4799
Tssr114073 12 79029150 to 79029193 43 + TSS region transcription start site region 114073
Plekhh1 12 79029163 to 79081655 52492 + protein coding gene pleckstrin homology domain containing, family H (with MyTH4 domain) member 1
Tssr114074 12 79029196 to 79029218 22 + TSS region transcription start site region 114074
Gm35844 12 79029749 to 79040484 10735 - lncRNA gene predicted gene, 35844
Tssr114075 12 79040460 to 79040497 37 + TSS region transcription start site region 114075