Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:70275328-71595637

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129 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Trim9 12 70244533 to 70347614 103081 - protein coding gene tripartite motif-containing 9
Gm48747 12 70251165 to 70275597 24432 + antisense lncRNA gene predicted gene, 48747
Tssr116564 12 70280653 to 70280661 8 - TSS region transcription start site region 116564
Tssr116565 12 70316319 to 70316326 7 - TSS region transcription start site region 116565
Cpgi4710 12 70345979 to 70347885 1906 CpG island CpG island 4710
Tssr116566 12 70346854 to 70346867 13 - TSS region transcription start site region 116566
Tssr116567 12 70347300 to 70347360 60 - TSS region transcription start site region 116567
Gm32151 12 70347462 to 70351706 4244 + bidirectional promoter lncRNA gene predicted gene, 32151
Tssr116568 12 70347498 to 70347513 15 - TSS region transcription start site region 116568
Tssr116569 12 70347536 to 70347556 20 - TSS region transcription start site region 116569
Gm40435 12 70366749 to 70369457 2708 - lncRNA gene predicted gene, 40435
Tssr116570 12 70371686 to 70371689 3 - TSS region transcription start site region 116570
Cpgi4711 12 70452823 to 70453575 752 CpG island CpG island 4711
Tssr113679 12 70453074 to 70453080 6 + TSS region transcription start site region 113679
Tssr113680 12 70453096 to 70453107 11 + TSS region transcription start site region 113680
Tssr113681 12 70453121 to 70453165 44 + TSS region transcription start site region 113681
Tmx1 12 70453154 to 70467624 14470 + protein coding gene thioredoxin-related transmembrane protein 1
Tssr113682 12 70455391 to 70455406 15 + TSS region transcription start site region 113682
Tssr113683 12 70455706 to 70455710 4 + TSS region transcription start site region 113683
Tssr113684 12 70459824 to 70459835 11 + TSS region transcription start site region 113684
Tssr113685 12 70459866 to 70459873 7 + TSS region transcription start site region 113685
Tssr113686 12 70460522 to 70460547 25 + TSS region transcription start site region 113686
Tssr113687 12 70466115 to 70466135 20 + TSS region transcription start site region 113687
Gm48847 12 70478615 to 70493247 14632 + lincRNA gene predicted gene, 48847
Tssr116571 12 70514010 to 70514015 5 - TSS region transcription start site region 116571
Gm32219 12 70535666 to 70544587 8921 + lincRNA gene predicted gene, 32219
Cpgi4712 12 70539896 to 70540195 299 CpG island CpG island 4712
Gm40436 12 70590499 to 70622711 32212 + lncRNA gene predicted gene, 40436
Tssr113688 12 70649994 to 70650002 8 + TSS region transcription start site region 113688
Tssr113689 12 70650013 to 70650031 18 + TSS region transcription start site region 113689
Tssr113690 12 70650075 to 70650088 13 + TSS region transcription start site region 113690
Gm24474 12 70650182 to 70693780 43598 + lincRNA gene predicted gene, 24474
Tssr113691 12 70672429 to 70672444 15 + TSS region transcription start site region 113691
Gm47290 12 70673646 to 70673746 100 + snRNA gene predicted gene, 47290
Gm48866 12 70674123 to 70675456 1333 + lincRNA gene predicted gene, 48866
Gm32369 12 70679780 to 70682215 2435 - lincRNA gene predicted gene, 32369
Gm32322 12 70689411 to 70693101 3690 - lncRNA gene predicted gene, 32322
Gm40437 12 70729292 to 70741715 12423 - lincRNA gene predicted gene, 40437
D12Mit72 12 70747809 to 70748023 214 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 72
Tssr3856 12 70808949 to 70808956 7 + TSS region transcription start site region 3856
Cpgi4713 12 70824794 to 70826201 1407 CpG island CpG island 4713
Tssr113692 12 70825450 to 70825479 29 + TSS region transcription start site region 113692
Tssr113693 12 70825492 to 70825514 22 + TSS region transcription start site region 113693
Frmd6 12 70825514 to 70902234 76720 + protein coding gene FERM domain containing 6
Cpgi4714 12 70826437 to 70826605 168 CpG island CpG island 4714
Tssr113694 12 70842721 to 70842725 4 + TSS region transcription start site region 113694
Tssr113695 12 70852933 to 70852937 4 + TSS region transcription start site region 113695
C030018P15Rik 12 70885317 to 70886910 1593 unclassified gene RIKEN cDNA C030018P15 gene
Tssr113696 12 70885836 to 70885839 3 + TSS region transcription start site region 113696
Gm32664 12 70903401 to 70909679 6278 + lncRNA gene predicted gene, 32664
Gm46355 12 70909453 to 70911819 2366 - lincRNA gene predicted gene, 46355
Tssr113697 12 70910640 to 70910641 1 + TSS region transcription start site region 113697
Gm10457 12 70912697 to 70914478 1781 + lincRNA gene predicted gene 10457
Gm24857 12 70935328 to 70935637 309 + unclassified non-coding RNA gene predicted gene, 24857
Cpgi4715 12 70937639 to 70938271 632 CpG island CpG island 4715
Actr10 12 70937857 to 70964718 26861 + protein coding gene ARP10 actin-related protein 10
Tssr113698 12 70937865 to 70937939 74 + TSS region transcription start site region 113698
Tssr113699 12 70939937 to 70939958 21 + TSS region transcription start site region 113699
Cpgi4716 12 70968315 to 70968749 434 CpG island CpG island 4716
Tssr113700 12 70968332 to 70968352 20 + TSS region transcription start site region 113700
Tssr116572 12 70968686 to 70968701 15 - TSS region transcription start site region 116572
n-TKctt17 12 70969120 to 70969192 72 - tRNA gene nuclear encoded tRNA lysine 17 (anticodon CTT)
Cpgi4717 12 70974385 to 70975318 933 CpG island CpG island 4717
Psma3 12 70974621 to 70996347 21726 + protein coding gene proteasome (prosome, macropain) subunit, alpha type 3
Tssr113701 12 70974656 to 70974686 30 + TSS region transcription start site region 113701
Tssr113702 12 70974714 to 70974726 12 + TSS region transcription start site region 113702
Tssr113703 12 70974966 to 70975005 39 + TSS region transcription start site region 113703
Tssr113704 12 70989981 to 70990004 23 + TSS region transcription start site region 113704
Tssr113705 12 70990310 to 70990318 8 + TSS region transcription start site region 113705
3110056K07Rik 12 70991615 to 71015823 24208 - lncRNA gene RIKEN cDNA 3110056K07 gene
Tssr113706 12 70995069 to 70995070 1 + TSS region transcription start site region 113706
Tssr113707 12 70997533 to 70997539 6 + TSS region transcription start site region 113707
D12Mit251 12 70998565 to 70998685 120 DNA segment DNA Segment, Chr 12, Massachusetts Institute of Technology 251
Tssr116573 12 71007308 to 71007316 8 - TSS region transcription start site region 116573
Tssr116574 12 71009256 to 71009259 3 - TSS region transcription start site region 116574
Cpgi4718 12 71014972 to 71017413 2441 CpG island CpG island 4718
Tssr116575 12 71015546 to 71015553 7 - TSS region transcription start site region 116575
Tssr116576 12 71015570 to 71015605 35 - TSS region transcription start site region 116576
Tssr113708 12 71015930 to 71015950 20 + TSS region transcription start site region 113708
Tssr113709 12 71015966 to 71016063 97 + TSS region transcription start site region 113709
Arid4a 12 71015990 to 71098592 82602 + protein coding gene AT rich interactive domain 4A (RBP1-like)
Tssr113710 12 71016658 to 71016690 32 + TSS region transcription start site region 113710
D12Mit200 12 71017272 to 71017378 106 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 200
D12Mit200.3 12 71017364 to 71017479 115 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 200.3
Tssr113711 12 71036965 to 71036976 11 + TSS region transcription start site region 113711
Tssr113712 12 71048338 to 71048356 18 + TSS region transcription start site region 113712
Tssr113713 12 71048372 to 71048419 47 + TSS region transcription start site region 113713
Tssr113714 12 71059382 to 71059383 1 + TSS region transcription start site region 113714
Tssr113715 12 71063200 to 71063212 12 + TSS region transcription start site region 113715
Tssr113716 12 71063256 to 71063279 23 + TSS region transcription start site region 113716
Tssr113717 12 71069989 to 71069994 5 + TSS region transcription start site region 113717
Tssr113718 12 71074960 to 71074996 36 + TSS region transcription start site region 113718
Tssr113719 12 71097636 to 71097650 14 + TSS region transcription start site region 113719
Cpgi4719 12 71111271 to 71111706 435 CpG island CpG island 4719
Tssr113720 12 71111402 to 71111413 11 + TSS region transcription start site region 113720
Tssr113721 12 71111418 to 71111456 38 + TSS region transcription start site region 113721
Tomm20l 12 71111428 to 71123221 11793 + protein coding gene translocase of outer mitochondrial membrane 20-like
Tssr3857 12 71111457 to 71111461 4 + TSS region transcription start site region 3857
Gm32906 12 71111507 to 71114257 2750 - lncRNA gene predicted gene, 32906
Tssr116577 12 71114060 to 71114076 16 - TSS region transcription start site region 116577
Tssr116578 12 71114077 to 71114100 23 - TSS region transcription start site region 116578
Timm9 12 71123172 to 71136675 13503 - protein coding gene translocase of inner mitochondrial membrane 9
Cpgi4720 12 71136212 to 71136791 579 CpG island CpG island 4720
Tssr116579 12 71136611 to 71136701 90 - TSS region transcription start site region 116579
2700049A03Rik 12 71136848 to 71243303 106455 + protein coding gene RIKEN cDNA 2700049A03 gene
Tssr113722 12 71137157 to 71137160 3 + TSS region transcription start site region 113722
Tssr113723 12 71137170 to 71137221 51 + TSS region transcription start site region 113723
Tssr113724 12 71137225 to 71137242 17 + TSS region transcription start site region 113724
Tssr113725 12 71137593 to 71137601 8 + TSS region transcription start site region 113725
Gm19045 12 71203604 to 71204386 782 - pseudogene predicted gene, 19045
D12Mit92 12 71254593 to 71254732 139 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 92
Gm7959 12 71268744 to 71270357 1613 - pseudogene predicted gene 7959
Cpgi4721 12 71309254 to 71310774 1520 CpG island CpG island 4721
Tssr113726 12 71309858 to 71309874 16 + TSS region transcription start site region 113726
Tssr113727 12 71309876 to 71309910 34 + TSS region transcription start site region 113727
Dact1 12 71309884 to 71320107 10223 + protein coding gene dishevelled-binding antagonist of beta-catenin 1
4930474H06Rik 12 71317621 to 71321660 4039 - unclassified non-coding RNA gene RIKEN cDNA 4930474H06 gene
Cpgi4722 12 71318015 to 71318912 897 CpG island CpG island 4722
Gm33016 12 71337628 to 71342803 5175 + lincRNA gene predicted gene, 33016
Tssr113728 12 71355435 to 71355454 19 + TSS region transcription start site region 113728
Gm40438 12 71355454 to 71362077 6623 + lincRNA gene predicted gene, 40438
Tssr113729 12 71361922 to 71361940 18 + TSS region transcription start site region 113729
1700083H02Rik 12 71383154 to 71384208 1054 - lincRNA gene RIKEN cDNA 1700083H02 gene
Tssr116580 12 71384185 to 71384235 50 - TSS region transcription start site region 116580
Gm17945 12 71460478 to 71461342 864 - pseudogene predicted gene, 17945
D12Mit90 12 71489147 to 71489294 147 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 90
4930404H11Rik 12 71540607 to 71556133 15526 + lincRNA gene RIKEN cDNA 4930404H11 gene
Gm40439 12 71561109 to 71563821 2712 + lncRNA gene predicted gene, 40439
9630002D21Rik 12 71577931 to 71718589 140658 + lincRNA gene RIKEN cDNA 9630002D21 gene