Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:72734036-73667754

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153 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr113756 12 72735860 to 72735865 5 + TSS region transcription start site region 113756
Tssr113757 12 72735868 to 72735887 19 + TSS region transcription start site region 113757
Gm48143 12 72740555 to 72741582 1027 - pseudogene predicted gene, 48143
Tssr113758 12 72745743 to 72745767 24 + TSS region transcription start site region 113758
Tssr113759 12 72757382 to 72757410 28 + TSS region transcription start site region 113759
5033425G24Rik 12 72759771 to 72763525 3754 unclassified gene RIKEN cDNA 5033425G24 gene
Cpgi4737 12 72760421 to 72762122 1701 CpG island CpG island 4737
Tssr113760 12 72760521 to 72760529 8 + TSS region transcription start site region 113760
Tssr116628 12 72761042 to 72761090 48 - TSS region transcription start site region 116628
Tssr113761 12 72761129 to 72761140 11 + TSS region transcription start site region 113761
Ppm1a 12 72761211 to 72799819 38608 + protein coding gene protein phosphatase 1A, magnesium dependent, alpha isoform
Tssr113762 12 72761217 to 72761265 48 + TSS region transcription start site region 113762
Tssr113763 12 72761267 to 72761316 49 + TSS region transcription start site region 113763
Tssr113764 12 72765255 to 72765257 2 + TSS region transcription start site region 113764
Tssr113765 12 72792293 to 72792295 2 + TSS region transcription start site region 113765
2900009J20Rik 12 72797374 to 72799817 2443 unclassified gene RIKEN cDNA 2900009J20 gene
Gm33785 12 72817712 to 72821823 4111 + lincRNA gene predicted gene, 33785
Cpgi4738 12 72821123 to 72821532 409 CpG island CpG island 4738
Cpgi4739 12 72831825 to 72832332 507 CpG island CpG island 4739
Gm40441 12 72835935 to 72844522 8587 - lncRNA gene predicted gene, 40441
Tssr113766 12 72844477 to 72844489 12 + TSS region transcription start site region 113766
Tssr116629 12 72846212 to 72846224 12 - TSS region transcription start site region 116629
Cpgi4740 12 72854499 to 72854868 369 CpG island CpG island 4740
4930447C04Rik 12 72880193 to 72917957 37764 - protein coding gene RIKEN cDNA 4930447C04 gene
Tssr116630 12 72907488 to 72907494 6 - TSS region transcription start site region 116630
Cpgi4741 12 72917310 to 72917867 557 CpG island CpG island 4741
Tssr116631 12 72917850 to 72917865 15 - TSS region transcription start site region 116631
Tssr116632 12 72917872 to 72917942 70 - TSS region transcription start site region 116632
Tssr116633 12 72938866 to 72938870 4 - TSS region transcription start site region 116633
Cpgi4742 12 72939579 to 72940543 964 CpG island CpG island 4742
Tssr116634 12 72939588 to 72939606 18 - TSS region transcription start site region 116634
Tssr113767 12 72939729 to 72939758 29 + TSS region transcription start site region 113767
Tssr116635 12 72939763 to 72939775 12 - TSS region transcription start site region 116635
Tssr113768 12 72939874 to 72939888 14 + TSS region transcription start site region 113768
Tssr3858 12 72939891 to 72939900 9 + TSS region transcription start site region 3858
Six6 12 72939892 to 72944899 5007 + protein coding gene sine oculis-related homeobox 6
Tssr113769 12 72939908 to 72939929 21 + TSS region transcription start site region 113769
Tssr113770 12 72939938 to 72939941 3 + TSS region transcription start site region 113770
Cpgi4743 12 72941427 to 72941990 563 CpG island CpG island 4743
Cpgi4744 12 72945358 to 72946389 1031 CpG island CpG island 4744
Tssr116636 12 72945443 to 72945466 23 - TSS region transcription start site region 116636
Tssr113771 12 72945632 to 72945643 11 + TSS region transcription start site region 113771
Tssr113772 12 72945678 to 72945688 10 + TSS region transcription start site region 113772
Tssr113773 12 72945690 to 72945697 7 + TSS region transcription start site region 113773
Tssr113774 12 72945700 to 72945710 10 + TSS region transcription start site region 113774
Tssr113775 12 72945763 to 72945774 11 + TSS region transcription start site region 113775
Tssr113776 12 72945787 to 72945800 13 + TSS region transcription start site region 113776
Gm26709 12 72945807 to 72965931 20124 + lincRNA gene predicted gene, 26709
Gm38170 12 72950895 to 72951710 815 + unclassified gene predicted gene, 38170
Cpgi4745 12 72976858 to 72977066 208 CpG island CpG island 4745
D12Mit74 12 73010840 to 73011003 163 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 74
Cpgi4746 12 73034941 to 73035266 325 CpG island CpG island 4746
Tssr113777 12 73039336 to 73039345 9 + TSS region transcription start site region 113777
5730409N16Rik 12 73039338 to 73041705 2367 unclassified non-coding RNA gene RIKEN cDNA 5730409N16 gene
Cpgi4747 12 73039416 to 73040008 592 CpG island CpG island 4747
Tssr116637 12 73041708 to 73041710 2 - TSS region transcription start site region 116637
Six1 12 73041827 to 73046712 4885 - protein coding gene sine oculis-related homeobox 1
Cpgi4748 12 73044341 to 73047136 2795 CpG island CpG island 4748
Tssr113778 12 73044528 to 73044537 9 + TSS region transcription start site region 113778
Tssr116638 12 73046457 to 73046476 19 - TSS region transcription start site region 116638
Tssr116639 12 73046702 to 73046724 22 - TSS region transcription start site region 116639
Tssr116640 12 73046855 to 73046869 14 - TSS region transcription start site region 116640
Tssr116641 12 73046873 to 73046901 28 - TSS region transcription start site region 116641
Cpgi4749 12 73050073 to 73050288 215 CpG island CpG island 4749
Cpgi4750 12 73052840 to 73053263 423 CpG island CpG island 4750
Cpgi4751 12 73053700 to 73054238 538 CpG island CpG island 4751
Tssr116642 12 73053889 to 73053912 23 - TSS region transcription start site region 116642
Tssr113779 12 73086461 to 73086474 13 + TSS region transcription start site region 113779
Tssr113780 12 73086479 to 73086490 11 + TSS region transcription start site region 113780
Six4 12 73099609 to 73113456 13847 - protein coding gene sine oculis-related homeobox 4
Tssr116643 12 73102546 to 73102550 4 - TSS region transcription start site region 116643
Cpgi4752 12 73110907 to 73111063 156 CpG island CpG island 4752
Cpgi4753 12 73111591 to 73113535 1944 CpG island CpG island 4753
Tssr116644 12 73113407 to 73113435 28 - TSS region transcription start site region 116644
Cpgi4754 12 73123638 to 73124074 436 CpG island CpG island 4754
Tssr113781 12 73123694 to 73123705 11 + TSS region transcription start site region 113781
Tssr113782 12 73123709 to 73123761 52 + TSS region transcription start site region 113782
Mnat1 12 73123717 to 73273988 150271 + protein coding gene menage a trois 1
Gm23910 12 73145774 to 73145905 131 - snoRNA gene predicted gene, 23910
Tssr116645 12 73198566 to 73198574 8 - TSS region transcription start site region 116645
D630012G11Rik 12 73199036 to 73202754 3718 unclassified gene RIKEN cDNA D630012G11 gene
Tssr3859 12 73202011 to 73202053 42 + TSS region transcription start site region 3859
Tssr113783 12 73212078 to 73212083 5 + TSS region transcription start site region 113783
Tssr113784 12 73226915 to 73226916 1 + TSS region transcription start site region 113784
Gm20206 12 73236024 to 73237229 1205 - pseudogene predicted gene, 20206
Tssr113785 12 73261502 to 73261507 5 + TSS region transcription start site region 113785
Trmt5 12 73280011 to 73286710 6699 - protein coding gene TRM5 tRNA methyltransferase 5
Tssr116646 12 73284974 to 73284992 18 - TSS region transcription start site region 116646
Tssr116647 12 73284998 to 73285028 30 - TSS region transcription start site region 116647
Cpgi4755 12 73286401 to 73287224 823 CpG island CpG island 4755
Tssr116648 12 73286698 to 73286752 54 - TSS region transcription start site region 116648
Slc38a6 12 73286779 to 73354049 67270 + protein coding gene solute carrier family 38, member 6
Tssr113786 12 73286798 to 73286805 7 + TSS region transcription start site region 113786
Tssr113787 12 73286823 to 73286864 41 + TSS region transcription start site region 113787
Tssr113788 12 73286868 to 73286913 45 + TSS region transcription start site region 113788
Tssr116649 12 73287190 to 73287204 14 - TSS region transcription start site region 116649
Tssr116650 12 73324202 to 73324211 9 - TSS region transcription start site region 116650
Tssr116651 12 73325455 to 73325493 38 - TSS region transcription start site region 116651
Tssr113789 12 73336629 to 73336640 11 + TSS region transcription start site region 113789
Tssr113790 12 73336691 to 73336711 20 + TSS region transcription start site region 113790
Tssr113791 12 73336757 to 73336770 13 + TSS region transcription start site region 113791
Tssr113792 12 73336789 to 73336818 29 + TSS region transcription start site region 113792
Tssr113793 12 73352453 to 73352467 14 + TSS region transcription start site region 113793
Tssr113794 12 73353143 to 73353149 6 + TSS region transcription start site region 113794
Gm48653 12 73355081 to 73361997 6916 + lincRNA gene predicted gene, 48653
D830013O20Rik 12 73364075 to 73409557 45482 - lincRNA gene RIKEN cDNA D830013O20 gene
Gm40442 12 73402746 to 73406461 3715 + lncRNA gene predicted gene, 40442
Tssr116652 12 73409543 to 73409588 45 - TSS region transcription start site region 116652
Tssr116653 12 73409691 to 73409719 28 - TSS region transcription start site region 116653
Tssr116654 12 73444868 to 73444884 16 - TSS region transcription start site region 116654
Tssr116655 12 73444921 to 73444938 17 - TSS region transcription start site region 116655
Tssr113795 12 73445104 to 73445128 24 + TSS region transcription start site region 113795
Gm33929 12 73448318 to 73449215 897 + lincRNA gene predicted gene, 33929
Gm34080 12 73450833 to 73503163 52330 + lncRNA gene predicted gene, 34080
Gm48656 12 73452142 to 73456907 4765 - lincRNA gene predicted gene, 48656
Gm34016 12 73489915 to 73508670 18755 - lincRNA gene predicted gene, 34016
Tssr116656 12 73508666 to 73508695 29 - TSS region transcription start site region 116656
Tssr113796 12 73525993 to 73525994 1 + TSS region transcription start site region 113796
Cpgi4756 12 73529924 to 73530087 163 CpG island CpG island 4756
Tmem30b 12 73543402 to 73546392 2990 - protein coding gene transmembrane protein 30B
Cpgi4757 12 73545114 to 73546814 1700 CpG island CpG island 4757
Tssr116657 12 73546344 to 73546358 14 - TSS region transcription start site region 116657
Tssr116658 12 73546375 to 73546380 5 - TSS region transcription start site region 116658
Tssr116659 12 73546383 to 73546411 28 - TSS region transcription start site region 116659
Tssr116660 12 73546421 to 73546449 28 - TSS region transcription start site region 116660
Tssr113797 12 73548476 to 73548481 5 + TSS region transcription start site region 113797
2210039B01Rik 12 73548483 to 73551986 3503 + lincRNA gene RIKEN cDNA 2210039B01 gene
Tssr116661 12 73583906 to 73583923 17 - TSS region transcription start site region 116661
Cpgi4758 12 73584190 to 73585761 1571 CpG island CpG island 4758
Tssr113798 12 73584234 to 73584245 11 + TSS region transcription start site region 113798
Tssr113799 12 73584322 to 73584327 5 + TSS region transcription start site region 113799
Tssr113800 12 73584640 to 73584659 19 + TSS region transcription start site region 113800
Tssr113801 12 73584662 to 73584687 25 + TSS region transcription start site region 113801
Tssr113802 12 73584788 to 73584810 22 + TSS region transcription start site region 113802
Prkch 12 73584796 to 73778185 193389 + protein coding gene protein kinase C, eta
Tssr113803 12 73584816 to 73584823 7 + TSS region transcription start site region 113803
Tssr113804 12 73584837 to 73584851 14 + TSS region transcription start site region 113804
Tssr113805 12 73585039 to 73585058 19 + TSS region transcription start site region 113805
Tssr113806 12 73586156 to 73586191 35 + TSS region transcription start site region 113806
Tssr116662 12 73586456 to 73586459 3 - TSS region transcription start site region 116662
Tssr113807 12 73591862 to 73591868 6 + TSS region transcription start site region 113807
Tssr113808 12 73593626 to 73593637 11 + TSS region transcription start site region 113808
Tssr113809 12 73594522 to 73594542 20 + TSS region transcription start site region 113809
Tssr113810 12 73595501 to 73595528 27 + TSS region transcription start site region 113810
Tssr113811 12 73598459 to 73598468 9 + TSS region transcription start site region 113811
Tssr113812 12 73598476 to 73598488 12 + TSS region transcription start site region 113812
Tssr113813 12 73598494 to 73598504 10 + TSS region transcription start site region 113813
Tssr113814 12 73603886 to 73603913 27 + TSS region transcription start site region 113814
Tssr113815 12 73605132 to 73605166 34 + TSS region transcription start site region 113815
Tssr113816 12 73616235 to 73616240 5 + TSS region transcription start site region 113816
Tssr113817 12 73618643 to 73618645 2 + TSS region transcription start site region 113817
Tssr113818 12 73636693 to 73636695 2 + TSS region transcription start site region 113818
Tssr113819 12 73649273 to 73649293 20 + TSS region transcription start site region 113819