Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:76123491-76928269

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184 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Esr2 12 76120419 to 76177259 56840 - protein coding gene estrogen receptor 2 (beta)
D12Mit286 12 76135343 to 76135425 82 DNA segment DNA Segment, Chr 12, Massachusetts Institute of Technology 286
Gm7862 12 76152336 to 76152627 291 - pseudogene predicted gene 7862
Cpgi4774 12 76152495 to 76152850 355 CpG island CpG island 4774
Cpgi4775 12 76176926 to 76177430 504 CpG island CpG island 4775
Tssr116703 12 76177061 to 76177071 10 - TSS region transcription start site region 116703
Tssr116704 12 76177251 to 76177265 14 - TSS region transcription start site region 116704
Cpgi4776 12 76196092 to 76196326 234 CpG island CpG island 4776
Tex21 12 76198686 to 76246746 48060 - protein coding gene testis expressed gene 21
Tssr113932 12 76215371 to 76215382 11 + TSS region transcription start site region 113932
Tssr113933 12 76215442 to 76215451 9 + TSS region transcription start site region 113933
Tssr116705 12 76216863 to 76216872 9 - TSS region transcription start site region 116705
Tssr116706 12 76216875 to 76216897 22 - TSS region transcription start site region 116706
Tssr116707 12 76216947 to 76216985 38 - TSS region transcription start site region 116707
Tssr116708 12 76222242 to 76222262 20 - TSS region transcription start site region 116708
Tssr116709 12 76229446 to 76229468 22 - TSS region transcription start site region 116709
Tssr116710 12 76246736 to 76246755 19 - TSS region transcription start site region 116710
Gm47525 12 76254562 to 76255334 772 - bidirectional promoter lncRNA gene predicted gene, 47525
Cpgi4777 12 76254887 to 76255667 780 CpG island CpG island 4777
Tssr116711 12 76255046 to 76255057 11 - TSS region transcription start site region 116711
Tssr116712 12 76255072 to 76255110 38 - TSS region transcription start site region 116712
Tssr113934 12 76255209 to 76255239 30 + TSS region transcription start site region 113934
Tssr113935 12 76255244 to 76255257 13 + TSS region transcription start site region 113935
Tssr113936 12 76255290 to 76255307 17 + TSS region transcription start site region 113936
Mthfd1 12 76255298 to 76319803 64505 + protein coding gene methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase
Tssr113937 12 76255332 to 76255337 5 + TSS region transcription start site region 113937
Tssr113938 12 76255348 to 76255369 21 + TSS region transcription start site region 113938
Tssr113939 12 76255371 to 76255436 65 + TSS region transcription start site region 113939
Tssr113940 12 76255453 to 76255472 19 + TSS region transcription start site region 113940
Tssr113941 12 76255483 to 76255494 11 + TSS region transcription start site region 113941
Tssr116713 12 76264884 to 76264885 1 - TSS region transcription start site region 116713
Gm40444 12 76273241 to 76274264 1023 - lncRNA gene predicted gene, 40444
Tssr116714 12 76274215 to 76274245 30 - TSS region transcription start site region 116714
Gm47526 12 76277386 to 76277716 330 - pseudogene predicted gene, 47526
Gm34868 12 76286882 to 76300303 13421 - antisense lncRNA gene predicted gene, 34868
Tssr113942 12 76294137 to 76294183 46 + TSS region transcription start site region 113942
Tssr116715 12 76306964 to 76307007 43 - TSS region transcription start site region 116715
Tssr113943 12 76307062 to 76307074 12 + TSS region transcription start site region 113943
Tssr113944 12 76307099 to 76307111 12 + TSS region transcription start site region 113944
Tssr113945 12 76307143 to 76307157 14 + TSS region transcription start site region 113945
Gm40443 12 76309841 to 76323169 13328 - lncRNA gene predicted gene, 40443
Tssr113946 12 76319057 to 76319061 4 + TSS region transcription start site region 113946
Cpgi4778 12 76324613 to 76325299 686 CpG island CpG island 4778
Tssr113947 12 76324838 to 76324841 3 + TSS region transcription start site region 113947
Tssr113948 12 76324860 to 76324898 38 + TSS region transcription start site region 113948
Akap5 12 76324891 to 76334153 9262 + protein coding gene A kinase (PRKA) anchor protein 5
Tssr113949 12 76324910 to 76324932 22 + TSS region transcription start site region 113949
Tssr113950 12 76328929 to 76328945 16 + TSS region transcription start site region 113950
Tssr113951 12 76329057 to 76329070 13 + TSS region transcription start site region 113951
Tssr113952 12 76329274 to 76329283 9 + TSS region transcription start site region 113952
Tssr113953 12 76332405 to 76332409 4 + TSS region transcription start site region 113953
A430103D13Rik 12 76344525 to 76345381 856 - unclassified gene RIKEN cDNA A430103D13 gene
Zbtb25 12 76348900 to 76370216 21316 - protein coding gene zinc finger and BTB domain containing 25
Tssr113954 12 76367315 to 76367326 11 + TSS region transcription start site region 113954
Tssr113955 12 76367329 to 76367339 10 + TSS region transcription start site region 113955
Tssr113956 12 76367343 to 76367354 11 + TSS region transcription start site region 113956
Cpgi4779 12 76368967 to 76371706 2739 CpG island CpG island 4779
Tssr116716 12 76369154 to 76369167 13 - TSS region transcription start site region 116716
Tssr116717 12 76369171 to 76369181 10 - TSS region transcription start site region 116717
Tssr116718 12 76369385 to 76369469 84 - TSS region transcription start site region 116718
Tssr116719 12 76369474 to 76369517 43 - TSS region transcription start site region 116719
Tssr116720 12 76369520 to 76369585 65 - TSS region transcription start site region 116720
Tssr116721 12 76369586 to 76369598 12 - TSS region transcription start site region 116721
Tssr116722 12 76369673 to 76369684 11 - TSS region transcription start site region 116722
Tssr116723 12 76369691 to 76369698 7 - TSS region transcription start site region 116723
Tssr116724 12 76369731 to 76369765 34 - TSS region transcription start site region 116724
Tssr116725 12 76369820 to 76369829 9 - TSS region transcription start site region 116725
Zbtb1 12 76370266 to 76396950 26684 + protein coding gene zinc finger and BTB domain containing 1
Tssr116726 12 76370347 to 76370353 6 - TSS region transcription start site region 116726
Tssr116727 12 76370375 to 76370394 19 - TSS region transcription start site region 116727
Tssr113957 12 76370476 to 76370508 32 + TSS region transcription start site region 113957
Tssr113958 12 76370513 to 76370528 15 + TSS region transcription start site region 113958
Tssr113959 12 76370537 to 76370620 83 + TSS region transcription start site region 113959
Tssr116728 12 76370950 to 76370977 27 - TSS region transcription start site region 116728
Tssr113960 12 76371127 to 76371140 13 + TSS region transcription start site region 113960
Tssr116729 12 76371424 to 76371441 17 - TSS region transcription start site region 116729
4930426I24Rik 12 76402751 to 76403982 1231 - lincRNA gene RIKEN cDNA 4930426I24 gene
Cpgi4780 12 76403278 to 76406348 3070 CpG island CpG island 4780
Tssr113961 12 76403911 to 76403922 11 + TSS region transcription start site region 113961
Tssr113962 12 76404168 to 76404264 96 + TSS region transcription start site region 113962
Hspa2 12 76404176 to 76406938 2762 + protein coding gene heat shock protein 2
Tssr113963 12 76404278 to 76404289 11 + TSS region transcription start site region 113963
Tssr113964 12 76404385 to 76404396 11 + TSS region transcription start site region 113964
Tssr113965 12 76404404 to 76404426 22 + TSS region transcription start site region 113965
Tssr113966 12 76404479 to 76404482 3 + TSS region transcription start site region 113966
Tssr113967 12 76404524 to 76404529 5 + TSS region transcription start site region 113967
Tssr113968 12 76405552 to 76405563 11 + TSS region transcription start site region 113968
Tssr113969 12 76406102 to 76406116 14 + TSS region transcription start site region 113969
Tssr113970 12 76406448 to 76406457 9 + TSS region transcription start site region 113970
Tssr113971 12 76406499 to 76406509 10 + TSS region transcription start site region 113971
Cpgi4781 12 76417477 to 76417999 522 CpG island CpG island 4781
Tssr113972 12 76417516 to 76417543 27 + TSS region transcription start site region 113972
Tssr113973 12 76417551 to 76417585 34 + TSS region transcription start site region 113973
Tssr113974 12 76417598 to 76417641 43 + TSS region transcription start site region 113974
Ppp1r36 12 76417599 to 76439492 21893 + protein coding gene protein phosphatase 1, regulatory subunit 36
Gm25563 12 76420417 to 76420490 73 - snRNA gene predicted gene, 25563
Cpgi4782 12 76435109 to 76435322 213 CpG island CpG island 4782
Gm10451 12 76444497 to 76448698 4201 + lincRNA gene predicted gene 10451
Tssr116730 12 76474085 to 76474091 6 - TSS region transcription start site region 116730
Gm47053 12 76492355 to 76492511 156 + pseudogene predicted gene, 47053
Tssr113975 12 76497975 to 76497979 4 + TSS region transcription start site region 113975
Gm40445 12 76523491 to 76528269 4778 + lncRNA gene predicted gene, 40445
Cpgi4783 12 76532879 to 76534258 1379 CpG island CpG island 4783
Mir5135 12 76533134 to 76533212 78 - miRNA gene microRNA 5135
Plekhg3 12 76533246 to 76580489 47243 + protein coding gene pleckstrin homology domain containing, family G (with RhoGef domain) member 3
Tssr113976 12 76533540 to 76533597 57 + TSS region transcription start site region 113976
Tssr113977 12 76533613 to 76533625 12 + TSS region transcription start site region 113977
Tssr113978 12 76533631 to 76533646 15 + TSS region transcription start site region 113978
6330522J23Rik 12 76534213 to 76535366 1153 unclassified gene RIKEN cDNA 6330522J23 gene
AI463170 12 76546972 to 76547925 953 - antisense lncRNA gene expressed sequence AI463170
Tssr113979 12 76547076 to 76547088 12 + TSS region transcription start site region 113979
Tssr116731 12 76547848 to 76547874 26 - TSS region transcription start site region 116731
Tssr113980 12 76571523 to 76571539 16 + TSS region transcription start site region 113980
Tssr113981 12 76571544 to 76571567 23 + TSS region transcription start site region 113981
Tssr113982 12 76573104 to 76573115 11 + TSS region transcription start site region 113982
Sptb 12 76580488 to 76710547 130059 - protein coding gene spectrin beta, erythrocytic
Tssr116732 12 76596701 to 76596722 21 - TSS region transcription start site region 116732
Tssr116733 12 76597400 to 76597412 12 - TSS region transcription start site region 116733
Tssr116734 12 76597590 to 76597619 29 - TSS region transcription start site region 116734
Tssr116735 12 76609411 to 76609417 6 - TSS region transcription start site region 116735
Tssr116736 12 76612647 to 76612660 13 - TSS region transcription start site region 116736
Tssr116737 12 76612662 to 76612669 7 - TSS region transcription start site region 116737
Tssr116738 12 76612678 to 76612701 23 - TSS region transcription start site region 116738
Tssr116739 12 76612708 to 76612728 20 - TSS region transcription start site region 116739
Tssr116740 12 76643728 to 76643743 15 - TSS region transcription start site region 116740
Tssr116741 12 76643763 to 76643775 12 - TSS region transcription start site region 116741
Tssr116742 12 76643819 to 76643835 16 - TSS region transcription start site region 116742
Tssr116743 12 76643919 to 76643922 3 - TSS region transcription start site region 116743
Tssr116744 12 76668696 to 76668709 13 - TSS region transcription start site region 116744
Tssr113983 12 76676296 to 76676301 5 + TSS region transcription start site region 113983
Cpgi4784 12 76676515 to 76676673 158 CpG island CpG island 4784
Gm24010 12 76691980 to 76692261 281 + unclassified non-coding RNA gene predicted gene, 24010
Cpgi4785 12 76709332 to 76711018 1686 CpG island CpG island 4785
Tssr116745 12 76709955 to 76709995 40 - TSS region transcription start site region 116745
Tssr116746 12 76709997 to 76710026 29 - TSS region transcription start site region 116746
Tssr116747 12 76710029 to 76710054 25 - TSS region transcription start site region 116747
Tssr116748 12 76710077 to 76710088 11 - TSS region transcription start site region 116748
Tssr116749 12 76710095 to 76710107 12 - TSS region transcription start site region 116749
Tssr116750 12 76710120 to 76710153 33 - TSS region transcription start site region 116750
Tssr113984 12 76742675 to 76742678 3 + TSS region transcription start site region 113984
Cpgi4786 12 76765409 to 76766094 685 CpG island CpG island 4786
Tssr113985 12 76765527 to 76765584 57 + TSS region transcription start site region 113985
Churc1 12 76765573 to 76783180 17607 + protein coding gene churchill domain containing 1
Tssr113986 12 76765843 to 76765857 14 + TSS region transcription start site region 113986
Tssr113987 12 76773775 to 76773779 4 + TSS region transcription start site region 113987
Tssr113988 12 76775129 to 76775141 12 + TSS region transcription start site region 113988
Tssr113989 12 76782272 to 76782276 4 + TSS region transcription start site region 113989
Gpx2 12 76792335 to 76795554 3219 - protein coding gene glutathione peroxidase 2
Tssr113990 12 76792761 to 76792788 27 + TSS region transcription start site region 113990
Tssr116751 12 76795316 to 76795355 39 - TSS region transcription start site region 116751
Tssr116752 12 76795425 to 76795464 39 - TSS region transcription start site region 116752
Tssr116753 12 76795471 to 76795478 7 - TSS region transcription start site region 116753
Tssr116754 12 76795489 to 76795521 32 - TSS region transcription start site region 116754
Tssr3866 12 76795549 to 76795552 3 - TSS region transcription start site region 3866
Rab15 12 76797960 to 76822763 24803 - protein coding gene RAB15, member RAS oncogene family
Gm34988 12 76818317 to 76818794 477 + lncRNA gene predicted gene, 34988
Tssr116755 12 76818389 to 76818395 6 - TSS region transcription start site region 116755
Cpgi4787 12 76821926 to 76823078 1152 CpG island CpG island 4787
Tssr116756 12 76822386 to 76822414 28 - TSS region transcription start site region 116756
Tssr116757 12 76822420 to 76822431 11 - TSS region transcription start site region 116757
Tssr116758 12 76822465 to 76822508 43 - TSS region transcription start site region 116758
Tssr116759 12 76822510 to 76822558 48 - TSS region transcription start site region 116759
Tssr116760 12 76822736 to 76822757 21 - TSS region transcription start site region 116760
Cpgi4788 12 76837208 to 76838092 884 CpG island CpG island 4788
Fntb 12 76837391 to 76921412 84021 + protein coding gene farnesyltransferase, CAAX box, beta
Tssr113991 12 76837408 to 76837466 58 + TSS region transcription start site region 113991
Tssr113992 12 76837469 to 76837480 11 + TSS region transcription start site region 113992
Gm46357 12 76858709 to 76869172 10463 - lncRNA gene predicted gene, 46357
Tssr113993 12 76887045 to 76887083 38 + TSS region transcription start site region 113993
Gm46358 12 76896781 to 76910279 13498 - lncRNA gene predicted gene, 46358
Tssr113994 12 76896813 to 76896814 1 + TSS region transcription start site region 113994
Tssr113995 12 76902144 to 76902155 11 + TSS region transcription start site region 113995
Tssr113996 12 76902170 to 76902182 12 + TSS region transcription start site region 113996
Tssr113997 12 76902187 to 76902201 14 + TSS region transcription start site region 113997
Tssr113998 12 76902207 to 76902231 24 + TSS region transcription start site region 113998
Tssr113999 12 76909442 to 76909456 14 + TSS region transcription start site region 113999
Tssr114000 12 76909483 to 76909496 13 + TSS region transcription start site region 114000
Tssr114001 12 76909501 to 76909511 10 + TSS region transcription start site region 114001
Tssr3867 12 76909514 to 76909519 5 + TSS region transcription start site region 3867
Tssr3868 12 76910381 to 76910393 12 - TSS region transcription start site region 3868
Tssr116761 12 76910462 to 76910499 37 - TSS region transcription start site region 116761
Tssr114002 12 76914636 to 76914655 19 + TSS region transcription start site region 114002
Tssr114003 12 76916417 to 76916442 25 + TSS region transcription start site region 114003
Tssr114004 12 76920744 to 76920757 13 + TSS region transcription start site region 114004