Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:70345182-70998780

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Trim9 12 70244533 to 70347614 103081 - protein coding gene tripartite motif-containing 9
Cpgi4710 12 70345979 to 70347885 1906 CpG island CpG island 4710
Tssr116566 12 70346854 to 70346867 13 - TSS region transcription start site region 116566
Tssr116567 12 70347300 to 70347360 60 - TSS region transcription start site region 116567
Gm32151 12 70347462 to 70351706 4244 + bidirectional promoter lncRNA gene predicted gene, 32151
Tssr116568 12 70347498 to 70347513 15 - TSS region transcription start site region 116568
Tssr116569 12 70347536 to 70347556 20 - TSS region transcription start site region 116569
Gm40435 12 70366749 to 70369457 2708 - lncRNA gene predicted gene, 40435
Tssr116570 12 70371686 to 70371689 3 - TSS region transcription start site region 116570
Cpgi4711 12 70452823 to 70453575 752 CpG island CpG island 4711
Tssr113679 12 70453074 to 70453080 6 + TSS region transcription start site region 113679
Tssr113680 12 70453096 to 70453107 11 + TSS region transcription start site region 113680
Tssr113681 12 70453121 to 70453165 44 + TSS region transcription start site region 113681
Tmx1 12 70453154 to 70467624 14470 + protein coding gene thioredoxin-related transmembrane protein 1
Tssr113682 12 70455391 to 70455406 15 + TSS region transcription start site region 113682
Tssr113683 12 70455706 to 70455710 4 + TSS region transcription start site region 113683
Tssr113684 12 70459824 to 70459835 11 + TSS region transcription start site region 113684
Tssr113685 12 70459866 to 70459873 7 + TSS region transcription start site region 113685
Tssr113686 12 70460522 to 70460547 25 + TSS region transcription start site region 113686
Tssr113687 12 70466115 to 70466135 20 + TSS region transcription start site region 113687
Gm48847 12 70478615 to 70493247 14632 + lincRNA gene predicted gene, 48847
Tssr116571 12 70514010 to 70514015 5 - TSS region transcription start site region 116571
Gm32219 12 70535666 to 70544587 8921 + lincRNA gene predicted gene, 32219
Cpgi4712 12 70539896 to 70540195 299 CpG island CpG island 4712
Gm40436 12 70590499 to 70622711 32212 + lncRNA gene predicted gene, 40436
Tssr113688 12 70649994 to 70650002 8 + TSS region transcription start site region 113688
Tssr113689 12 70650013 to 70650031 18 + TSS region transcription start site region 113689
Tssr113690 12 70650075 to 70650088 13 + TSS region transcription start site region 113690
Gm24474 12 70650182 to 70693780 43598 + lincRNA gene predicted gene, 24474
Tssr113691 12 70672429 to 70672444 15 + TSS region transcription start site region 113691
Gm47290 12 70673646 to 70673746 100 + snRNA gene predicted gene, 47290
Gm48866 12 70674123 to 70675456 1333 + lincRNA gene predicted gene, 48866
Gm32369 12 70679780 to 70682215 2435 - lincRNA gene predicted gene, 32369
Gm32322 12 70689411 to 70693101 3690 - lncRNA gene predicted gene, 32322
Gm40437 12 70729292 to 70741715 12423 - lincRNA gene predicted gene, 40437
D12Mit72 12 70747809 to 70748023 214 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 72
Tssr3856 12 70808949 to 70808956 7 + TSS region transcription start site region 3856
Cpgi4713 12 70824794 to 70826201 1407 CpG island CpG island 4713
Tssr113692 12 70825450 to 70825479 29 + TSS region transcription start site region 113692
Tssr113693 12 70825492 to 70825514 22 + TSS region transcription start site region 113693
Frmd6 12 70825514 to 70902234 76720 + protein coding gene FERM domain containing 6
Cpgi4714 12 70826437 to 70826605 168 CpG island CpG island 4714
Tssr113694 12 70842721 to 70842725 4 + TSS region transcription start site region 113694
Tssr113695 12 70852933 to 70852937 4 + TSS region transcription start site region 113695
C030018P15Rik 12 70885317 to 70886910 1593 unclassified gene RIKEN cDNA C030018P15 gene
Tssr113696 12 70885836 to 70885839 3 + TSS region transcription start site region 113696
Gm32664 12 70903401 to 70909679 6278 + lncRNA gene predicted gene, 32664
Gm46355 12 70909453 to 70911819 2366 - lincRNA gene predicted gene, 46355
Tssr113697 12 70910640 to 70910641 1 + TSS region transcription start site region 113697
Gm10457 12 70912697 to 70914478 1781 + lincRNA gene predicted gene 10457
Gm24857 12 70935328 to 70935637 309 + unclassified non-coding RNA gene predicted gene, 24857
Cpgi4715 12 70937639 to 70938271 632 CpG island CpG island 4715
Actr10 12 70937857 to 70964718 26861 + protein coding gene ARP10 actin-related protein 10
Tssr113698 12 70937865 to 70937939 74 + TSS region transcription start site region 113698
Tssr113699 12 70939937 to 70939958 21 + TSS region transcription start site region 113699
Cpgi4716 12 70968315 to 70968749 434 CpG island CpG island 4716
Tssr113700 12 70968332 to 70968352 20 + TSS region transcription start site region 113700
Tssr116572 12 70968686 to 70968701 15 - TSS region transcription start site region 116572
n-TKctt17 12 70969120 to 70969192 72 - tRNA gene nuclear encoded tRNA lysine 17 (anticodon CTT)
Cpgi4717 12 70974385 to 70975318 933 CpG island CpG island 4717
Psma3 12 70974621 to 70996347 21726 + protein coding gene proteasome (prosome, macropain) subunit, alpha type 3
Tssr113701 12 70974656 to 70974686 30 + TSS region transcription start site region 113701
Tssr113702 12 70974714 to 70974726 12 + TSS region transcription start site region 113702
Tssr113703 12 70974966 to 70975005 39 + TSS region transcription start site region 113703
Tssr113704 12 70989981 to 70990004 23 + TSS region transcription start site region 113704
Tssr113705 12 70990310 to 70990318 8 + TSS region transcription start site region 113705
3110056K07Rik 12 70991615 to 71015823 24208 - lncRNA gene RIKEN cDNA 3110056K07 gene
Tssr113706 12 70995069 to 70995070 1 + TSS region transcription start site region 113706
Tssr113707 12 70997533 to 70997539 6 + TSS region transcription start site region 113707
D12Mit251 12 70998565 to 70998685 120 DNA segment DNA Segment, Chr 12, Massachusetts Institute of Technology 251