Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:71336078-72487333

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106 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm33016 12 71337628 to 71342803 5175 + lincRNA gene predicted gene, 33016
Tssr113728 12 71355435 to 71355454 19 + TSS region transcription start site region 113728
Gm40438 12 71355454 to 71362077 6623 + lincRNA gene predicted gene, 40438
Tssr113729 12 71361922 to 71361940 18 + TSS region transcription start site region 113729
1700083H02Rik 12 71383154 to 71384208 1054 - lincRNA gene RIKEN cDNA 1700083H02 gene
Tssr116580 12 71384185 to 71384235 50 - TSS region transcription start site region 116580
Gm17945 12 71460478 to 71461342 864 - pseudogene predicted gene, 17945
D12Mit90 12 71489147 to 71489294 147 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 90
4930404H11Rik 12 71540607 to 71556133 15526 + lincRNA gene RIKEN cDNA 4930404H11 gene
Gm40439 12 71561109 to 71563821 2712 + lncRNA gene predicted gene, 40439
9630002D21Rik 12 71577931 to 71718589 140658 + lincRNA gene RIKEN cDNA 9630002D21 gene
Gm46356 12 71628835 to 71629661 826 - lncRNA gene predicted gene, 46356
D12Mit273 12 71630105 to 71630211 106 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 273
Gm22959 12 71724652 to 71724954 302 + unclassified non-coding RNA gene predicted gene, 22959
D12Mit91 12 71742842 to 71742993 151 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 91
Gm47555 12 71754050 to 71754385 335 - pseudogene predicted gene, 47555
Gm47556 12 71766786 to 71768000 1214 - pseudogene predicted gene, 47556
Cpgi4723 12 71830705 to 71832136 1431 CpG island CpG island 4723
Tssr113730 12 71831064 to 71831178 114 + TSS region transcription start site region 113730
Daam1 12 71831078 to 71992333 161255 + protein coding gene dishevelled associated activator of morphogenesis 1
Tssr113731 12 71832466 to 71832504 38 + TSS region transcription start site region 113731
Gm7985 12 71846311 to 71847291 980 - pseudogene predicted gene 7985
Gdap5 12 71849197 to 71849584 387 unclassified gene ganglioside-induced differentiation-associated-protein 5
Tssr113732 12 71876033 to 71876064 31 + TSS region transcription start site region 113732
Gm40887 12 71877352 to 71889614 12262 - lncRNA gene predicted gene, 40887
Tssr113733 12 71889451 to 71889466 15 + TSS region transcription start site region 113733
Tssr113734 12 71889501 to 71889515 14 + TSS region transcription start site region 113734
Tssr113735 12 71889538 to 71889556 18 + TSS region transcription start site region 113735
Tssr113736 12 71889713 to 71889723 10 + TSS region transcription start site region 113736
Tssr113737 12 71889726 to 71889740 14 + TSS region transcription start site region 113737
Tssr113738 12 71959657 to 71959659 2 + TSS region transcription start site region 113738
Tssr116581 12 72014529 to 72014530 1 - TSS region transcription start site region 116581
Gm40440 12 72026893 to 72040193 13300 - lncRNA gene predicted gene, 40440
Gm7986 12 72048709 to 72049259 550 - pseudogene predicted gene 7986
Gpr135 12 72069618 to 72070991 1373 - protein coding gene G protein-coupled receptor 135
Cpgi4724 12 72069788 to 72071457 1669 CpG island CpG island 4724
Gm3225 12 72070970 to 72072018 1048 protein coding gene predicted gene 3225
Tssr116582 12 72071067 to 72071079 12 - TSS region transcription start site region 116582
Tssr116583 12 72071093 to 72071106 13 - TSS region transcription start site region 116583
L3hypdh 12 72073428 to 72085439 12011 - protein coding gene L-3-hydroxyproline dehydratase (trans-)
Cpgi4725 12 72082459 to 72082711 252 CpG island CpG island 4725
Cpgi4726 12 72084450 to 72086395 1945 CpG island CpG island 4726
Tssr116584 12 72084713 to 72084745 32 - TSS region transcription start site region 116584
Tssr116585 12 72085308 to 72085320 12 - TSS region transcription start site region 116585
Tssr116586 12 72085334 to 72085361 27 - TSS region transcription start site region 116586
Tssr116587 12 72085369 to 72085389 20 - TSS region transcription start site region 116587
Tssr116588 12 72085393 to 72085418 25 - TSS region transcription start site region 116588
Jkamp 12 72085839 to 72101527 15688 + protein coding gene JNK1/MAPK8-associated membrane protein
Tssr113739 12 72085847 to 72085864 17 + TSS region transcription start site region 113739
Tssr113740 12 72086093 to 72086147 54 + TSS region transcription start site region 113740
Gm19135 12 72096432 to 72098104 1672 + pseudogene predicted gene, 19135
Ccdc175 12 72101300 to 72185029 83729 - protein coding gene coiled-coil domain containing 175
Tssr116589 12 72116259 to 72116264 5 - TSS region transcription start site region 116589
Gm18243 12 72120912 to 72121795 883 - pseudogene predicted gene, 18243
Gm24466 12 72130210 to 72130318 108 - miRNA gene predicted gene, 24466
Tssr116590 12 72178740 to 72178752 12 - TSS region transcription start site region 116590
Cpgi4727 12 72184875 to 72185076 201 CpG island CpG island 4727
Tssr116591 12 72184990 to 72185033 43 - TSS region transcription start site region 116591
Rtn1 12 72211752 to 72409054 197302 - protein coding gene reticulon 1
Tssr116592 12 72211901 to 72211913 12 - TSS region transcription start site region 116592
Tssr116593 12 72212154 to 72212177 23 - TSS region transcription start site region 116593
Tssr116594 12 72212191 to 72212202 11 - TSS region transcription start site region 116594
Tssr116595 12 72212206 to 72212257 51 - TSS region transcription start site region 116595
Tssr113741 12 72212283 to 72212296 13 + TSS region transcription start site region 113741
Tssr113742 12 72212297 to 72212320 23 + TSS region transcription start site region 113742
Tssr116596 12 72212339 to 72212405 66 - TSS region transcription start site region 116596
Tssr116597 12 72212412 to 72212422 10 - TSS region transcription start site region 116597
Tssr116598 12 72212478 to 72212506 28 - TSS region transcription start site region 116598
Tssr116599 12 72212515 to 72212524 9 - TSS region transcription start site region 116599
Tssr116600 12 72212527 to 72212542 15 - TSS region transcription start site region 116600
Tssr116601 12 72212561 to 72212574 13 - TSS region transcription start site region 116601
Tssr116602 12 72216795 to 72216830 35 - TSS region transcription start site region 116602
Tssr116603 12 72219280 to 72219304 24 - TSS region transcription start site region 116603
Tssr116604 12 72223399 to 72223425 26 - TSS region transcription start site region 116604
Cpgi4728 12 72223438 to 72223659 221 CpG island CpG island 4728
Cpgi4729 12 72236319 to 72237129 810 CpG island CpG island 4729
Tssr116605 12 72236666 to 72236684 18 - TSS region transcription start site region 116605
Tssr116606 12 72236692 to 72236708 16 - TSS region transcription start site region 116606
D12Mit201 12 72291461 to 72291675 214 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 201
Tglq6 12 72291461 to 72291675 214 QTL triglyceride QTL 6
Cpgi4730 12 72303776 to 72304232 456 CpG island CpG island 4730
Tssr116607 12 72374324 to 72374348 24 - TSS region transcription start site region 116607
Tssr116608 12 72375087 to 72375097 10 - TSS region transcription start site region 116608
Tssr116609 12 72375128 to 72375138 10 - TSS region transcription start site region 116609
Cpgi4731 12 72407801 to 72408961 1160 CpG island CpG island 4731
Tssr116610 12 72408291 to 72408323 32 - TSS region transcription start site region 116610
Tssr116611 12 72408326 to 72408338 12 - TSS region transcription start site region 116611
Tssr113743 12 72408377 to 72408387 10 + TSS region transcription start site region 113743
Tssr116612 12 72408578 to 72408583 5 - TSS region transcription start site region 116612
Tssr116613 12 72408662 to 72408673 11 - TSS region transcription start site region 116613
Tssr116614 12 72408688 to 72408740 52 - TSS region transcription start site region 116614
Tssr116615 12 72408741 to 72408759 18 - TSS region transcription start site region 116615
Tssr116616 12 72408846 to 72408851 5 - TSS region transcription start site region 116616
Tssr116617 12 72408934 to 72408945 11 - TSS region transcription start site region 116617
Gm33487 12 72424648 to 72432318 7670 - lncRNA gene predicted gene, 33487
Lrrc9 12 72433942 to 72517989 84047 + protein coding gene leucine rich repeat containing 9
Tssr113744 12 72434641 to 72434651 10 + TSS region transcription start site region 113744
Tssr113745 12 72434659 to 72434705 46 + TSS region transcription start site region 113745
Cpgi4732 12 72441830 to 72441985 155 CpG island CpG island 4732
Tssr113746 12 72441852 to 72441864 12 + TSS region transcription start site region 113746
Tssr113747 12 72441871 to 72441896 25 + TSS region transcription start site region 113747
Tssr113748 12 72441950 to 72441970 20 + TSS region transcription start site region 113748
Tssr113749 12 72441982 to 72441992 10 + TSS region transcription start site region 113749
Tssr113750 12 72442352 to 72442367 15 + TSS region transcription start site region 113750
D12Mit155 12 72472204 to 72472342 138 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 155
Gm44392 12 72475853 to 72475967 114 - miRNA gene predicted gene, 44392