Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:76891495-80491512

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423 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tmc1m3 12 5368440 to 76984429 71615989 QTL Tmc1 modifier 3
Cplaq10 12 15291025 to 78993590 63702565 QTL circadian period of locomotor activity 10
Fntb 12 76837391 to 76921412 84021 + protein coding gene farnesyltransferase, CAAX box, beta
Gm46358 12 76896781 to 76910279 13498 - lncRNA gene predicted gene, 46358
Tssr113994 12 76896813 to 76896814 1 + TSS region transcription start site region 113994
Tssr113995 12 76902144 to 76902155 11 + TSS region transcription start site region 113995
Tssr113996 12 76902170 to 76902182 12 + TSS region transcription start site region 113996
Tssr113997 12 76902187 to 76902201 14 + TSS region transcription start site region 113997
Tssr113998 12 76902207 to 76902231 24 + TSS region transcription start site region 113998
Tssr113999 12 76909442 to 76909456 14 + TSS region transcription start site region 113999
Tssr114000 12 76909483 to 76909496 13 + TSS region transcription start site region 114000
Tssr114001 12 76909501 to 76909511 10 + TSS region transcription start site region 114001
Tssr3867 12 76909514 to 76909519 5 + TSS region transcription start site region 3867
Tssr3868 12 76910381 to 76910393 12 - TSS region transcription start site region 3868
Tssr116761 12 76910462 to 76910499 37 - TSS region transcription start site region 116761
Tssr114002 12 76914636 to 76914655 19 + TSS region transcription start site region 114002
Tssr114003 12 76916417 to 76916442 25 + TSS region transcription start site region 114003
Tssr114004 12 76920744 to 76920757 13 + TSS region transcription start site region 114004
Max 12 76937269 to 76962201 24932 - protein coding gene Max protein
Tssr116762 12 76937813 to 76937863 50 - TSS region transcription start site region 116762
Tssr114005 12 76938659 to 76938682 23 + TSS region transcription start site region 114005
Tssr116763 12 76940072 to 76940100 28 - TSS region transcription start site region 116763
Gm47218 12 76940475 to 76941793 1318 - unclassified gene predicted gene, 47218
Cpgi4789 12 76961371 to 76962859 1488 CpG island CpG island 4789
Tssr116764 12 76961445 to 76961467 22 - TSS region transcription start site region 116764
Tssr116765 12 76962045 to 76962056 11 - TSS region transcription start site region 116765
Tssr116766 12 76962070 to 76962083 13 - TSS region transcription start site region 116766
Tssr116767 12 76962104 to 76962111 7 - TSS region transcription start site region 116767
Tssr116768 12 76962159 to 76962172 13 - TSS region transcription start site region 116768
Tssr116769 12 76962178 to 76962240 62 - TSS region transcription start site region 116769
Tssr114006 12 76966117 to 76966125 8 + TSS region transcription start site region 114006
Gm35041 12 76972485 to 77022040 49555 + lincRNA gene predicted gene, 35041
Tssr116770 12 76982823 to 76982826 3 - TSS region transcription start site region 116770
D12Mit52 12 76984294 to 76984429 135 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 52
Tssr114007 12 77001483 to 77001488 5 + TSS region transcription start site region 114007
Tssr114008 12 77038538 to 77038547 9 + TSS region transcription start site region 114008
Gm35189 12 77039597 to 77042201 2604 - lincRNA gene predicted gene, 35189
Tssr116771 12 77052834 to 77052847 13 - TSS region transcription start site region 116771
Tssr116772 12 77052850 to 77052867 17 - TSS region transcription start site region 116772
Tssr116773 12 77055006 to 77055024 18 - TSS region transcription start site region 116773
Tssr114009 12 77055136 to 77055160 24 + TSS region transcription start site region 114009
Tssr116774 12 77056955 to 77056987 32 - TSS region transcription start site region 116774
Tssr114010 12 77057234 to 77057258 24 + TSS region transcription start site region 114010
Tssr116775 12 77060189 to 77060202 13 - TSS region transcription start site region 116775
Tssr114011 12 77060222 to 77060271 49 + TSS region transcription start site region 114011
Tssr114012 12 77060311 to 77060319 8 + TSS region transcription start site region 114012
1700123J03Rik 12 77061039 to 77061253 214 unclassified gene RIKEN cDNA 1700123J03 gene
Tssr116776 12 77064222 to 77064245 23 - TSS region transcription start site region 116776
Tssr114013 12 77064398 to 77064438 40 + TSS region transcription start site region 114013
Tssr116777 12 77065753 to 77065782 29 - TSS region transcription start site region 116777
Tssr114014 12 77066226 to 77066263 37 + TSS region transcription start site region 114014
Tssr116778 12 77108556 to 77108559 3 - TSS region transcription start site region 116778
Tssr116779 12 77113619 to 77113628 9 - TSS region transcription start site region 116779
Tssr116780 12 77113630 to 77113655 25 - TSS region transcription start site region 116780
Gm22696 12 77116365 to 77116432 67 - miRNA gene predicted gene, 22696
Tssr116781 12 77124422 to 77124461 39 - TSS region transcription start site region 116781
Gm40446 12 77129021 to 77191718 62697 - lncRNA gene predicted gene, 40446
Tssr114015 12 77130834 to 77130847 13 + TSS region transcription start site region 114015
Tssr116782 12 77134335 to 77134356 21 - TSS region transcription start site region 116782
Cpgi4790 12 77143087 to 77143263 176 CpG island CpG island 4790
Tssr116783 12 77166908 to 77166914 6 - TSS region transcription start site region 116783
Tssr116784 12 77177402 to 77177413 11 - TSS region transcription start site region 116784
Tssr114016 12 77177746 to 77177749 3 + TSS region transcription start site region 114016
Tssr114017 12 77189386 to 77189423 37 + TSS region transcription start site region 114017
Tssr116785 12 77191722 to 77191724 2 - TSS region transcription start site region 116785
Tssr114018 12 77208287 to 77208304 17 + TSS region transcription start site region 114018
9530018F02Rik 12 77236065 to 77238663 2598 - bidirectional promoter lncRNA gene RIKEN cDNA 9530018F02 gene
Tssr114019 12 77237889 to 77237910 21 + TSS region transcription start site region 114019
Cpgi4791 12 77237913 to 77239856 1943 CpG island CpG island 4791
Tssr114020 12 77238093 to 77238122 29 + TSS region transcription start site region 114020
Fut8 12 77238125 to 77476338 238213 + protein coding gene fucosyltransferase 8
Tssr116786 12 77238639 to 77238663 24 - TSS region transcription start site region 116786
Tssr3869 12 77238706 to 77238735 29 + TSS region transcription start site region 3869
Tssr114021 12 77238740 to 77238799 59 + TSS region transcription start site region 114021
Tssr114022 12 77238801 to 77238831 30 + TSS region transcription start site region 114022
Tssr114023 12 77238838 to 77238870 32 + TSS region transcription start site region 114023
Tssr114024 12 77238996 to 77239035 39 + TSS region transcription start site region 114024
Tssr114025 12 77239036 to 77239074 38 + TSS region transcription start site region 114025
Tssr114026 12 77239109 to 77239126 17 + TSS region transcription start site region 114026
Tssr114027 12 77239128 to 77239142 14 + TSS region transcription start site region 114027
Tssr114028 12 77239153 to 77239186 33 + TSS region transcription start site region 114028
Tssr114029 12 77239348 to 77239365 17 + TSS region transcription start site region 114029
Tssr114030 12 77241031 to 77241035 4 + TSS region transcription start site region 114030
Tssr114031 12 77241347 to 77241365 18 + TSS region transcription start site region 114031
Tssr114032 12 77332036 to 77332050 14 + TSS region transcription start site region 114032
Gm19234 12 77370492 to 77373312 2820 + pseudogene predicted gene, 19234
Gm24775 12 77393104 to 77393202 98 + snRNA gene predicted gene, 24775
Tssr3870 12 77418412 to 77418420 8 + TSS region transcription start site region 3870
Gm25926 12 77418417 to 77418576 159 + snRNA gene predicted gene, 25926
Gm19025 12 77452404 to 77453445 1041 - pseudogene predicted gene, 19025
Tssr116787 12 77453214 to 77453229 15 - TSS region transcription start site region 116787
Tssr114033 12 77467322 to 77467326 4 + TSS region transcription start site region 114033
Cpgi4792 12 77507663 to 77508144 481 CpG island CpG island 4792
Gm48177 12 77525282 to 77526398 1116 - pseudogene predicted gene, 48177
Gm35240 12 77553347 to 77569709 16362 + lincRNA gene predicted gene, 35240
Gm48196 12 77577094 to 77577383 289 + pseudogene predicted gene, 48196
Gm4864 12 77623549 to 77625009 1460 - pseudogene predicted gene 4864
Tssr116788 12 77625039 to 77625042 3 - TSS region transcription start site region 116788
4930458K08Rik 12 77683061 to 77689491 6430 + lincRNA gene RIKEN cDNA 4930458K08 gene
Gm35440 12 77749899 to 77786616 36717 + lncRNA gene predicted gene, 35440
Gm35488 12 77789877 to 77812835 22958 - lncRNA gene predicted gene, 35488
Gm24070 12 77814680 to 77814809 129 - snoRNA gene predicted gene, 24070
Gm8219 12 77819582 to 77819823 241 + pseudogene predicted gene 8219
Pbft6 12 78158653 to 78158653 0 QTL percent body fat 6
Gm24994 12 78165546 to 78165666 120 + snoRNA gene predicted gene, 24994
Tssr114034 12 78194225 to 78194238 13 + TSS region transcription start site region 114034
Gm6657 12 78194242 to 78209029 14787 + protein coding gene predicted gene 6657
Tssr114035 12 78197050 to 78197061 11 + TSS region transcription start site region 114035
Tssr114036 12 78197072 to 78197086 14 + TSS region transcription start site region 114036
Gm48226 12 78222286 to 78226525 4239 - bidirectional promoter lncRNA gene predicted gene, 48226
Cpgi4793 12 78225774 to 78227790 2016 CpG island CpG island 4793
Tssr114037 12 78226349 to 78226360 11 + TSS region transcription start site region 114037
Tssr114038 12 78226370 to 78226414 44 + TSS region transcription start site region 114038
Gphn 12 78226379 to 78684772 458393 + protein coding gene gephyrin
Tssr114039 12 78226418 to 78226419 1 + TSS region transcription start site region 114039
Tssr114040 12 78226429 to 78226440 11 + TSS region transcription start site region 114040
Tssr114041 12 78226586 to 78226620 34 + TSS region transcription start site region 114041
Tssr114042 12 78226627 to 78226652 25 + TSS region transcription start site region 114042
Tssr114043 12 78226669 to 78226680 11 + TSS region transcription start site region 114043
Tssr114044 12 78226685 to 78226710 25 + TSS region transcription start site region 114044
Tssr114045 12 78226712 to 78226773 61 + TSS region transcription start site region 114045
Tssr114046 12 78227559 to 78227562 3 + TSS region transcription start site region 114046
Tssr114047 12 78230498 to 78230502 4 + TSS region transcription start site region 114047
D130095D21Rik 12 78248581 to 78249905 1324 unclassified gene RIKEN cDNA D130095D21 gene
Tssr114048 12 78248587 to 78248591 4 + TSS region transcription start site region 114048
Gm18899 12 78255890 to 78256435 545 - pseudogene predicted gene, 18899
Tssr116789 12 78256504 to 78256520 16 - TSS region transcription start site region 116789
Gm48225 12 78261293 to 78266375 5082 + unclassified gene predicted gene, 48225
Tssr116790 12 78299079 to 78299082 3 - TSS region transcription start site region 116790
Tssr114049 12 78303640 to 78303659 19 + TSS region transcription start site region 114049
Tssr114050 12 78350906 to 78350929 23 + TSS region transcription start site region 114050
Tssr114051 12 78351035 to 78351072 37 + TSS region transcription start site region 114051
Tssr114052 12 78356731 to 78356748 17 + TSS region transcription start site region 114052
Tssr114053 12 78356777 to 78356784 7 + TSS region transcription start site region 114053
4633402D09Rik 12 78362219 to 78365396 3177 unclassified gene RIKEN cDNA 4633402D09 gene
Gm48224 12 78380258 to 78380621 363 - pseudogene predicted gene, 48224
Gm48231 12 78398135 to 78400540 2405 + unclassified gene predicted gene, 48231
Gm48230 12 78441595 to 78446746 5151 + unclassified gene predicted gene, 48230
Tssr114054 12 78481317 to 78481323 6 + TSS region transcription start site region 114054
Tssr114055 12 78486862 to 78486868 6 + TSS region transcription start site region 114055
A230092J17Rik 12 78495906 to 78497622 1716 unclassified gene RIKEN cDNA A230092J17 gene
Tssr114056 12 78691495 to 78691512 17 + TSS region transcription start site region 114056
Tssr114057 12 78691516 to 78691540 24 + TSS region transcription start site region 114057
Fam71d 12 78691535 to 78734516 42981 + protein coding gene family with sequence similarity 71, member D
Tssr114058 12 78691651 to 78691690 39 + TSS region transcription start site region 114058
Tssr114059 12 78723540 to 78723543 3 + TSS region transcription start site region 114059
Cpgi4794 12 78748317 to 78749717 1400 CpG island CpG island 4794
Tssr114060 12 78748865 to 78748920 55 + TSS region transcription start site region 114060
Mpp5 12 78748910 to 78840714 91804 + protein coding gene membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)
Tssr114061 12 78748955 to 78748971 16 + TSS region transcription start site region 114061
Tssr114062 12 78748996 to 78749019 23 + TSS region transcription start site region 114062
Tssr114063 12 78749027 to 78749041 14 + TSS region transcription start site region 114063
Tssr116791 12 78749589 to 78749600 11 - TSS region transcription start site region 116791
Gm25225 12 78752687 to 78752788 101 - snRNA gene predicted gene, 25225
Tssr114064 12 78802888 to 78802911 23 + TSS region transcription start site region 114064
Tssr116792 12 78842576 to 78842592 16 - TSS region transcription start site region 116792
Atp6v1d 12 78842982 to 78861638 18656 - protein coding gene ATPase, H+ transporting, lysosomal V1 subunit D
Tssr116793 12 78845270 to 78845310 40 - TSS region transcription start site region 116793
Tssr116794 12 78846799 to 78846802 3 - TSS region transcription start site region 116794
Tssr116795 12 78857349 to 78857352 3 - TSS region transcription start site region 116795
Tssr114065 12 78861024 to 78861053 29 + TSS region transcription start site region 114065
Cpgi4795 12 78861074 to 78862477 1403 CpG island CpG island 4795
Tssr116796 12 78861466 to 78861609 143 - TSS region transcription start site region 116796
Tssr116797 12 78861610 to 78861617 7 - TSS region transcription start site region 116797
Tssr116798 12 78861636 to 78861641 5 - TSS region transcription start site region 116798
Tssr114066 12 78861678 to 78861688 10 + TSS region transcription start site region 114066
Tssr114067 12 78861693 to 78861749 56 + TSS region transcription start site region 114067
Tssr114068 12 78862025 to 78862071 46 + TSS region transcription start site region 114068
Eif2s1 12 78862072 to 78887010 24938 + protein coding gene eukaryotic translation initiation factor 2, subunit 1 alpha
Tssr114069 12 78862099 to 78862113 14 + TSS region transcription start site region 114069
Tssr114070 12 78862539 to 78862554 15 + TSS region transcription start site region 114070
Tssr114071 12 78887711 to 78887736 25 + TSS region transcription start site region 114071
Plek2 12 78888691 to 78906964 18273 - protein coding gene pleckstrin 2
Cpgi4796 12 78906661 to 78907262 601 CpG island CpG island 4796
Tssr116799 12 78906929 to 78906970 41 - TSS region transcription start site region 116799
Tssr116800 12 78908375 to 78908387 12 - TSS region transcription start site region 116800
Gm46359 12 78910285 to 78946524 36239 + lncRNA gene predicted gene, 46359
Tssr114072 12 78911930 to 78911933 3 + TSS region transcription start site region 114072
Cpgi4797 12 78911953 to 78912354 401 CpG island CpG island 4797
Gm46360 12 78928859 to 78940474 11615 + lncRNA gene predicted gene, 46360
E130002L11Rik 12 78956931 to 78960214 3283 unclassified gene RIKEN cDNA E130002L11 gene
Tmem229b 12 78961795 to 79007627 45832 - protein coding gene transmembrane protein 229B
Tssr3871 12 78980523 to 78980524 1 - TSS region transcription start site region 3871
Tssr3872 12 78980536 to 78980538 2 - TSS region transcription start site region 3872
Tssr116801 12 78980569 to 78980587 18 - TSS region transcription start site region 116801
Tssr116802 12 78980590 to 78980600 10 - TSS region transcription start site region 116802
Tssr116803 12 78980601 to 78980624 23 - TSS region transcription start site region 116803
Tssr116804 12 78980673 to 78980680 7 - TSS region transcription start site region 116804
Tssr116805 12 78980712 to 78980719 7 - TSS region transcription start site region 116805
Tssr116806 12 78980743 to 78980754 11 - TSS region transcription start site region 116806
Tssr116807 12 78980758 to 78980817 59 - TSS region transcription start site region 116807
Tssr116808 12 78983471 to 78983472 1 - TSS region transcription start site region 116808
Tssr116809 12 78983476 to 78983493 17 - TSS region transcription start site region 116809
Tssr116810 12 78989183 to 78989187 4 - TSS region transcription start site region 116810
Pbwg12 12 78993390 to 78993590 200 QTL postnatal body weight growth 12
D12Mit4 12 78993390 to 78993590 200 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 4
Fbgl1 12 78993390 to 83115437 4122047 QTL fasting blood glucose 1
Cpgi4798 12 79006417 to 79007584 1167 CpG island CpG island 4798
Tssr116811 12 79007276 to 79007346 70 - TSS region transcription start site region 116811
Tssr116812 12 79007347 to 79007358 11 - TSS region transcription start site region 116812