Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:73747074-74887118

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114 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Prkch 12 73584796 to 73778185 193389 + protein coding gene protein kinase C, eta
Tssr113827 12 73756011 to 73756042 31 + TSS region transcription start site region 113827
Tssr113828 12 73765691 to 73765692 1 + TSS region transcription start site region 113828
Gm34189 12 73773244 to 73782166 8922 - lncRNA gene predicted gene, 34189
Tssr113829 12 73777411 to 73777418 7 + TSS region transcription start site region 113829
Tssr113830 12 73779531 to 73779541 10 + TSS region transcription start site region 113830
Tssr116666 12 73779719 to 73779726 7 - TSS region transcription start site region 116666
Tssr116667 12 73781439 to 73781462 23 - TSS region transcription start site region 116667
Gm8075 12 73795643 to 73808411 12768 + lincRNA gene predicted gene 8075
Cpgi4759 12 73822417 to 73822625 208 CpG island CpG island 4759
Gm48823 12 73822587 to 73824554 1967 + lincRNA gene predicted gene, 48823
Gm3367 12 73843108 to 73869615 26507 unclassified non-coding RNA gene predicted gene 3367
Tssr113831 12 73867684 to 73867688 4 + TSS region transcription start site region 113831
D12Mit225 12 73868431 to 73868534 103 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 225
Tssr116668 12 73880473 to 73880477 4 - TSS region transcription start site region 116668
Cpgi4760 12 73885107 to 73885386 279 CpG island CpG island 4760
D12Mit212 12 73889423 to 73889549 126 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 212
D12Mit213 12 73889445 to 73889549 104 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 213
Tssr113832 12 73901319 to 73901324 5 + TSS region transcription start site region 113832
Tssr113833 12 73901348 to 73901365 17 + TSS region transcription start site region 113833
Tssr113834 12 73901370 to 73901391 21 + TSS region transcription start site region 113834
Hif1a 12 73901375 to 73947530 46155 + protein coding gene hypoxia inducible factor 1, alpha subunit
Tssr113835 12 73901402 to 73901419 17 + TSS region transcription start site region 113835
Tssr113836 12 73901435 to 73901442 7 + TSS region transcription start site region 113836
Tssr113837 12 73902638 to 73902641 3 + TSS region transcription start site region 113837
Cpgi4761 12 73907347 to 73909014 1667 CpG island CpG island 4761
Tssr113838 12 73907959 to 73907970 11 + TSS region transcription start site region 113838
Tssr113839 12 73907974 to 73908015 41 + TSS region transcription start site region 113839
Tssr113840 12 73908055 to 73908066 11 + TSS region transcription start site region 113840
Tssr113841 12 73908160 to 73908170 10 + TSS region transcription start site region 113841
Tssr113842 12 73908185 to 73908236 51 + TSS region transcription start site region 113842
Tssr113843 12 73908375 to 73908381 6 + TSS region transcription start site region 113843
Tssr113844 12 73909612 to 73909620 8 + TSS region transcription start site region 113844
Tssr113845 12 73910085 to 73910119 34 + TSS region transcription start site region 113845
Tssr113846 12 73913109 to 73913120 11 + TSS region transcription start site region 113846
Tssr113847 12 73913497 to 73913531 34 + TSS region transcription start site region 113847
Tssr113848 12 73919346 to 73919356 10 + TSS region transcription start site region 113848
Tssr113849 12 73923102 to 73923105 3 + TSS region transcription start site region 113849
Tssr113850 12 73923239 to 73923250 11 + TSS region transcription start site region 113850
Tssr113851 12 73927363 to 73927375 12 + TSS region transcription start site region 113851
Tssr113852 12 73927412 to 73927423 11 + TSS region transcription start site region 113852
Tssr113853 12 73928197 to 73928211 14 + TSS region transcription start site region 113853
Tssr113854 12 73930699 to 73930711 12 + TSS region transcription start site region 113854
Tssr113855 12 73931560 to 73931571 11 + TSS region transcription start site region 113855
Gm15283 12 73934724 to 73952524 17800 - antisense lncRNA gene predicted gene 15283
Tssr113856 12 73936200 to 73936223 23 + TSS region transcription start site region 113856
Snapc1l 12 73937653 to 73968375 30722 + protein coding gene small nuclear RNA activating complex, polypeptide 1 like
Tssr113857 12 73937659 to 73937671 12 + TSS region transcription start site region 113857
Tssr113858 12 73937716 to 73937732 16 + TSS region transcription start site region 113858
Tssr113859 12 73940544 to 73940574 30 + TSS region transcription start site region 113859
Tssr113860 12 73940583 to 73940595 12 + TSS region transcription start site region 113860
Tssr113861 12 73941696 to 73941738 42 + TSS region transcription start site region 113861
Tssr113862 12 73941754 to 73941782 28 + TSS region transcription start site region 113862
Tssr113863 12 73941790 to 73941809 19 + TSS region transcription start site region 113863
Tssr113864 12 73941824 to 73941831 7 + TSS region transcription start site region 113864
Tssr113865 12 73941969 to 73941996 27 + TSS region transcription start site region 113865
Tssr113866 12 73942048 to 73942065 17 + TSS region transcription start site region 113866
Tssr113867 12 73942255 to 73942266 11 + TSS region transcription start site region 113867
Tssr113868 12 73945660 to 73945674 14 + TSS region transcription start site region 113868
Tssr113869 12 73945683 to 73945716 33 + TSS region transcription start site region 113869
Tssr113870 12 73945762 to 73945786 24 + TSS region transcription start site region 113870
Tssr113871 12 73945787 to 73945807 20 + TSS region transcription start site region 113871
Tssr113872 12 73946030 to 73946048 18 + TSS region transcription start site region 113872
Tssr113873 12 73946283 to 73946300 17 + TSS region transcription start site region 113873
Tssr113874 12 73946311 to 73946328 17 + TSS region transcription start site region 113874
Cpgi4762 12 73949633 to 73950105 472 CpG island CpG island 4762
Tssr116669 12 73949779 to 73949828 49 - TSS region transcription start site region 116669
Tssr116670 12 73949831 to 73949852 21 - TSS region transcription start site region 116670
Tssr113875 12 73961082 to 73961088 6 + TSS region transcription start site region 113875
S100a11-ps 12 73961148 to 73961447 299 + pseudogene S100 calcium binding protein A11, pseudogene
Cpgi4763 12 73964292 to 73965102 810 CpG island CpG island 4763
Snapc1 12 73964477 to 73985830 21353 + protein coding gene small nuclear RNA activating complex, polypeptide 1
Tssr113876 12 73964481 to 73964542 61 + TSS region transcription start site region 113876
Tssr113877 12 73964544 to 73964563 19 + TSS region transcription start site region 113877
D12Mit33 12 73995685 to 73995827 142 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 33
Cpgi4764 12 73997345 to 73998414 1069 CpG island CpG island 4764
Syt16 12 73997610 to 74267916 270306 + protein coding gene synaptotagmin XVI
Tssr113878 12 73997736 to 73997744 8 + TSS region transcription start site region 113878
Tssr113879 12 73997749 to 73997817 68 + TSS region transcription start site region 113879
Tssr116671 12 74082100 to 74082115 15 - TSS region transcription start site region 116671
Tssr113880 12 74093216 to 74093225 9 + TSS region transcription start site region 113880
Tssr3860 12 74093325 to 74093330 5 + TSS region transcription start site region 3860
Gm40889 12 74140536 to 74146763 6227 + lncRNA gene predicted gene, 40889
Tssr113881 12 74208359 to 74208360 1 + TSS region transcription start site region 113881
Gm29587 12 74222498 to 74235140 12642 - antisense lncRNA gene predicted gene 29587
D12Dcr6 12 74233818 to 74233921 103 DNA segment DNA Segment, Chr 12, Derry C. Roopenian 6
Cpgi4765 12 74283850 to 74284748 898 CpG island CpG island 4765
Tssr113882 12 74284271 to 74284310 39 + TSS region transcription start site region 113882
1700086L19Rik 12 74284276 to 74295950 11674 + lincRNA gene RIKEN cDNA 1700086L19 gene
Tssr113883 12 74284318 to 74284330 12 + TSS region transcription start site region 113883
Tssr113884 12 74284348 to 74284353 5 + TSS region transcription start site region 113884
Tssr113885 12 74296692 to 74296697 5 + TSS region transcription start site region 113885
Tssr113886 12 74296858 to 74296861 3 + TSS region transcription start site region 113886
Dbpht2 12 74297474 to 74300468 2994 + lincRNA gene DNA binding protein with his-thr domain
Tssr113887 12 74298323 to 74298334 11 + TSS region transcription start site region 113887
Tssr113888 12 74298778 to 74298789 11 + TSS region transcription start site region 113888
Gm34552 12 74314201 to 74317162 2961 - lincRNA gene predicted gene, 34552
Gm11042 12 74315110 to 74316394 1284 - protein coding gene predicted gene 11042
Tssr116672 12 74317074 to 74317118 44 - TSS region transcription start site region 116672
Tssr113889 12 74346211 to 74346216 5 + TSS region transcription start site region 113889
Gm9544 12 74346340 to 74348821 2481 + pseudogene predicted gene 9544
Gm47618 12 74593652 to 74594100 448 - pseudogene predicted gene, 47618
Gm47619 12 74705246 to 74705728 482 - pseudogene predicted gene, 47619
Tssr113890 12 74803865 to 74803875 10 + TSS region transcription start site region 113890
Cpgi4766 12 74803933 to 74804502 569 CpG island CpG island 4766
Tssr116673 12 74803968 to 74803971 3 - TSS region transcription start site region 116673
Tssr113891 12 74804137 to 74804179 42 + TSS region transcription start site region 113891
Tssr113892 12 74804220 to 74804222 2 + TSS region transcription start site region 113892
Tssr113893 12 74804270 to 74804281 11 + TSS region transcription start site region 113893
Tssr113894 12 74804323 to 74804343 20 + TSS region transcription start site region 113894
Tssr113895 12 74804381 to 74804415 34 + TSS region transcription start site region 113895
Gm39473 12 74825300 to 74827351 2051 + lincRNA gene predicted gene, 39473
4930442G10Rik 12 74842738 to 74849666 6928 + lincRNA gene RIKEN cDNA 4930442G10 gene
D12Mit202 12 74865419 to 74865538 119 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 202