Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:76297551-76537585

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75 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mthfd1 12 76255298 to 76319803 64505 + protein coding gene methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase
Gm34868 12 76286882 to 76300303 13421 - antisense lncRNA gene predicted gene, 34868
Tssr116715 12 76306964 to 76307007 43 - TSS region transcription start site region 116715
Tssr113943 12 76307062 to 76307074 12 + TSS region transcription start site region 113943
Tssr113944 12 76307099 to 76307111 12 + TSS region transcription start site region 113944
Tssr113945 12 76307143 to 76307157 14 + TSS region transcription start site region 113945
Gm40443 12 76309841 to 76323169 13328 - lncRNA gene predicted gene, 40443
Tssr113946 12 76319057 to 76319061 4 + TSS region transcription start site region 113946
Cpgi4778 12 76324613 to 76325299 686 CpG island CpG island 4778
Tssr113947 12 76324838 to 76324841 3 + TSS region transcription start site region 113947
Tssr113948 12 76324860 to 76324898 38 + TSS region transcription start site region 113948
Akap5 12 76324891 to 76334153 9262 + protein coding gene A kinase (PRKA) anchor protein 5
Tssr113949 12 76324910 to 76324932 22 + TSS region transcription start site region 113949
Tssr113950 12 76328929 to 76328945 16 + TSS region transcription start site region 113950
Tssr113951 12 76329057 to 76329070 13 + TSS region transcription start site region 113951
Tssr113952 12 76329274 to 76329283 9 + TSS region transcription start site region 113952
Tssr113953 12 76332405 to 76332409 4 + TSS region transcription start site region 113953
A430103D13Rik 12 76344525 to 76345381 856 - unclassified gene RIKEN cDNA A430103D13 gene
Zbtb25 12 76348900 to 76370216 21316 - protein coding gene zinc finger and BTB domain containing 25
Tssr113954 12 76367315 to 76367326 11 + TSS region transcription start site region 113954
Tssr113955 12 76367329 to 76367339 10 + TSS region transcription start site region 113955
Tssr113956 12 76367343 to 76367354 11 + TSS region transcription start site region 113956
Cpgi4779 12 76368967 to 76371706 2739 CpG island CpG island 4779
Tssr116716 12 76369154 to 76369167 13 - TSS region transcription start site region 116716
Tssr116717 12 76369171 to 76369181 10 - TSS region transcription start site region 116717
Tssr116718 12 76369385 to 76369469 84 - TSS region transcription start site region 116718
Tssr116719 12 76369474 to 76369517 43 - TSS region transcription start site region 116719
Tssr116720 12 76369520 to 76369585 65 - TSS region transcription start site region 116720
Tssr116721 12 76369586 to 76369598 12 - TSS region transcription start site region 116721
Tssr116722 12 76369673 to 76369684 11 - TSS region transcription start site region 116722
Tssr116723 12 76369691 to 76369698 7 - TSS region transcription start site region 116723
Tssr116724 12 76369731 to 76369765 34 - TSS region transcription start site region 116724
Tssr116725 12 76369820 to 76369829 9 - TSS region transcription start site region 116725
Zbtb1 12 76370266 to 76396950 26684 + protein coding gene zinc finger and BTB domain containing 1
Tssr116726 12 76370347 to 76370353 6 - TSS region transcription start site region 116726
Tssr116727 12 76370375 to 76370394 19 - TSS region transcription start site region 116727
Tssr113957 12 76370476 to 76370508 32 + TSS region transcription start site region 113957
Tssr113958 12 76370513 to 76370528 15 + TSS region transcription start site region 113958
Tssr113959 12 76370537 to 76370620 83 + TSS region transcription start site region 113959
Tssr116728 12 76370950 to 76370977 27 - TSS region transcription start site region 116728
Tssr113960 12 76371127 to 76371140 13 + TSS region transcription start site region 113960
Tssr116729 12 76371424 to 76371441 17 - TSS region transcription start site region 116729
4930426I24Rik 12 76402751 to 76403982 1231 - lincRNA gene RIKEN cDNA 4930426I24 gene
Cpgi4780 12 76403278 to 76406348 3070 CpG island CpG island 4780
Tssr113961 12 76403911 to 76403922 11 + TSS region transcription start site region 113961
Tssr113962 12 76404168 to 76404264 96 + TSS region transcription start site region 113962
Hspa2 12 76404176 to 76406938 2762 + protein coding gene heat shock protein 2
Tssr113963 12 76404278 to 76404289 11 + TSS region transcription start site region 113963
Tssr113964 12 76404385 to 76404396 11 + TSS region transcription start site region 113964
Tssr113965 12 76404404 to 76404426 22 + TSS region transcription start site region 113965
Tssr113966 12 76404479 to 76404482 3 + TSS region transcription start site region 113966
Tssr113967 12 76404524 to 76404529 5 + TSS region transcription start site region 113967
Tssr113968 12 76405552 to 76405563 11 + TSS region transcription start site region 113968
Tssr113969 12 76406102 to 76406116 14 + TSS region transcription start site region 113969
Tssr113970 12 76406448 to 76406457 9 + TSS region transcription start site region 113970
Tssr113971 12 76406499 to 76406509 10 + TSS region transcription start site region 113971
Cpgi4781 12 76417477 to 76417999 522 CpG island CpG island 4781
Tssr113972 12 76417516 to 76417543 27 + TSS region transcription start site region 113972
Tssr113973 12 76417551 to 76417585 34 + TSS region transcription start site region 113973
Tssr113974 12 76417598 to 76417641 43 + TSS region transcription start site region 113974
Ppp1r36 12 76417599 to 76439492 21893 + protein coding gene protein phosphatase 1, regulatory subunit 36
Gm25563 12 76420417 to 76420490 73 - snRNA gene predicted gene, 25563
Cpgi4782 12 76435109 to 76435322 213 CpG island CpG island 4782
Gm10451 12 76444497 to 76448698 4201 + lincRNA gene predicted gene 10451
Tssr116730 12 76474085 to 76474091 6 - TSS region transcription start site region 116730
Gm47053 12 76492355 to 76492511 156 + pseudogene predicted gene, 47053
Tssr113975 12 76497975 to 76497979 4 + TSS region transcription start site region 113975
Gm40445 12 76523491 to 76528269 4778 + lncRNA gene predicted gene, 40445
Cpgi4783 12 76532879 to 76534258 1379 CpG island CpG island 4783
Mir5135 12 76533134 to 76533212 78 - miRNA gene microRNA 5135
Plekhg3 12 76533246 to 76580489 47243 + protein coding gene pleckstrin homology domain containing, family G (with RhoGef domain) member 3
Tssr113976 12 76533540 to 76533597 57 + TSS region transcription start site region 113976
Tssr113977 12 76533613 to 76533625 12 + TSS region transcription start site region 113977
Tssr113978 12 76533631 to 76533646 15 + TSS region transcription start site region 113978
6330522J23Rik 12 76534213 to 76535366 1153 unclassified gene RIKEN cDNA 6330522J23 gene