Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:72692712-72946823

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48 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr113756 12 72735860 to 72735865 5 + TSS region transcription start site region 113756
Tssr113757 12 72735868 to 72735887 19 + TSS region transcription start site region 113757
Gm48143 12 72740555 to 72741582 1027 - pseudogene predicted gene, 48143
Tssr113758 12 72745743 to 72745767 24 + TSS region transcription start site region 113758
Tssr113759 12 72757382 to 72757410 28 + TSS region transcription start site region 113759
5033425G24Rik 12 72759771 to 72763525 3754 unclassified gene RIKEN cDNA 5033425G24 gene
Cpgi4737 12 72760421 to 72762122 1701 CpG island CpG island 4737
Tssr113760 12 72760521 to 72760529 8 + TSS region transcription start site region 113760
Tssr116628 12 72761042 to 72761090 48 - TSS region transcription start site region 116628
Tssr113761 12 72761129 to 72761140 11 + TSS region transcription start site region 113761
Ppm1a 12 72761211 to 72799819 38608 + protein coding gene protein phosphatase 1A, magnesium dependent, alpha isoform
Tssr113762 12 72761217 to 72761265 48 + TSS region transcription start site region 113762
Tssr113763 12 72761267 to 72761316 49 + TSS region transcription start site region 113763
Tssr113764 12 72765255 to 72765257 2 + TSS region transcription start site region 113764
Tssr113765 12 72792293 to 72792295 2 + TSS region transcription start site region 113765
2900009J20Rik 12 72797374 to 72799817 2443 unclassified gene RIKEN cDNA 2900009J20 gene
Gm33785 12 72817712 to 72821823 4111 + lincRNA gene predicted gene, 33785
Cpgi4738 12 72821123 to 72821532 409 CpG island CpG island 4738
Cpgi4739 12 72831825 to 72832332 507 CpG island CpG island 4739
Gm40441 12 72835935 to 72844522 8587 - lncRNA gene predicted gene, 40441
Tssr113766 12 72844477 to 72844489 12 + TSS region transcription start site region 113766
Tssr116629 12 72846212 to 72846224 12 - TSS region transcription start site region 116629
Cpgi4740 12 72854499 to 72854868 369 CpG island CpG island 4740
4930447C04Rik 12 72880193 to 72917957 37764 - protein coding gene RIKEN cDNA 4930447C04 gene
Tssr116630 12 72907488 to 72907494 6 - TSS region transcription start site region 116630
Cpgi4741 12 72917310 to 72917867 557 CpG island CpG island 4741
Tssr116631 12 72917850 to 72917865 15 - TSS region transcription start site region 116631
Tssr116632 12 72917872 to 72917942 70 - TSS region transcription start site region 116632
Tssr116633 12 72938866 to 72938870 4 - TSS region transcription start site region 116633
Cpgi4742 12 72939579 to 72940543 964 CpG island CpG island 4742
Tssr116634 12 72939588 to 72939606 18 - TSS region transcription start site region 116634
Tssr113767 12 72939729 to 72939758 29 + TSS region transcription start site region 113767
Tssr116635 12 72939763 to 72939775 12 - TSS region transcription start site region 116635
Tssr113768 12 72939874 to 72939888 14 + TSS region transcription start site region 113768
Tssr3858 12 72939891 to 72939900 9 + TSS region transcription start site region 3858
Six6 12 72939892 to 72944899 5007 + protein coding gene sine oculis-related homeobox 6
Tssr113769 12 72939908 to 72939929 21 + TSS region transcription start site region 113769
Tssr113770 12 72939938 to 72939941 3 + TSS region transcription start site region 113770
Cpgi4743 12 72941427 to 72941990 563 CpG island CpG island 4743
Cpgi4744 12 72945358 to 72946389 1031 CpG island CpG island 4744
Tssr116636 12 72945443 to 72945466 23 - TSS region transcription start site region 116636
Tssr113771 12 72945632 to 72945643 11 + TSS region transcription start site region 113771
Tssr113772 12 72945678 to 72945688 10 + TSS region transcription start site region 113772
Tssr113773 12 72945690 to 72945697 7 + TSS region transcription start site region 113773
Tssr113774 12 72945700 to 72945710 10 + TSS region transcription start site region 113774
Tssr113775 12 72945763 to 72945774 11 + TSS region transcription start site region 113775
Tssr113776 12 72945787 to 72945800 13 + TSS region transcription start site region 113776
Gm26709 12 72945807 to 72965931 20124 + lincRNA gene predicted gene, 26709