Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:71372842-72112993

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48 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
1700083H02Rik 12 71383154 to 71384208 1054 - lincRNA gene RIKEN cDNA 1700083H02 gene
Tssr116580 12 71384185 to 71384235 50 - TSS region transcription start site region 116580
Gm17945 12 71460478 to 71461342 864 - pseudogene predicted gene, 17945
D12Mit90 12 71489147 to 71489294 147 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 90
4930404H11Rik 12 71540607 to 71556133 15526 + lincRNA gene RIKEN cDNA 4930404H11 gene
Gm40439 12 71561109 to 71563821 2712 + lncRNA gene predicted gene, 40439
9630002D21Rik 12 71577931 to 71718589 140658 + lincRNA gene RIKEN cDNA 9630002D21 gene
Gm46356 12 71628835 to 71629661 826 - lncRNA gene predicted gene, 46356
D12Mit273 12 71630105 to 71630211 106 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 273
Gm22959 12 71724652 to 71724954 302 + unclassified non-coding RNA gene predicted gene, 22959
D12Mit91 12 71742842 to 71742993 151 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 91
Gm47555 12 71754050 to 71754385 335 - pseudogene predicted gene, 47555
Gm47556 12 71766786 to 71768000 1214 - pseudogene predicted gene, 47556
Cpgi4723 12 71830705 to 71832136 1431 CpG island CpG island 4723
Tssr113730 12 71831064 to 71831178 114 + TSS region transcription start site region 113730
Daam1 12 71831078 to 71992333 161255 + protein coding gene dishevelled associated activator of morphogenesis 1
Tssr113731 12 71832466 to 71832504 38 + TSS region transcription start site region 113731
Gm7985 12 71846311 to 71847291 980 - pseudogene predicted gene 7985
Gdap5 12 71849197 to 71849584 387 unclassified gene ganglioside-induced differentiation-associated-protein 5
Tssr113732 12 71876033 to 71876064 31 + TSS region transcription start site region 113732
Gm40887 12 71877352 to 71889614 12262 - lncRNA gene predicted gene, 40887
Tssr113733 12 71889451 to 71889466 15 + TSS region transcription start site region 113733
Tssr113734 12 71889501 to 71889515 14 + TSS region transcription start site region 113734
Tssr113735 12 71889538 to 71889556 18 + TSS region transcription start site region 113735
Tssr113736 12 71889713 to 71889723 10 + TSS region transcription start site region 113736
Tssr113737 12 71889726 to 71889740 14 + TSS region transcription start site region 113737
Tssr113738 12 71959657 to 71959659 2 + TSS region transcription start site region 113738
Tssr116581 12 72014529 to 72014530 1 - TSS region transcription start site region 116581
Gm40440 12 72026893 to 72040193 13300 - lncRNA gene predicted gene, 40440
Gm7986 12 72048709 to 72049259 550 - pseudogene predicted gene 7986
Gpr135 12 72069618 to 72070991 1373 - protein coding gene G protein-coupled receptor 135
Cpgi4724 12 72069788 to 72071457 1669 CpG island CpG island 4724
Gm3225 12 72070970 to 72072018 1048 protein coding gene predicted gene 3225
Tssr116582 12 72071067 to 72071079 12 - TSS region transcription start site region 116582
Tssr116583 12 72071093 to 72071106 13 - TSS region transcription start site region 116583
L3hypdh 12 72073428 to 72085439 12011 - protein coding gene L-3-hydroxyproline dehydratase (trans-)
Cpgi4725 12 72082459 to 72082711 252 CpG island CpG island 4725
Cpgi4726 12 72084450 to 72086395 1945 CpG island CpG island 4726
Tssr116584 12 72084713 to 72084745 32 - TSS region transcription start site region 116584
Tssr116585 12 72085308 to 72085320 12 - TSS region transcription start site region 116585
Tssr116586 12 72085334 to 72085361 27 - TSS region transcription start site region 116586
Tssr116587 12 72085369 to 72085389 20 - TSS region transcription start site region 116587
Tssr116588 12 72085393 to 72085418 25 - TSS region transcription start site region 116588
Jkamp 12 72085839 to 72101527 15688 + protein coding gene JNK1/MAPK8-associated membrane protein
Tssr113739 12 72085847 to 72085864 17 + TSS region transcription start site region 113739
Tssr113740 12 72086093 to 72086147 54 + TSS region transcription start site region 113740
Gm19135 12 72096432 to 72098104 1672 + pseudogene predicted gene, 19135
Ccdc175 12 72101300 to 72185029 83729 - protein coding gene coiled-coil domain containing 175