Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:73277142-73631907

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65 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Trmt5 12 73280011 to 73286710 6699 - protein coding gene TRM5 tRNA methyltransferase 5
Tssr116646 12 73284974 to 73284992 18 - TSS region transcription start site region 116646
Tssr116647 12 73284998 to 73285028 30 - TSS region transcription start site region 116647
Cpgi4755 12 73286401 to 73287224 823 CpG island CpG island 4755
Tssr116648 12 73286698 to 73286752 54 - TSS region transcription start site region 116648
Slc38a6 12 73286779 to 73354049 67270 + protein coding gene solute carrier family 38, member 6
Tssr113786 12 73286798 to 73286805 7 + TSS region transcription start site region 113786
Tssr113787 12 73286823 to 73286864 41 + TSS region transcription start site region 113787
Tssr113788 12 73286868 to 73286913 45 + TSS region transcription start site region 113788
Tssr116649 12 73287190 to 73287204 14 - TSS region transcription start site region 116649
Tssr116650 12 73324202 to 73324211 9 - TSS region transcription start site region 116650
Tssr116651 12 73325455 to 73325493 38 - TSS region transcription start site region 116651
Tssr113789 12 73336629 to 73336640 11 + TSS region transcription start site region 113789
Tssr113790 12 73336691 to 73336711 20 + TSS region transcription start site region 113790
Tssr113791 12 73336757 to 73336770 13 + TSS region transcription start site region 113791
Tssr113792 12 73336789 to 73336818 29 + TSS region transcription start site region 113792
Tssr113793 12 73352453 to 73352467 14 + TSS region transcription start site region 113793
Tssr113794 12 73353143 to 73353149 6 + TSS region transcription start site region 113794
Gm48653 12 73355081 to 73361997 6916 + lincRNA gene predicted gene, 48653
D830013O20Rik 12 73364075 to 73409557 45482 - lincRNA gene RIKEN cDNA D830013O20 gene
Gm40442 12 73402746 to 73406461 3715 + lncRNA gene predicted gene, 40442
Tssr116652 12 73409543 to 73409588 45 - TSS region transcription start site region 116652
Tssr116653 12 73409691 to 73409719 28 - TSS region transcription start site region 116653
Tssr116654 12 73444868 to 73444884 16 - TSS region transcription start site region 116654
Tssr116655 12 73444921 to 73444938 17 - TSS region transcription start site region 116655
Tssr113795 12 73445104 to 73445128 24 + TSS region transcription start site region 113795
Gm33929 12 73448318 to 73449215 897 + lincRNA gene predicted gene, 33929
Gm34080 12 73450833 to 73503163 52330 + lncRNA gene predicted gene, 34080
Gm48656 12 73452142 to 73456907 4765 - lincRNA gene predicted gene, 48656
Gm34016 12 73489915 to 73508670 18755 - lincRNA gene predicted gene, 34016
Tssr116656 12 73508666 to 73508695 29 - TSS region transcription start site region 116656
Tssr113796 12 73525993 to 73525994 1 + TSS region transcription start site region 113796
Cpgi4756 12 73529924 to 73530087 163 CpG island CpG island 4756
Tmem30b 12 73543402 to 73546392 2990 - protein coding gene transmembrane protein 30B
Cpgi4757 12 73545114 to 73546814 1700 CpG island CpG island 4757
Tssr116657 12 73546344 to 73546358 14 - TSS region transcription start site region 116657
Tssr116658 12 73546375 to 73546380 5 - TSS region transcription start site region 116658
Tssr116659 12 73546383 to 73546411 28 - TSS region transcription start site region 116659
Tssr116660 12 73546421 to 73546449 28 - TSS region transcription start site region 116660
Tssr113797 12 73548476 to 73548481 5 + TSS region transcription start site region 113797
2210039B01Rik 12 73548483 to 73551986 3503 + lincRNA gene RIKEN cDNA 2210039B01 gene
Tssr116661 12 73583906 to 73583923 17 - TSS region transcription start site region 116661
Cpgi4758 12 73584190 to 73585761 1571 CpG island CpG island 4758
Tssr113798 12 73584234 to 73584245 11 + TSS region transcription start site region 113798
Tssr113799 12 73584322 to 73584327 5 + TSS region transcription start site region 113799
Tssr113800 12 73584640 to 73584659 19 + TSS region transcription start site region 113800
Tssr113801 12 73584662 to 73584687 25 + TSS region transcription start site region 113801
Tssr113802 12 73584788 to 73584810 22 + TSS region transcription start site region 113802
Prkch 12 73584796 to 73778185 193389 + protein coding gene protein kinase C, eta
Tssr113803 12 73584816 to 73584823 7 + TSS region transcription start site region 113803
Tssr113804 12 73584837 to 73584851 14 + TSS region transcription start site region 113804
Tssr113805 12 73585039 to 73585058 19 + TSS region transcription start site region 113805
Tssr113806 12 73586156 to 73586191 35 + TSS region transcription start site region 113806
Tssr116662 12 73586456 to 73586459 3 - TSS region transcription start site region 116662
Tssr113807 12 73591862 to 73591868 6 + TSS region transcription start site region 113807
Tssr113808 12 73593626 to 73593637 11 + TSS region transcription start site region 113808
Tssr113809 12 73594522 to 73594542 20 + TSS region transcription start site region 113809
Tssr113810 12 73595501 to 73595528 27 + TSS region transcription start site region 113810
Tssr113811 12 73598459 to 73598468 9 + TSS region transcription start site region 113811
Tssr113812 12 73598476 to 73598488 12 + TSS region transcription start site region 113812
Tssr113813 12 73598494 to 73598504 10 + TSS region transcription start site region 113813
Tssr113814 12 73603886 to 73603913 27 + TSS region transcription start site region 113814
Tssr113815 12 73605132 to 73605166 34 + TSS region transcription start site region 113815
Tssr113816 12 73616235 to 73616240 5 + TSS region transcription start site region 113816
Tssr113817 12 73618643 to 73618645 2 + TSS region transcription start site region 113817