Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:76536495-80846512

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543 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tmc1m3 12 5368440 to 76984429 71615989 QTL Tmc1 modifier 3
Cplaq10 12 15291025 to 78993590 63702565 QTL circadian period of locomotor activity 10
Plekhg3 12 76533246 to 76580489 47243 + protein coding gene pleckstrin homology domain containing, family G (with RhoGef domain) member 3
AI463170 12 76546972 to 76547925 953 - antisense lncRNA gene expressed sequence AI463170
Tssr113979 12 76547076 to 76547088 12 + TSS region transcription start site region 113979
Tssr116731 12 76547848 to 76547874 26 - TSS region transcription start site region 116731
Tssr113980 12 76571523 to 76571539 16 + TSS region transcription start site region 113980
Tssr113981 12 76571544 to 76571567 23 + TSS region transcription start site region 113981
Tssr113982 12 76573104 to 76573115 11 + TSS region transcription start site region 113982
Sptb 12 76580488 to 76710547 130059 - protein coding gene spectrin beta, erythrocytic
Tssr116732 12 76596701 to 76596722 21 - TSS region transcription start site region 116732
Tssr116733 12 76597400 to 76597412 12 - TSS region transcription start site region 116733
Tssr116734 12 76597590 to 76597619 29 - TSS region transcription start site region 116734
Tssr116735 12 76609411 to 76609417 6 - TSS region transcription start site region 116735
Tssr116736 12 76612647 to 76612660 13 - TSS region transcription start site region 116736
Tssr116737 12 76612662 to 76612669 7 - TSS region transcription start site region 116737
Tssr116738 12 76612678 to 76612701 23 - TSS region transcription start site region 116738
Tssr116739 12 76612708 to 76612728 20 - TSS region transcription start site region 116739
Tssr116740 12 76643728 to 76643743 15 - TSS region transcription start site region 116740
Tssr116741 12 76643763 to 76643775 12 - TSS region transcription start site region 116741
Tssr116742 12 76643819 to 76643835 16 - TSS region transcription start site region 116742
Tssr116743 12 76643919 to 76643922 3 - TSS region transcription start site region 116743
Tssr116744 12 76668696 to 76668709 13 - TSS region transcription start site region 116744
Tssr113983 12 76676296 to 76676301 5 + TSS region transcription start site region 113983
Cpgi4784 12 76676515 to 76676673 158 CpG island CpG island 4784
Gm24010 12 76691980 to 76692261 281 + unclassified non-coding RNA gene predicted gene, 24010
Cpgi4785 12 76709332 to 76711018 1686 CpG island CpG island 4785
Tssr116745 12 76709955 to 76709995 40 - TSS region transcription start site region 116745
Tssr116746 12 76709997 to 76710026 29 - TSS region transcription start site region 116746
Tssr116747 12 76710029 to 76710054 25 - TSS region transcription start site region 116747
Tssr116748 12 76710077 to 76710088 11 - TSS region transcription start site region 116748
Tssr116749 12 76710095 to 76710107 12 - TSS region transcription start site region 116749
Tssr116750 12 76710120 to 76710153 33 - TSS region transcription start site region 116750
Tssr113984 12 76742675 to 76742678 3 + TSS region transcription start site region 113984
Cpgi4786 12 76765409 to 76766094 685 CpG island CpG island 4786
Tssr113985 12 76765527 to 76765584 57 + TSS region transcription start site region 113985
Churc1 12 76765573 to 76783180 17607 + protein coding gene churchill domain containing 1
Tssr113986 12 76765843 to 76765857 14 + TSS region transcription start site region 113986
Tssr113987 12 76773775 to 76773779 4 + TSS region transcription start site region 113987
Tssr113988 12 76775129 to 76775141 12 + TSS region transcription start site region 113988
Tssr113989 12 76782272 to 76782276 4 + TSS region transcription start site region 113989
Gpx2 12 76792335 to 76795554 3219 - protein coding gene glutathione peroxidase 2
Tssr113990 12 76792761 to 76792788 27 + TSS region transcription start site region 113990
Tssr116751 12 76795316 to 76795355 39 - TSS region transcription start site region 116751
Tssr116752 12 76795425 to 76795464 39 - TSS region transcription start site region 116752
Tssr116753 12 76795471 to 76795478 7 - TSS region transcription start site region 116753
Tssr116754 12 76795489 to 76795521 32 - TSS region transcription start site region 116754
Tssr3866 12 76795549 to 76795552 3 - TSS region transcription start site region 3866
Rab15 12 76797960 to 76822763 24803 - protein coding gene RAB15, member RAS oncogene family
Gm34988 12 76818317 to 76818794 477 + lncRNA gene predicted gene, 34988
Tssr116755 12 76818389 to 76818395 6 - TSS region transcription start site region 116755
Cpgi4787 12 76821926 to 76823078 1152 CpG island CpG island 4787
Tssr116756 12 76822386 to 76822414 28 - TSS region transcription start site region 116756
Tssr116757 12 76822420 to 76822431 11 - TSS region transcription start site region 116757
Tssr116758 12 76822465 to 76822508 43 - TSS region transcription start site region 116758
Tssr116759 12 76822510 to 76822558 48 - TSS region transcription start site region 116759
Tssr116760 12 76822736 to 76822757 21 - TSS region transcription start site region 116760
Cpgi4788 12 76837208 to 76838092 884 CpG island CpG island 4788
Fntb 12 76837391 to 76921412 84021 + protein coding gene farnesyltransferase, CAAX box, beta
Tssr113991 12 76837408 to 76837466 58 + TSS region transcription start site region 113991
Tssr113992 12 76837469 to 76837480 11 + TSS region transcription start site region 113992
Gm46357 12 76858709 to 76869172 10463 - lncRNA gene predicted gene, 46357
Tssr113993 12 76887045 to 76887083 38 + TSS region transcription start site region 113993
Gm46358 12 76896781 to 76910279 13498 - lncRNA gene predicted gene, 46358
Tssr113994 12 76896813 to 76896814 1 + TSS region transcription start site region 113994
Tssr113995 12 76902144 to 76902155 11 + TSS region transcription start site region 113995
Tssr113996 12 76902170 to 76902182 12 + TSS region transcription start site region 113996
Tssr113997 12 76902187 to 76902201 14 + TSS region transcription start site region 113997
Tssr113998 12 76902207 to 76902231 24 + TSS region transcription start site region 113998
Tssr113999 12 76909442 to 76909456 14 + TSS region transcription start site region 113999
Tssr114000 12 76909483 to 76909496 13 + TSS region transcription start site region 114000
Tssr114001 12 76909501 to 76909511 10 + TSS region transcription start site region 114001
Tssr3867 12 76909514 to 76909519 5 + TSS region transcription start site region 3867
Tssr3868 12 76910381 to 76910393 12 - TSS region transcription start site region 3868
Tssr116761 12 76910462 to 76910499 37 - TSS region transcription start site region 116761
Tssr114002 12 76914636 to 76914655 19 + TSS region transcription start site region 114002
Tssr114003 12 76916417 to 76916442 25 + TSS region transcription start site region 114003
Tssr114004 12 76920744 to 76920757 13 + TSS region transcription start site region 114004
Max 12 76937269 to 76962201 24932 - protein coding gene Max protein
Tssr116762 12 76937813 to 76937863 50 - TSS region transcription start site region 116762
Tssr114005 12 76938659 to 76938682 23 + TSS region transcription start site region 114005
Tssr116763 12 76940072 to 76940100 28 - TSS region transcription start site region 116763
Gm47218 12 76940475 to 76941793 1318 - unclassified gene predicted gene, 47218
Cpgi4789 12 76961371 to 76962859 1488 CpG island CpG island 4789
Tssr116764 12 76961445 to 76961467 22 - TSS region transcription start site region 116764
Tssr116765 12 76962045 to 76962056 11 - TSS region transcription start site region 116765
Tssr116766 12 76962070 to 76962083 13 - TSS region transcription start site region 116766
Tssr116767 12 76962104 to 76962111 7 - TSS region transcription start site region 116767
Tssr116768 12 76962159 to 76962172 13 - TSS region transcription start site region 116768
Tssr116769 12 76962178 to 76962240 62 - TSS region transcription start site region 116769
Tssr114006 12 76966117 to 76966125 8 + TSS region transcription start site region 114006
Gm35041 12 76972485 to 77022040 49555 + lincRNA gene predicted gene, 35041
Tssr116770 12 76982823 to 76982826 3 - TSS region transcription start site region 116770
D12Mit52 12 76984294 to 76984429 135 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 52
Tssr114007 12 77001483 to 77001488 5 + TSS region transcription start site region 114007
Tssr114008 12 77038538 to 77038547 9 + TSS region transcription start site region 114008
Gm35189 12 77039597 to 77042201 2604 - lincRNA gene predicted gene, 35189
Tssr116771 12 77052834 to 77052847 13 - TSS region transcription start site region 116771
Tssr116772 12 77052850 to 77052867 17 - TSS region transcription start site region 116772
Tssr116773 12 77055006 to 77055024 18 - TSS region transcription start site region 116773
Tssr114009 12 77055136 to 77055160 24 + TSS region transcription start site region 114009
Tssr116774 12 77056955 to 77056987 32 - TSS region transcription start site region 116774
Tssr114010 12 77057234 to 77057258 24 + TSS region transcription start site region 114010
Tssr116775 12 77060189 to 77060202 13 - TSS region transcription start site region 116775
Tssr114011 12 77060222 to 77060271 49 + TSS region transcription start site region 114011
Tssr114012 12 77060311 to 77060319 8 + TSS region transcription start site region 114012
1700123J03Rik 12 77061039 to 77061253 214 unclassified gene RIKEN cDNA 1700123J03 gene
Tssr116776 12 77064222 to 77064245 23 - TSS region transcription start site region 116776
Tssr114013 12 77064398 to 77064438 40 + TSS region transcription start site region 114013
Tssr116777 12 77065753 to 77065782 29 - TSS region transcription start site region 116777
Tssr114014 12 77066226 to 77066263 37 + TSS region transcription start site region 114014
Tssr116778 12 77108556 to 77108559 3 - TSS region transcription start site region 116778
Tssr116779 12 77113619 to 77113628 9 - TSS region transcription start site region 116779
Tssr116780 12 77113630 to 77113655 25 - TSS region transcription start site region 116780
Gm22696 12 77116365 to 77116432 67 - miRNA gene predicted gene, 22696
Tssr116781 12 77124422 to 77124461 39 - TSS region transcription start site region 116781
Gm40446 12 77129021 to 77191718 62697 - lncRNA gene predicted gene, 40446
Tssr114015 12 77130834 to 77130847 13 + TSS region transcription start site region 114015
Tssr116782 12 77134335 to 77134356 21 - TSS region transcription start site region 116782
Cpgi4790 12 77143087 to 77143263 176 CpG island CpG island 4790
Tssr116783 12 77166908 to 77166914 6 - TSS region transcription start site region 116783
Tssr116784 12 77177402 to 77177413 11 - TSS region transcription start site region 116784
Tssr114016 12 77177746 to 77177749 3 + TSS region transcription start site region 114016
Tssr114017 12 77189386 to 77189423 37 + TSS region transcription start site region 114017
Tssr116785 12 77191722 to 77191724 2 - TSS region transcription start site region 116785
Tssr114018 12 77208287 to 77208304 17 + TSS region transcription start site region 114018
9530018F02Rik 12 77236065 to 77238663 2598 - bidirectional promoter lncRNA gene RIKEN cDNA 9530018F02 gene
Tssr114019 12 77237889 to 77237910 21 + TSS region transcription start site region 114019
Cpgi4791 12 77237913 to 77239856 1943 CpG island CpG island 4791
Tssr114020 12 77238093 to 77238122 29 + TSS region transcription start site region 114020
Fut8 12 77238125 to 77476338 238213 + protein coding gene fucosyltransferase 8
Tssr116786 12 77238639 to 77238663 24 - TSS region transcription start site region 116786
Tssr3869 12 77238706 to 77238735 29 + TSS region transcription start site region 3869
Tssr114021 12 77238740 to 77238799 59 + TSS region transcription start site region 114021
Tssr114022 12 77238801 to 77238831 30 + TSS region transcription start site region 114022
Tssr114023 12 77238838 to 77238870 32 + TSS region transcription start site region 114023
Tssr114024 12 77238996 to 77239035 39 + TSS region transcription start site region 114024
Tssr114025 12 77239036 to 77239074 38 + TSS region transcription start site region 114025
Tssr114026 12 77239109 to 77239126 17 + TSS region transcription start site region 114026
Tssr114027 12 77239128 to 77239142 14 + TSS region transcription start site region 114027
Tssr114028 12 77239153 to 77239186 33 + TSS region transcription start site region 114028
Tssr114029 12 77239348 to 77239365 17 + TSS region transcription start site region 114029
Tssr114030 12 77241031 to 77241035 4 + TSS region transcription start site region 114030
Tssr114031 12 77241347 to 77241365 18 + TSS region transcription start site region 114031
Tssr114032 12 77332036 to 77332050 14 + TSS region transcription start site region 114032
Gm19234 12 77370492 to 77373312 2820 + pseudogene predicted gene, 19234
Gm24775 12 77393104 to 77393202 98 + snRNA gene predicted gene, 24775
Tssr3870 12 77418412 to 77418420 8 + TSS region transcription start site region 3870
Gm25926 12 77418417 to 77418576 159 + snRNA gene predicted gene, 25926
Gm19025 12 77452404 to 77453445 1041 - pseudogene predicted gene, 19025
Tssr116787 12 77453214 to 77453229 15 - TSS region transcription start site region 116787
Tssr114033 12 77467322 to 77467326 4 + TSS region transcription start site region 114033
Cpgi4792 12 77507663 to 77508144 481 CpG island CpG island 4792
Gm48177 12 77525282 to 77526398 1116 - pseudogene predicted gene, 48177
Gm35240 12 77553347 to 77569709 16362 + lincRNA gene predicted gene, 35240
Gm48196 12 77577094 to 77577383 289 + pseudogene predicted gene, 48196
Gm4864 12 77623549 to 77625009 1460 - pseudogene predicted gene 4864
Tssr116788 12 77625039 to 77625042 3 - TSS region transcription start site region 116788
4930458K08Rik 12 77683061 to 77689491 6430 + lincRNA gene RIKEN cDNA 4930458K08 gene
Gm35440 12 77749899 to 77786616 36717 + lncRNA gene predicted gene, 35440
Gm35488 12 77789877 to 77812835 22958 - lncRNA gene predicted gene, 35488
Gm24070 12 77814680 to 77814809 129 - snoRNA gene predicted gene, 24070
Gm8219 12 77819582 to 77819823 241 + pseudogene predicted gene 8219
Pbft6 12 78158653 to 78158653 0 QTL percent body fat 6
Gm24994 12 78165546 to 78165666 120 + snoRNA gene predicted gene, 24994
Tssr114034 12 78194225 to 78194238 13 + TSS region transcription start site region 114034
Gm6657 12 78194242 to 78209029 14787 + protein coding gene predicted gene 6657
Tssr114035 12 78197050 to 78197061 11 + TSS region transcription start site region 114035
Tssr114036 12 78197072 to 78197086 14 + TSS region transcription start site region 114036
Gm48226 12 78222286 to 78226525 4239 - bidirectional promoter lncRNA gene predicted gene, 48226
Cpgi4793 12 78225774 to 78227790 2016 CpG island CpG island 4793
Tssr114037 12 78226349 to 78226360 11 + TSS region transcription start site region 114037
Tssr114038 12 78226370 to 78226414 44 + TSS region transcription start site region 114038
Gphn 12 78226379 to 78684772 458393 + protein coding gene gephyrin
Tssr114039 12 78226418 to 78226419 1 + TSS region transcription start site region 114039
Tssr114040 12 78226429 to 78226440 11 + TSS region transcription start site region 114040
Tssr114041 12 78226586 to 78226620 34 + TSS region transcription start site region 114041
Tssr114042 12 78226627 to 78226652 25 + TSS region transcription start site region 114042
Tssr114043 12 78226669 to 78226680 11 + TSS region transcription start site region 114043
Tssr114044 12 78226685 to 78226710 25 + TSS region transcription start site region 114044
Tssr114045 12 78226712 to 78226773 61 + TSS region transcription start site region 114045
Tssr114046 12 78227559 to 78227562 3 + TSS region transcription start site region 114046
Tssr114047 12 78230498 to 78230502 4 + TSS region transcription start site region 114047
D130095D21Rik 12 78248581 to 78249905 1324 unclassified gene RIKEN cDNA D130095D21 gene
Tssr114048 12 78248587 to 78248591 4 + TSS region transcription start site region 114048
Gm18899 12 78255890 to 78256435 545 - pseudogene predicted gene, 18899
Tssr116789 12 78256504 to 78256520 16 - TSS region transcription start site region 116789
Gm48225 12 78261293 to 78266375 5082 + unclassified gene predicted gene, 48225
Tssr116790 12 78299079 to 78299082 3 - TSS region transcription start site region 116790
Tssr114049 12 78303640 to 78303659 19 + TSS region transcription start site region 114049
Tssr114050 12 78350906 to 78350929 23 + TSS region transcription start site region 114050
Tssr114051 12 78351035 to 78351072 37 + TSS region transcription start site region 114051
Tssr114052 12 78356731 to 78356748 17 + TSS region transcription start site region 114052
Tssr114053 12 78356777 to 78356784 7 + TSS region transcription start site region 114053
4633402D09Rik 12 78362219 to 78365396 3177 unclassified gene RIKEN cDNA 4633402D09 gene
Gm48224 12 78380258 to 78380621 363 - pseudogene predicted gene, 48224
Gm48231 12 78398135 to 78400540 2405 + unclassified gene predicted gene, 48231
Gm48230 12 78441595 to 78446746 5151 + unclassified gene predicted gene, 48230
Tssr114054 12 78481317 to 78481323 6 + TSS region transcription start site region 114054
Tssr114055 12 78486862 to 78486868 6 + TSS region transcription start site region 114055