Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:72990114-74101814

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194 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D12Mit74 12 73010840 to 73011003 163 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 74
Cpgi4746 12 73034941 to 73035266 325 CpG island CpG island 4746
Tssr113777 12 73039336 to 73039345 9 + TSS region transcription start site region 113777
5730409N16Rik 12 73039338 to 73041705 2367 unclassified non-coding RNA gene RIKEN cDNA 5730409N16 gene
Cpgi4747 12 73039416 to 73040008 592 CpG island CpG island 4747
Tssr116637 12 73041708 to 73041710 2 - TSS region transcription start site region 116637
Six1 12 73041827 to 73046712 4885 - protein coding gene sine oculis-related homeobox 1
Cpgi4748 12 73044341 to 73047136 2795 CpG island CpG island 4748
Tssr113778 12 73044528 to 73044537 9 + TSS region transcription start site region 113778
Tssr116638 12 73046457 to 73046476 19 - TSS region transcription start site region 116638
Tssr116639 12 73046702 to 73046724 22 - TSS region transcription start site region 116639
Tssr116640 12 73046855 to 73046869 14 - TSS region transcription start site region 116640
Tssr116641 12 73046873 to 73046901 28 - TSS region transcription start site region 116641
Cpgi4749 12 73050073 to 73050288 215 CpG island CpG island 4749
Cpgi4750 12 73052840 to 73053263 423 CpG island CpG island 4750
Cpgi4751 12 73053700 to 73054238 538 CpG island CpG island 4751
Tssr116642 12 73053889 to 73053912 23 - TSS region transcription start site region 116642
Tssr113779 12 73086461 to 73086474 13 + TSS region transcription start site region 113779
Tssr113780 12 73086479 to 73086490 11 + TSS region transcription start site region 113780
Six4 12 73099609 to 73113456 13847 - protein coding gene sine oculis-related homeobox 4
Tssr116643 12 73102546 to 73102550 4 - TSS region transcription start site region 116643
Cpgi4752 12 73110907 to 73111063 156 CpG island CpG island 4752
Cpgi4753 12 73111591 to 73113535 1944 CpG island CpG island 4753
Tssr116644 12 73113407 to 73113435 28 - TSS region transcription start site region 116644
Cpgi4754 12 73123638 to 73124074 436 CpG island CpG island 4754
Tssr113781 12 73123694 to 73123705 11 + TSS region transcription start site region 113781
Tssr113782 12 73123709 to 73123761 52 + TSS region transcription start site region 113782
Mnat1 12 73123717 to 73273988 150271 + protein coding gene menage a trois 1
Gm23910 12 73145774 to 73145905 131 - snoRNA gene predicted gene, 23910
Tssr116645 12 73198566 to 73198574 8 - TSS region transcription start site region 116645
D630012G11Rik 12 73199036 to 73202754 3718 unclassified gene RIKEN cDNA D630012G11 gene
Tssr3859 12 73202011 to 73202053 42 + TSS region transcription start site region 3859
Tssr113783 12 73212078 to 73212083 5 + TSS region transcription start site region 113783
Tssr113784 12 73226915 to 73226916 1 + TSS region transcription start site region 113784
Gm20206 12 73236024 to 73237229 1205 - pseudogene predicted gene, 20206
Tssr113785 12 73261502 to 73261507 5 + TSS region transcription start site region 113785
Trmt5 12 73280011 to 73286710 6699 - protein coding gene TRM5 tRNA methyltransferase 5
Tssr116646 12 73284974 to 73284992 18 - TSS region transcription start site region 116646
Tssr116647 12 73284998 to 73285028 30 - TSS region transcription start site region 116647
Cpgi4755 12 73286401 to 73287224 823 CpG island CpG island 4755
Tssr116648 12 73286698 to 73286752 54 - TSS region transcription start site region 116648
Slc38a6 12 73286779 to 73354049 67270 + protein coding gene solute carrier family 38, member 6
Tssr113786 12 73286798 to 73286805 7 + TSS region transcription start site region 113786
Tssr113787 12 73286823 to 73286864 41 + TSS region transcription start site region 113787
Tssr113788 12 73286868 to 73286913 45 + TSS region transcription start site region 113788
Tssr116649 12 73287190 to 73287204 14 - TSS region transcription start site region 116649
Tssr116650 12 73324202 to 73324211 9 - TSS region transcription start site region 116650
Tssr116651 12 73325455 to 73325493 38 - TSS region transcription start site region 116651
Tssr113789 12 73336629 to 73336640 11 + TSS region transcription start site region 113789
Tssr113790 12 73336691 to 73336711 20 + TSS region transcription start site region 113790
Tssr113791 12 73336757 to 73336770 13 + TSS region transcription start site region 113791
Tssr113792 12 73336789 to 73336818 29 + TSS region transcription start site region 113792
Tssr113793 12 73352453 to 73352467 14 + TSS region transcription start site region 113793
Tssr113794 12 73353143 to 73353149 6 + TSS region transcription start site region 113794
Gm48653 12 73355081 to 73361997 6916 + lincRNA gene predicted gene, 48653
D830013O20Rik 12 73364075 to 73409557 45482 - lincRNA gene RIKEN cDNA D830013O20 gene
Gm40442 12 73402746 to 73406461 3715 + lncRNA gene predicted gene, 40442
Tssr116652 12 73409543 to 73409588 45 - TSS region transcription start site region 116652
Tssr116653 12 73409691 to 73409719 28 - TSS region transcription start site region 116653
Tssr116654 12 73444868 to 73444884 16 - TSS region transcription start site region 116654
Tssr116655 12 73444921 to 73444938 17 - TSS region transcription start site region 116655
Tssr113795 12 73445104 to 73445128 24 + TSS region transcription start site region 113795
Gm33929 12 73448318 to 73449215 897 + lincRNA gene predicted gene, 33929
Gm34080 12 73450833 to 73503163 52330 + lncRNA gene predicted gene, 34080
Gm48656 12 73452142 to 73456907 4765 - lincRNA gene predicted gene, 48656
Gm34016 12 73489915 to 73508670 18755 - lincRNA gene predicted gene, 34016
Tssr116656 12 73508666 to 73508695 29 - TSS region transcription start site region 116656
Tssr113796 12 73525993 to 73525994 1 + TSS region transcription start site region 113796
Cpgi4756 12 73529924 to 73530087 163 CpG island CpG island 4756
Tmem30b 12 73543402 to 73546392 2990 - protein coding gene transmembrane protein 30B
Cpgi4757 12 73545114 to 73546814 1700 CpG island CpG island 4757
Tssr116657 12 73546344 to 73546358 14 - TSS region transcription start site region 116657
Tssr116658 12 73546375 to 73546380 5 - TSS region transcription start site region 116658
Tssr116659 12 73546383 to 73546411 28 - TSS region transcription start site region 116659
Tssr116660 12 73546421 to 73546449 28 - TSS region transcription start site region 116660
Tssr113797 12 73548476 to 73548481 5 + TSS region transcription start site region 113797
2210039B01Rik 12 73548483 to 73551986 3503 + lincRNA gene RIKEN cDNA 2210039B01 gene
Tssr116661 12 73583906 to 73583923 17 - TSS region transcription start site region 116661
Cpgi4758 12 73584190 to 73585761 1571 CpG island CpG island 4758
Tssr113798 12 73584234 to 73584245 11 + TSS region transcription start site region 113798
Tssr113799 12 73584322 to 73584327 5 + TSS region transcription start site region 113799
Tssr113800 12 73584640 to 73584659 19 + TSS region transcription start site region 113800
Tssr113801 12 73584662 to 73584687 25 + TSS region transcription start site region 113801
Tssr113802 12 73584788 to 73584810 22 + TSS region transcription start site region 113802
Prkch 12 73584796 to 73778185 193389 + protein coding gene protein kinase C, eta
Tssr113803 12 73584816 to 73584823 7 + TSS region transcription start site region 113803
Tssr113804 12 73584837 to 73584851 14 + TSS region transcription start site region 113804
Tssr113805 12 73585039 to 73585058 19 + TSS region transcription start site region 113805
Tssr113806 12 73586156 to 73586191 35 + TSS region transcription start site region 113806
Tssr116662 12 73586456 to 73586459 3 - TSS region transcription start site region 116662
Tssr113807 12 73591862 to 73591868 6 + TSS region transcription start site region 113807
Tssr113808 12 73593626 to 73593637 11 + TSS region transcription start site region 113808
Tssr113809 12 73594522 to 73594542 20 + TSS region transcription start site region 113809
Tssr113810 12 73595501 to 73595528 27 + TSS region transcription start site region 113810
Tssr113811 12 73598459 to 73598468 9 + TSS region transcription start site region 113811
Tssr113812 12 73598476 to 73598488 12 + TSS region transcription start site region 113812
Tssr113813 12 73598494 to 73598504 10 + TSS region transcription start site region 113813
Tssr113814 12 73603886 to 73603913 27 + TSS region transcription start site region 113814
Tssr113815 12 73605132 to 73605166 34 + TSS region transcription start site region 113815
Tssr113816 12 73616235 to 73616240 5 + TSS region transcription start site region 113816
Tssr113817 12 73618643 to 73618645 2 + TSS region transcription start site region 113817
Tssr113818 12 73636693 to 73636695 2 + TSS region transcription start site region 113818
Tssr113819 12 73649273 to 73649293 20 + TSS region transcription start site region 113819
Tssr113820 12 73713911 to 73713916 5 + TSS region transcription start site region 113820
Tssr116663 12 73715798 to 73715808 10 - TSS region transcription start site region 116663
Tssr113821 12 73716173 to 73716184 11 + TSS region transcription start site region 113821
Tssr113822 12 73720596 to 73720601 5 + TSS region transcription start site region 113822
Tssr113823 12 73725662 to 73725666 4 + TSS region transcription start site region 113823
Tssr116664 12 73725876 to 73725879 3 - TSS region transcription start site region 116664
Tssr113824 12 73731781 to 73731785 4 + TSS region transcription start site region 113824
Tssr113825 12 73734802 to 73734807 5 + TSS region transcription start site region 113825
Tssr113826 12 73741941 to 73741979 38 + TSS region transcription start site region 113826
Tssr116665 12 73744868 to 73744882 14 - TSS region transcription start site region 116665
Tssr113827 12 73756011 to 73756042 31 + TSS region transcription start site region 113827
Tssr113828 12 73765691 to 73765692 1 + TSS region transcription start site region 113828
Gm34189 12 73773244 to 73782166 8922 - lncRNA gene predicted gene, 34189
Tssr113829 12 73777411 to 73777418 7 + TSS region transcription start site region 113829
Tssr113830 12 73779531 to 73779541 10 + TSS region transcription start site region 113830
Tssr116666 12 73779719 to 73779726 7 - TSS region transcription start site region 116666
Tssr116667 12 73781439 to 73781462 23 - TSS region transcription start site region 116667
Gm8075 12 73795643 to 73808411 12768 + lincRNA gene predicted gene 8075
Cpgi4759 12 73822417 to 73822625 208 CpG island CpG island 4759
Gm48823 12 73822587 to 73824554 1967 + lincRNA gene predicted gene, 48823
Gm3367 12 73843108 to 73869615 26507 unclassified non-coding RNA gene predicted gene 3367
Tssr113831 12 73867684 to 73867688 4 + TSS region transcription start site region 113831
D12Mit225 12 73868431 to 73868534 103 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 225
Tssr116668 12 73880473 to 73880477 4 - TSS region transcription start site region 116668
Cpgi4760 12 73885107 to 73885386 279 CpG island CpG island 4760
D12Mit212 12 73889423 to 73889549 126 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 212
D12Mit213 12 73889445 to 73889549 104 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 213
Tssr113832 12 73901319 to 73901324 5 + TSS region transcription start site region 113832
Tssr113833 12 73901348 to 73901365 17 + TSS region transcription start site region 113833
Tssr113834 12 73901370 to 73901391 21 + TSS region transcription start site region 113834
Hif1a 12 73901375 to 73947530 46155 + protein coding gene hypoxia inducible factor 1, alpha subunit
Tssr113835 12 73901402 to 73901419 17 + TSS region transcription start site region 113835
Tssr113836 12 73901435 to 73901442 7 + TSS region transcription start site region 113836
Tssr113837 12 73902638 to 73902641 3 + TSS region transcription start site region 113837
Cpgi4761 12 73907347 to 73909014 1667 CpG island CpG island 4761
Tssr113838 12 73907959 to 73907970 11 + TSS region transcription start site region 113838
Tssr113839 12 73907974 to 73908015 41 + TSS region transcription start site region 113839
Tssr113840 12 73908055 to 73908066 11 + TSS region transcription start site region 113840
Tssr113841 12 73908160 to 73908170 10 + TSS region transcription start site region 113841
Tssr113842 12 73908185 to 73908236 51 + TSS region transcription start site region 113842
Tssr113843 12 73908375 to 73908381 6 + TSS region transcription start site region 113843
Tssr113844 12 73909612 to 73909620 8 + TSS region transcription start site region 113844
Tssr113845 12 73910085 to 73910119 34 + TSS region transcription start site region 113845
Tssr113846 12 73913109 to 73913120 11 + TSS region transcription start site region 113846
Tssr113847 12 73913497 to 73913531 34 + TSS region transcription start site region 113847
Tssr113848 12 73919346 to 73919356 10 + TSS region transcription start site region 113848
Tssr113849 12 73923102 to 73923105 3 + TSS region transcription start site region 113849
Tssr113850 12 73923239 to 73923250 11 + TSS region transcription start site region 113850
Tssr113851 12 73927363 to 73927375 12 + TSS region transcription start site region 113851
Tssr113852 12 73927412 to 73927423 11 + TSS region transcription start site region 113852
Tssr113853 12 73928197 to 73928211 14 + TSS region transcription start site region 113853
Tssr113854 12 73930699 to 73930711 12 + TSS region transcription start site region 113854
Tssr113855 12 73931560 to 73931571 11 + TSS region transcription start site region 113855
Gm15283 12 73934724 to 73952524 17800 - antisense lncRNA gene predicted gene 15283
Tssr113856 12 73936200 to 73936223 23 + TSS region transcription start site region 113856
Snapc1l 12 73937653 to 73968375 30722 + protein coding gene small nuclear RNA activating complex, polypeptide 1 like
Tssr113857 12 73937659 to 73937671 12 + TSS region transcription start site region 113857
Tssr113858 12 73937716 to 73937732 16 + TSS region transcription start site region 113858
Tssr113859 12 73940544 to 73940574 30 + TSS region transcription start site region 113859
Tssr113860 12 73940583 to 73940595 12 + TSS region transcription start site region 113860
Tssr113861 12 73941696 to 73941738 42 + TSS region transcription start site region 113861
Tssr113862 12 73941754 to 73941782 28 + TSS region transcription start site region 113862
Tssr113863 12 73941790 to 73941809 19 + TSS region transcription start site region 113863
Tssr113864 12 73941824 to 73941831 7 + TSS region transcription start site region 113864
Tssr113865 12 73941969 to 73941996 27 + TSS region transcription start site region 113865
Tssr113866 12 73942048 to 73942065 17 + TSS region transcription start site region 113866
Tssr113867 12 73942255 to 73942266 11 + TSS region transcription start site region 113867
Tssr113868 12 73945660 to 73945674 14 + TSS region transcription start site region 113868
Tssr113869 12 73945683 to 73945716 33 + TSS region transcription start site region 113869
Tssr113870 12 73945762 to 73945786 24 + TSS region transcription start site region 113870
Tssr113871 12 73945787 to 73945807 20 + TSS region transcription start site region 113871
Tssr113872 12 73946030 to 73946048 18 + TSS region transcription start site region 113872
Tssr113873 12 73946283 to 73946300 17 + TSS region transcription start site region 113873
Tssr113874 12 73946311 to 73946328 17 + TSS region transcription start site region 113874
Cpgi4762 12 73949633 to 73950105 472 CpG island CpG island 4762
Tssr116669 12 73949779 to 73949828 49 - TSS region transcription start site region 116669
Tssr116670 12 73949831 to 73949852 21 - TSS region transcription start site region 116670
Tssr113875 12 73961082 to 73961088 6 + TSS region transcription start site region 113875
S100a11-ps 12 73961148 to 73961447 299 + pseudogene S100 calcium binding protein A11, pseudogene
Cpgi4763 12 73964292 to 73965102 810 CpG island CpG island 4763
Snapc1 12 73964477 to 73985830 21353 + protein coding gene small nuclear RNA activating complex, polypeptide 1
Tssr113876 12 73964481 to 73964542 61 + TSS region transcription start site region 113876
Tssr113877 12 73964544 to 73964563 19 + TSS region transcription start site region 113877
D12Mit33 12 73995685 to 73995827 142 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 33
Cpgi4764 12 73997345 to 73998414 1069 CpG island CpG island 4764
Syt16 12 73997610 to 74267916 270306 + protein coding gene synaptotagmin XVI
Tssr113878 12 73997736 to 73997744 8 + TSS region transcription start site region 113878
Tssr113879 12 73997749 to 73997817 68 + TSS region transcription start site region 113879
Tssr116671 12 74082100 to 74082115 15 - TSS region transcription start site region 116671
Tssr113880 12 74093216 to 74093225 9 + TSS region transcription start site region 113880
Tssr3860 12 74093325 to 74093330 5 + TSS region transcription start site region 3860