Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:75185633-76285712

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131 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D12Mit175 12 75187876 to 75188016 140 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 175
Tssr113896 12 75220339 to 75220341 2 + TSS region transcription start site region 113896
Tssr116678 12 75221387 to 75221388 1 - TSS region transcription start site region 116678
D12Mit287 12 75249564 to 75249686 122 DNA segment DNA Segment, Chr 12, Massachusetts Institute of Technology 287
Tssr113897 12 75277715 to 75277723 8 + TSS region transcription start site region 113897
Tssr113898 12 75308062 to 75308079 17 + TSS region transcription start site region 113898
Tssr113899 12 75308308 to 75308317 9 + TSS region transcription start site region 113899
Rhoj 12 75308322 to 75401456 93134 + protein coding gene ras homolog family member J
Tssr113900 12 75308339 to 75308358 19 + TSS region transcription start site region 113900
Tssr113901 12 75308387 to 75308408 21 + TSS region transcription start site region 113901
Tssr113902 12 75308416 to 75308434 18 + TSS region transcription start site region 113902
Tssr113903 12 75308439 to 75308450 11 + TSS region transcription start site region 113903
Tssr113904 12 75308526 to 75308544 18 + TSS region transcription start site region 113904
Tssr3862 12 75308548 to 75308562 14 + TSS region transcription start site region 3862
Tssr113905 12 75308595 to 75308606 11 + TSS region transcription start site region 113905
Tssr113906 12 75308627 to 75308634 7 + TSS region transcription start site region 113906
Tssr113907 12 75308652 to 75308671 19 + TSS region transcription start site region 113907
Cpgi4768 12 75308676 to 75309158 482 CpG island CpG island 4768
C230007H23Rik 12 75337902 to 75342120 4218 unclassified gene RIKEN cDNA C230007H23 gene
Tssr113908 12 75394001 to 75394031 30 + TSS region transcription start site region 113908
Tssr116679 12 75400224 to 75400234 10 - TSS region transcription start site region 116679
Gphb5 12 75411722 to 75416781 5059 - protein coding gene glycoprotein hormone beta 5
Gm34613 12 75416091 to 75422808 6717 + lncRNA gene predicted gene, 34613
Ppp2r5e 12 75450881 to 75596245 145364 - protein coding gene protein phosphatase 2, regulatory subunit B', epsilon
Tssr116680 12 75483368 to 75483372 4 - TSS region transcription start site region 116680
Gm47690 12 75505800 to 75508745 2945 - unclassified gene predicted gene, 47690
Tssr3863 12 75521510 to 75521513 3 + TSS region transcription start site region 3863
Tssr3864 12 75529262 to 75529265 3 + TSS region transcription start site region 3864
D12Mit226 12 75537627 to 75537747 120 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 226
Tssr116681 12 75549636 to 75549640 4 - TSS region transcription start site region 116681
Tssr116682 12 75549643 to 75549661 18 - TSS region transcription start site region 116682
Tssr116683 12 75549668 to 75549695 27 - TSS region transcription start site region 116683
D12Mit129 12 75558803 to 75558903 100 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 129
Gm47689 12 75579865 to 75581699 1834 + antisense lncRNA gene predicted gene, 47689
Tssr116684 12 75583432 to 75583436 4 - TSS region transcription start site region 116684
Tssr116685 12 75589542 to 75589544 2 - TSS region transcription start site region 116685
Tssr113909 12 75591357 to 75591363 6 + TSS region transcription start site region 113909
Cpgi4769 12 75595343 to 75596947 1604 CpG island CpG island 4769
Tssr116686 12 75596108 to 75596113 5 - TSS region transcription start site region 116686
Tssr116687 12 75596163 to 75596176 13 - TSS region transcription start site region 116687
Tssr116688 12 75596180 to 75596194 14 - TSS region transcription start site region 116688
Tssr116689 12 75596195 to 75596261 66 - TSS region transcription start site region 116689
Tssr113910 12 75596458 to 75596489 31 + TSS region transcription start site region 113910
Tssr116690 12 75599332 to 75599333 1 - TSS region transcription start site region 116690
Gm34666 12 75609978 to 75616626 6648 - lncRNA gene predicted gene, 34666
Wdr89 12 75630596 to 75669537 38941 - protein coding gene WD repeat domain 89
Rplp2-ps1 12 75630918 to 75631749 831 - pseudogene ribosomal protein, large P2, pseudogene 1
Cpgi4770 12 75631189 to 75631379 190 CpG island CpG island 4770
Tssr116691 12 75631200 to 75631228 28 - TSS region transcription start site region 116691
Tssr116692 12 75631327 to 75631360 33 - TSS region transcription start site region 116692
Tssr116693 12 75631371 to 75631380 9 - TSS region transcription start site region 116693
Cpgi4771 12 75669146 to 75670071 925 CpG island CpG island 4771
Tssr116694 12 75669496 to 75669544 48 - TSS region transcription start site region 116694
Gm34717 12 75669725 to 75688264 18539 + lncRNA gene predicted gene, 34717
Tssr113911 12 75669813 to 75669830 17 + TSS region transcription start site region 113911
Tssr113912 12 75669835 to 75669878 43 + TSS region transcription start site region 113912
Gm40890 12 75701908 to 75712313 10405 + lncRNA gene predicted gene, 40890
Sgpp1 12 75714249 to 75735729 21480 - protein coding gene sphingosine-1-phosphate phosphatase 1
Tssr116695 12 75716412 to 75716424 12 - TSS region transcription start site region 116695
Tssr116696 12 75722714 to 75722729 15 - TSS region transcription start site region 116696
Cpgi4772 12 75734804 to 75736077 1273 CpG island CpG island 4772
Tssr116697 12 75735633 to 75735712 79 - TSS region transcription start site region 116697
Tssr116698 12 75735729 to 75735736 7 - TSS region transcription start site region 116698
Tssr116699 12 75735828 to 75735831 3 - TSS region transcription start site region 116699
Tssr116700 12 75745775 to 75745782 7 - TSS region transcription start site region 116700
Gm40447 12 75745779 to 75819628 73849 - protein coding gene predicted gene, 40447
Tssr113913 12 75750072 to 75750117 45 + TSS region transcription start site region 113913
Cpgi4773 12 75817914 to 75819458 1544 CpG island CpG island 4773
Tssr116701 12 75818181 to 75818225 44 - TSS region transcription start site region 116701
Tssr113914 12 75818294 to 75818356 62 + TSS region transcription start site region 113914
Syne2 12 75818318 to 76110928 292610 + protein coding gene spectrin repeat containing, nuclear envelope 2
Tssr113915 12 75818376 to 75818385 9 + TSS region transcription start site region 113915
A930027M08Rik 12 75820285 to 75820751 466 unclassified gene RIKEN cDNA A930027M08 gene
Tssr113916 12 75853848 to 75853892 44 + TSS region transcription start site region 113916
Tssr113917 12 75880119 to 75880152 33 + TSS region transcription start site region 113917
Mir5101 12 75909103 to 75909185 82 + miRNA gene microRNA 5101
Tssr116702 12 75928925 to 75928927 2 - TSS region transcription start site region 116702
Tssr113918 12 75960384 to 75960398 14 + TSS region transcription start site region 113918
D12Mit252 12 75976038 to 75976122 84 DNA segment DNA Segment, Chr 12, Massachusetts Institute of Technology 252
D12Mit3 12 75980519 to 75980640 121 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 3
Tssr113919 12 75983668 to 75983680 12 + TSS region transcription start site region 113919
Tssr113920 12 75983691 to 75983696 5 + TSS region transcription start site region 113920
Tssr113921 12 75983888 to 75983898 10 + TSS region transcription start site region 113921
Tssr113922 12 76005209 to 76005249 40 + TSS region transcription start site region 113922
D12Mit192 12 76048091 to 76048206 115 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 192
Tssr113923 12 76049689 to 76049694 5 + TSS region transcription start site region 113923
D12Mit128 12 76051661 to 76051774 113 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 128
Tssr113924 12 76072029 to 76072079 50 + TSS region transcription start site region 113924
Tssr113925 12 76072171 to 76072178 7 + TSS region transcription start site region 113925
Tssr3865 12 76072235 to 76072245 10 + TSS region transcription start site region 3865
Tssr113926 12 76079566 to 76079569 3 + TSS region transcription start site region 113926
Tssr113927 12 76081645 to 76081661 16 + TSS region transcription start site region 113927
Tssr113928 12 76086719 to 76086749 30 + TSS region transcription start site region 113928
Tssr113929 12 76086863 to 76086878 15 + TSS region transcription start site region 113929
Tssr113930 12 76104839 to 76104864 25 + TSS region transcription start site region 113930
Tssr113931 12 76111358 to 76111361 3 + TSS region transcription start site region 113931
D12Ertd673e 12 76118589 to 76118816 227 DNA segment DNA segment, Chr 12, ERATO Doi 673, expressed
Esr2 12 76120419 to 76177259 56840 - protein coding gene estrogen receptor 2 (beta)
D12Mit286 12 76135343 to 76135425 82 DNA segment DNA Segment, Chr 12, Massachusetts Institute of Technology 286
Gm7862 12 76152336 to 76152627 291 - pseudogene predicted gene 7862
Cpgi4774 12 76152495 to 76152850 355 CpG island CpG island 4774
Cpgi4775 12 76176926 to 76177430 504 CpG island CpG island 4775
Tssr116703 12 76177061 to 76177071 10 - TSS region transcription start site region 116703
Tssr116704 12 76177251 to 76177265 14 - TSS region transcription start site region 116704
Cpgi4776 12 76196092 to 76196326 234 CpG island CpG island 4776
Tex21 12 76198686 to 76246746 48060 - protein coding gene testis expressed gene 21
Tssr113932 12 76215371 to 76215382 11 + TSS region transcription start site region 113932
Tssr113933 12 76215442 to 76215451 9 + TSS region transcription start site region 113933
Tssr116705 12 76216863 to 76216872 9 - TSS region transcription start site region 116705
Tssr116706 12 76216875 to 76216897 22 - TSS region transcription start site region 116706
Tssr116707 12 76216947 to 76216985 38 - TSS region transcription start site region 116707
Tssr116708 12 76222242 to 76222262 20 - TSS region transcription start site region 116708
Tssr116709 12 76229446 to 76229468 22 - TSS region transcription start site region 116709
Tssr116710 12 76246736 to 76246755 19 - TSS region transcription start site region 116710
Gm47525 12 76254562 to 76255334 772 - bidirectional promoter lncRNA gene predicted gene, 47525
Cpgi4777 12 76254887 to 76255667 780 CpG island CpG island 4777
Tssr116711 12 76255046 to 76255057 11 - TSS region transcription start site region 116711
Tssr116712 12 76255072 to 76255110 38 - TSS region transcription start site region 116712
Tssr113934 12 76255209 to 76255239 30 + TSS region transcription start site region 113934
Tssr113935 12 76255244 to 76255257 13 + TSS region transcription start site region 113935
Tssr113936 12 76255290 to 76255307 17 + TSS region transcription start site region 113936
Mthfd1 12 76255298 to 76319803 64505 + protein coding gene methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase
Tssr113937 12 76255332 to 76255337 5 + TSS region transcription start site region 113937
Tssr113938 12 76255348 to 76255369 21 + TSS region transcription start site region 113938
Tssr113939 12 76255371 to 76255436 65 + TSS region transcription start site region 113939
Tssr113940 12 76255453 to 76255472 19 + TSS region transcription start site region 113940
Tssr113941 12 76255483 to 76255494 11 + TSS region transcription start site region 113941
Tssr116713 12 76264884 to 76264885 1 - TSS region transcription start site region 116713
Gm40444 12 76273241 to 76274264 1023 - lncRNA gene predicted gene, 40444
Tssr116714 12 76274215 to 76274245 30 - TSS region transcription start site region 116714
Gm47526 12 76277386 to 76277716 330 - pseudogene predicted gene, 47526