Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:72011383-73105119

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170 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr116581 12 72014529 to 72014530 1 - TSS region transcription start site region 116581
Gm40440 12 72026893 to 72040193 13300 - lncRNA gene predicted gene, 40440
Gm7986 12 72048709 to 72049259 550 - pseudogene predicted gene 7986
Gpr135 12 72069618 to 72070991 1373 - protein coding gene G protein-coupled receptor 135
Cpgi4724 12 72069788 to 72071457 1669 CpG island CpG island 4724
Gm3225 12 72070970 to 72072018 1048 protein coding gene predicted gene 3225
Tssr116582 12 72071067 to 72071079 12 - TSS region transcription start site region 116582
Tssr116583 12 72071093 to 72071106 13 - TSS region transcription start site region 116583
L3hypdh 12 72073428 to 72085439 12011 - protein coding gene L-3-hydroxyproline dehydratase (trans-)
Cpgi4725 12 72082459 to 72082711 252 CpG island CpG island 4725
Cpgi4726 12 72084450 to 72086395 1945 CpG island CpG island 4726
Tssr116584 12 72084713 to 72084745 32 - TSS region transcription start site region 116584
Tssr116585 12 72085308 to 72085320 12 - TSS region transcription start site region 116585
Tssr116586 12 72085334 to 72085361 27 - TSS region transcription start site region 116586
Tssr116587 12 72085369 to 72085389 20 - TSS region transcription start site region 116587
Tssr116588 12 72085393 to 72085418 25 - TSS region transcription start site region 116588
Jkamp 12 72085839 to 72101527 15688 + protein coding gene JNK1/MAPK8-associated membrane protein
Tssr113739 12 72085847 to 72085864 17 + TSS region transcription start site region 113739
Tssr113740 12 72086093 to 72086147 54 + TSS region transcription start site region 113740
Gm19135 12 72096432 to 72098104 1672 + pseudogene predicted gene, 19135
Ccdc175 12 72101300 to 72185029 83729 - protein coding gene coiled-coil domain containing 175
Tssr116589 12 72116259 to 72116264 5 - TSS region transcription start site region 116589
Gm18243 12 72120912 to 72121795 883 - pseudogene predicted gene, 18243
Gm24466 12 72130210 to 72130318 108 - miRNA gene predicted gene, 24466
Tssr116590 12 72178740 to 72178752 12 - TSS region transcription start site region 116590
Cpgi4727 12 72184875 to 72185076 201 CpG island CpG island 4727
Tssr116591 12 72184990 to 72185033 43 - TSS region transcription start site region 116591
Rtn1 12 72211752 to 72409054 197302 - protein coding gene reticulon 1
Tssr116592 12 72211901 to 72211913 12 - TSS region transcription start site region 116592
Tssr116593 12 72212154 to 72212177 23 - TSS region transcription start site region 116593
Tssr116594 12 72212191 to 72212202 11 - TSS region transcription start site region 116594
Tssr116595 12 72212206 to 72212257 51 - TSS region transcription start site region 116595
Tssr113741 12 72212283 to 72212296 13 + TSS region transcription start site region 113741
Tssr113742 12 72212297 to 72212320 23 + TSS region transcription start site region 113742
Tssr116596 12 72212339 to 72212405 66 - TSS region transcription start site region 116596
Tssr116597 12 72212412 to 72212422 10 - TSS region transcription start site region 116597
Tssr116598 12 72212478 to 72212506 28 - TSS region transcription start site region 116598
Tssr116599 12 72212515 to 72212524 9 - TSS region transcription start site region 116599
Tssr116600 12 72212527 to 72212542 15 - TSS region transcription start site region 116600
Tssr116601 12 72212561 to 72212574 13 - TSS region transcription start site region 116601
Tssr116602 12 72216795 to 72216830 35 - TSS region transcription start site region 116602
Tssr116603 12 72219280 to 72219304 24 - TSS region transcription start site region 116603
Tssr116604 12 72223399 to 72223425 26 - TSS region transcription start site region 116604
Cpgi4728 12 72223438 to 72223659 221 CpG island CpG island 4728
Cpgi4729 12 72236319 to 72237129 810 CpG island CpG island 4729
Tssr116605 12 72236666 to 72236684 18 - TSS region transcription start site region 116605
Tssr116606 12 72236692 to 72236708 16 - TSS region transcription start site region 116606
D12Mit201 12 72291461 to 72291675 214 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 201
Tglq6 12 72291461 to 72291675 214 QTL triglyceride QTL 6
Cpgi4730 12 72303776 to 72304232 456 CpG island CpG island 4730
Tssr116607 12 72374324 to 72374348 24 - TSS region transcription start site region 116607
Tssr116608 12 72375087 to 72375097 10 - TSS region transcription start site region 116608
Tssr116609 12 72375128 to 72375138 10 - TSS region transcription start site region 116609
Cpgi4731 12 72407801 to 72408961 1160 CpG island CpG island 4731
Tssr116610 12 72408291 to 72408323 32 - TSS region transcription start site region 116610
Tssr116611 12 72408326 to 72408338 12 - TSS region transcription start site region 116611
Tssr113743 12 72408377 to 72408387 10 + TSS region transcription start site region 113743
Tssr116612 12 72408578 to 72408583 5 - TSS region transcription start site region 116612
Tssr116613 12 72408662 to 72408673 11 - TSS region transcription start site region 116613
Tssr116614 12 72408688 to 72408740 52 - TSS region transcription start site region 116614
Tssr116615 12 72408741 to 72408759 18 - TSS region transcription start site region 116615
Tssr116616 12 72408846 to 72408851 5 - TSS region transcription start site region 116616
Tssr116617 12 72408934 to 72408945 11 - TSS region transcription start site region 116617
Gm33487 12 72424648 to 72432318 7670 - lncRNA gene predicted gene, 33487
Lrrc9 12 72433942 to 72517989 84047 + protein coding gene leucine rich repeat containing 9
Tssr113744 12 72434641 to 72434651 10 + TSS region transcription start site region 113744
Tssr113745 12 72434659 to 72434705 46 + TSS region transcription start site region 113745
Cpgi4732 12 72441830 to 72441985 155 CpG island CpG island 4732
Tssr113746 12 72441852 to 72441864 12 + TSS region transcription start site region 113746
Tssr113747 12 72441871 to 72441896 25 + TSS region transcription start site region 113747
Tssr113748 12 72441950 to 72441970 20 + TSS region transcription start site region 113748
Tssr113749 12 72441982 to 72441992 10 + TSS region transcription start site region 113749
Tssr113750 12 72442352 to 72442367 15 + TSS region transcription start site region 113750
D12Mit155 12 72472204 to 72472342 138 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 155
Gm44392 12 72475853 to 72475967 114 - miRNA gene predicted gene, 44392
Tssr116618 12 72490086 to 72490091 5 - TSS region transcription start site region 116618
Cpgi4733 12 72535990 to 72536655 665 CpG island CpG island 4733
Tssr113751 12 72536342 to 72536396 54 + TSS region transcription start site region 113751
Pcnx4 12 72536383 to 72580119 43736 + protein coding gene pecanex homolog 4
Gm4756 12 72620119 to 72629021 8902 - protein coding gene predicted gene 4756
Tssr113752 12 72620673 to 72620716 43 + TSS region transcription start site region 113752
Ly6e-ps1 12 72620775 to 72621141 366 + pseudogene lymphocyte antigen 6 complex, locus E, pseudogene 1
Tssr116619 12 72628833 to 72628840 7 - TSS region transcription start site region 116619
Tssr116620 12 72628851 to 72628866 15 - TSS region transcription start site region 116620
Tssr116621 12 72628868 to 72628887 19 - TSS region transcription start site region 116621
Tssr116622 12 72628896 to 72628907 11 - TSS region transcription start site region 116622
Tssr116623 12 72628929 to 72628938 9 - TSS region transcription start site region 116623
Tssr116624 12 72628956 to 72628965 9 - TSS region transcription start site region 116624
Dhrs7 12 72650353 to 72664828 14475 - protein coding gene dehydrogenase/reductase (SDR family) member 7
D12Mit274 12 72651766 to 72651889 123 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 274
Cpgi4734 12 72655875 to 72656054 179 CpG island CpG island 4734
Cpgi4735 12 72659057 to 72659307 250 CpG island CpG island 4735
Cpgi4736 12 72664459 to 72665246 787 CpG island CpG island 4736
Tssr116625 12 72664735 to 72664756 21 - TSS region transcription start site region 116625
Tssr116626 12 72664759 to 72664813 54 - TSS region transcription start site region 116626
Tssr113753 12 72664984 to 72664994 10 + TSS region transcription start site region 113753
Tssr113754 12 72665048 to 72665053 5 + TSS region transcription start site region 113754
Tssr116627 12 72667946 to 72667947 1 - TSS region transcription start site region 116627
Tssr113755 12 72668367 to 72668370 3 + TSS region transcription start site region 113755
Tssr113756 12 72735860 to 72735865 5 + TSS region transcription start site region 113756
Tssr113757 12 72735868 to 72735887 19 + TSS region transcription start site region 113757
Gm48143 12 72740555 to 72741582 1027 - pseudogene predicted gene, 48143
Tssr113758 12 72745743 to 72745767 24 + TSS region transcription start site region 113758
Tssr113759 12 72757382 to 72757410 28 + TSS region transcription start site region 113759
5033425G24Rik 12 72759771 to 72763525 3754 unclassified gene RIKEN cDNA 5033425G24 gene
Cpgi4737 12 72760421 to 72762122 1701 CpG island CpG island 4737
Tssr113760 12 72760521 to 72760529 8 + TSS region transcription start site region 113760
Tssr116628 12 72761042 to 72761090 48 - TSS region transcription start site region 116628
Tssr113761 12 72761129 to 72761140 11 + TSS region transcription start site region 113761
Ppm1a 12 72761211 to 72799819 38608 + protein coding gene protein phosphatase 1A, magnesium dependent, alpha isoform
Tssr113762 12 72761217 to 72761265 48 + TSS region transcription start site region 113762
Tssr113763 12 72761267 to 72761316 49 + TSS region transcription start site region 113763
Tssr113764 12 72765255 to 72765257 2 + TSS region transcription start site region 113764
Tssr113765 12 72792293 to 72792295 2 + TSS region transcription start site region 113765
2900009J20Rik 12 72797374 to 72799817 2443 unclassified gene RIKEN cDNA 2900009J20 gene
Gm33785 12 72817712 to 72821823 4111 + lincRNA gene predicted gene, 33785
Cpgi4738 12 72821123 to 72821532 409 CpG island CpG island 4738
Cpgi4739 12 72831825 to 72832332 507 CpG island CpG island 4739
Gm40441 12 72835935 to 72844522 8587 - lncRNA gene predicted gene, 40441
Tssr113766 12 72844477 to 72844489 12 + TSS region transcription start site region 113766
Tssr116629 12 72846212 to 72846224 12 - TSS region transcription start site region 116629
Cpgi4740 12 72854499 to 72854868 369 CpG island CpG island 4740
4930447C04Rik 12 72880193 to 72917957 37764 - protein coding gene RIKEN cDNA 4930447C04 gene
Tssr116630 12 72907488 to 72907494 6 - TSS region transcription start site region 116630
Cpgi4741 12 72917310 to 72917867 557 CpG island CpG island 4741
Tssr116631 12 72917850 to 72917865 15 - TSS region transcription start site region 116631
Tssr116632 12 72917872 to 72917942 70 - TSS region transcription start site region 116632
Tssr116633 12 72938866 to 72938870 4 - TSS region transcription start site region 116633
Cpgi4742 12 72939579 to 72940543 964 CpG island CpG island 4742
Tssr116634 12 72939588 to 72939606 18 - TSS region transcription start site region 116634
Tssr113767 12 72939729 to 72939758 29 + TSS region transcription start site region 113767
Tssr116635 12 72939763 to 72939775 12 - TSS region transcription start site region 116635
Tssr113768 12 72939874 to 72939888 14 + TSS region transcription start site region 113768
Tssr3858 12 72939891 to 72939900 9 + TSS region transcription start site region 3858
Six6 12 72939892 to 72944899 5007 + protein coding gene sine oculis-related homeobox 6
Tssr113769 12 72939908 to 72939929 21 + TSS region transcription start site region 113769
Tssr113770 12 72939938 to 72939941 3 + TSS region transcription start site region 113770
Cpgi4743 12 72941427 to 72941990 563 CpG island CpG island 4743
Cpgi4744 12 72945358 to 72946389 1031 CpG island CpG island 4744
Tssr116636 12 72945443 to 72945466 23 - TSS region transcription start site region 116636
Tssr113771 12 72945632 to 72945643 11 + TSS region transcription start site region 113771
Tssr113772 12 72945678 to 72945688 10 + TSS region transcription start site region 113772
Tssr113773 12 72945690 to 72945697 7 + TSS region transcription start site region 113773
Tssr113774 12 72945700 to 72945710 10 + TSS region transcription start site region 113774
Tssr113775 12 72945763 to 72945774 11 + TSS region transcription start site region 113775
Tssr113776 12 72945787 to 72945800 13 + TSS region transcription start site region 113776
Gm26709 12 72945807 to 72965931 20124 + lincRNA gene predicted gene, 26709
Gm38170 12 72950895 to 72951710 815 + unclassified gene predicted gene, 38170
Cpgi4745 12 72976858 to 72977066 208 CpG island CpG island 4745
D12Mit74 12 73010840 to 73011003 163 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 74
Cpgi4746 12 73034941 to 73035266 325 CpG island CpG island 4746
Tssr113777 12 73039336 to 73039345 9 + TSS region transcription start site region 113777
5730409N16Rik 12 73039338 to 73041705 2367 unclassified non-coding RNA gene RIKEN cDNA 5730409N16 gene
Cpgi4747 12 73039416 to 73040008 592 CpG island CpG island 4747
Tssr116637 12 73041708 to 73041710 2 - TSS region transcription start site region 116637
Six1 12 73041827 to 73046712 4885 - protein coding gene sine oculis-related homeobox 1
Cpgi4748 12 73044341 to 73047136 2795 CpG island CpG island 4748
Tssr113778 12 73044528 to 73044537 9 + TSS region transcription start site region 113778
Tssr116638 12 73046457 to 73046476 19 - TSS region transcription start site region 116638
Tssr116639 12 73046702 to 73046724 22 - TSS region transcription start site region 116639
Tssr116640 12 73046855 to 73046869 14 - TSS region transcription start site region 116640
Tssr116641 12 73046873 to 73046901 28 - TSS region transcription start site region 116641
Cpgi4749 12 73050073 to 73050288 215 CpG island CpG island 4749
Cpgi4750 12 73052840 to 73053263 423 CpG island CpG island 4750
Cpgi4751 12 73053700 to 73054238 538 CpG island CpG island 4751
Tssr116642 12 73053889 to 73053912 23 - TSS region transcription start site region 116642
Tssr113779 12 73086461 to 73086474 13 + TSS region transcription start site region 113779
Tssr113780 12 73086479 to 73086490 11 + TSS region transcription start site region 113780
Six4 12 73099609 to 73113456 13847 - protein coding gene sine oculis-related homeobox 4
Tssr116643 12 73102546 to 73102550 4 - TSS region transcription start site region 116643