Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:75844566-76314569

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66 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Syne2 12 75818318 to 76110928 292610 + protein coding gene spectrin repeat containing, nuclear envelope 2
Tssr113916 12 75853848 to 75853892 44 + TSS region transcription start site region 113916
Tssr113917 12 75880119 to 75880152 33 + TSS region transcription start site region 113917
Mir5101 12 75909103 to 75909185 82 + miRNA gene microRNA 5101
Tssr116702 12 75928925 to 75928927 2 - TSS region transcription start site region 116702
Tssr113918 12 75960384 to 75960398 14 + TSS region transcription start site region 113918
D12Mit252 12 75976038 to 75976122 84 DNA segment DNA Segment, Chr 12, Massachusetts Institute of Technology 252
D12Mit3 12 75980519 to 75980640 121 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 3
Tssr113919 12 75983668 to 75983680 12 + TSS region transcription start site region 113919
Tssr113920 12 75983691 to 75983696 5 + TSS region transcription start site region 113920
Tssr113921 12 75983888 to 75983898 10 + TSS region transcription start site region 113921
Tssr113922 12 76005209 to 76005249 40 + TSS region transcription start site region 113922
D12Mit192 12 76048091 to 76048206 115 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 192
Tssr113923 12 76049689 to 76049694 5 + TSS region transcription start site region 113923
D12Mit128 12 76051661 to 76051774 113 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 128
Tssr113924 12 76072029 to 76072079 50 + TSS region transcription start site region 113924
Tssr113925 12 76072171 to 76072178 7 + TSS region transcription start site region 113925
Tssr3865 12 76072235 to 76072245 10 + TSS region transcription start site region 3865
Tssr113926 12 76079566 to 76079569 3 + TSS region transcription start site region 113926
Tssr113927 12 76081645 to 76081661 16 + TSS region transcription start site region 113927
Tssr113928 12 76086719 to 76086749 30 + TSS region transcription start site region 113928
Tssr113929 12 76086863 to 76086878 15 + TSS region transcription start site region 113929
Tssr113930 12 76104839 to 76104864 25 + TSS region transcription start site region 113930
Tssr113931 12 76111358 to 76111361 3 + TSS region transcription start site region 113931
D12Ertd673e 12 76118589 to 76118816 227 DNA segment DNA segment, Chr 12, ERATO Doi 673, expressed
Esr2 12 76120419 to 76177259 56840 - protein coding gene estrogen receptor 2 (beta)
D12Mit286 12 76135343 to 76135425 82 DNA segment DNA Segment, Chr 12, Massachusetts Institute of Technology 286
Gm7862 12 76152336 to 76152627 291 - pseudogene predicted gene 7862
Cpgi4774 12 76152495 to 76152850 355 CpG island CpG island 4774
Cpgi4775 12 76176926 to 76177430 504 CpG island CpG island 4775
Tssr116703 12 76177061 to 76177071 10 - TSS region transcription start site region 116703
Tssr116704 12 76177251 to 76177265 14 - TSS region transcription start site region 116704
Cpgi4776 12 76196092 to 76196326 234 CpG island CpG island 4776
Tex21 12 76198686 to 76246746 48060 - protein coding gene testis expressed gene 21
Tssr113932 12 76215371 to 76215382 11 + TSS region transcription start site region 113932
Tssr113933 12 76215442 to 76215451 9 + TSS region transcription start site region 113933
Tssr116705 12 76216863 to 76216872 9 - TSS region transcription start site region 116705
Tssr116706 12 76216875 to 76216897 22 - TSS region transcription start site region 116706
Tssr116707 12 76216947 to 76216985 38 - TSS region transcription start site region 116707
Tssr116708 12 76222242 to 76222262 20 - TSS region transcription start site region 116708
Tssr116709 12 76229446 to 76229468 22 - TSS region transcription start site region 116709
Tssr116710 12 76246736 to 76246755 19 - TSS region transcription start site region 116710
Gm47525 12 76254562 to 76255334 772 - bidirectional promoter lncRNA gene predicted gene, 47525
Cpgi4777 12 76254887 to 76255667 780 CpG island CpG island 4777
Tssr116711 12 76255046 to 76255057 11 - TSS region transcription start site region 116711
Tssr116712 12 76255072 to 76255110 38 - TSS region transcription start site region 116712
Tssr113934 12 76255209 to 76255239 30 + TSS region transcription start site region 113934
Tssr113935 12 76255244 to 76255257 13 + TSS region transcription start site region 113935
Tssr113936 12 76255290 to 76255307 17 + TSS region transcription start site region 113936
Mthfd1 12 76255298 to 76319803 64505 + protein coding gene methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase
Tssr113937 12 76255332 to 76255337 5 + TSS region transcription start site region 113937
Tssr113938 12 76255348 to 76255369 21 + TSS region transcription start site region 113938
Tssr113939 12 76255371 to 76255436 65 + TSS region transcription start site region 113939
Tssr113940 12 76255453 to 76255472 19 + TSS region transcription start site region 113940
Tssr113941 12 76255483 to 76255494 11 + TSS region transcription start site region 113941
Tssr116713 12 76264884 to 76264885 1 - TSS region transcription start site region 116713
Gm40444 12 76273241 to 76274264 1023 - lncRNA gene predicted gene, 40444
Tssr116714 12 76274215 to 76274245 30 - TSS region transcription start site region 116714
Gm47526 12 76277386 to 76277716 330 - pseudogene predicted gene, 47526
Gm34868 12 76286882 to 76300303 13421 - antisense lncRNA gene predicted gene, 34868
Tssr113942 12 76294137 to 76294183 46 + TSS region transcription start site region 113942
Tssr116715 12 76306964 to 76307007 43 - TSS region transcription start site region 116715
Tssr113943 12 76307062 to 76307074 12 + TSS region transcription start site region 113943
Tssr113944 12 76307099 to 76307111 12 + TSS region transcription start site region 113944
Tssr113945 12 76307143 to 76307157 14 + TSS region transcription start site region 113945
Gm40443 12 76309841 to 76323169 13328 - lncRNA gene predicted gene, 40443