Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:69790328-72080637

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249 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cdkl1 12 69746848 to 69791267 44419 - protein coding gene cyclin-dependent kinase-like 1 (CDC2-related kinase)
4930512B01Rik 12 69790288 to 69840479 50191 + lncRNA gene RIKEN cDNA 4930512B01 gene
Cpgi4702 12 69790472 to 69791400 928 CpG island CpG island 4702
Tssr116530 12 69790605 to 69790631 26 - TSS region transcription start site region 116530
Tssr116531 12 69790660 to 69790735 75 - TSS region transcription start site region 116531
Tssr116532 12 69791229 to 69791293 64 - TSS region transcription start site region 116532
Tssr116533 12 69791294 to 69791295 1 - TSS region transcription start site region 116533
Tssr116534 12 69791311 to 69791323 12 - TSS region transcription start site region 116534
Tssr116535 12 69791325 to 69791338 13 - TSS region transcription start site region 116535
Tssr116536 12 69791353 to 69791364 11 - TSS region transcription start site region 116536
Lnopy2 12 69799852 to 69800022 170 QTL lens opacity 2
D12Mit34 12 69799852 to 69800022 170 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 34
Map4k5 12 69803757 to 69893170 89413 - protein coding gene mitogen-activated protein kinase kinase kinase kinase 5
Gm18030 12 69819647 to 69820377 730 + pseudogene predicted gene, 18030
Tssr113655 12 69843669 to 69843695 26 + TSS region transcription start site region 113655
4931403G20Rik 12 69847635 to 69853671 6036 + lincRNA gene RIKEN cDNA 4931403G20 gene
Cpgi4703 12 69892325 to 69893543 1218 CpG island CpG island 4703
Tssr116537 12 69892779 to 69892792 13 - TSS region transcription start site region 116537
Tssr116538 12 69892989 to 69893082 93 - TSS region transcription start site region 116538
Atl1 12 69893105 to 69964085 70980 + protein coding gene atlastin GTPase 1
Tssr116539 12 69893134 to 69893151 17 - TSS region transcription start site region 116539
Tssr116540 12 69893162 to 69893176 14 - TSS region transcription start site region 116540
Tssr113656 12 69893221 to 69893276 55 + TSS region transcription start site region 113656
Tssr113657 12 69907734 to 69907745 11 + TSS region transcription start site region 113657
Tssr113658 12 69907747 to 69907754 7 + TSS region transcription start site region 113658
Tssr113659 12 69907793 to 69907808 15 + TSS region transcription start site region 113659
Tssr113660 12 69907817 to 69907826 9 + TSS region transcription start site region 113660
Tssr113661 12 69907828 to 69907843 15 + TSS region transcription start site region 113661
Cpgi4704 12 69907848 to 69908862 1014 CpG island CpG island 4704
Tssr113662 12 69907853 to 69907863 10 + TSS region transcription start site region 113662
Tssr113663 12 69907882 to 69907889 7 + TSS region transcription start site region 113663
Tssr113664 12 69907900 to 69907910 10 + TSS region transcription start site region 113664
Tssr113665 12 69907937 to 69907940 3 + TSS region transcription start site region 113665
Gm6316 12 69920472 to 69921491 1019 - pseudogene predicted pseudogene 6316
Tssr113666 12 69930903 to 69930906 3 + TSS region transcription start site region 113666
Gm22058 12 69930904 to 69931213 309 + unclassified non-coding RNA gene predicted gene, 22058
Tssr113667 12 69946142 to 69946159 17 + TSS region transcription start site region 113667
Tssr113668 12 69946169 to 69946193 24 + TSS region transcription start site region 113668
Gm3086 12 69963409 to 69969736 6327 + pseudogene predicted gene 3086
Tssr113669 12 69963412 to 69963440 28 + TSS region transcription start site region 113669
Tssr113670 12 69963452 to 69963474 22 + TSS region transcription start site region 113670
Sav1 12 69965012 to 69987002 21990 - protein coding gene salvador family WW domain containing 1
Gm19144 12 69970894 to 69972541 1647 + pseudogene predicted gene, 19144
Tssr116541 12 69976126 to 69976139 13 - TSS region transcription start site region 116541
Tssr116542 12 69979060 to 69979082 22 - TSS region transcription start site region 116542
Gm19221 12 69980886 to 69982468 1582 + pseudogene predicted gene, 19221
Tssr116543 12 69982741 to 69982744 3 - TSS region transcription start site region 116543
Tssr113671 12 69985824 to 69985839 15 + TSS region transcription start site region 113671
Cpgi4705 12 69986177 to 69987517 1340 CpG island CpG island 4705
Tssr113672 12 69986412 to 69986429 17 + TSS region transcription start site region 113672
Tssr113673 12 69986439 to 69986462 23 + TSS region transcription start site region 113673
Tssr113674 12 69986827 to 69986836 9 + TSS region transcription start site region 113674
Tssr116544 12 69986958 to 69986967 9 - TSS region transcription start site region 116544
Tssr116545 12 69987039 to 69987100 61 - TSS region transcription start site region 116545
Tssr116546 12 69987101 to 69987112 11 - TSS region transcription start site region 116546
Tssr113675 12 69987190 to 69987199 9 + TSS region transcription start site region 113675
Tssr113676 12 69987201 to 69987212 11 + TSS region transcription start site region 113676
Gm23579 12 69994790 to 69994892 102 - snRNA gene predicted gene, 23579
Nin 12 70011435 to 70113717 102282 - protein coding gene ninein
Tssr116547 12 70044412 to 70044420 8 - TSS region transcription start site region 116547
Tssr116548 12 70073793 to 70073798 5 - TSS region transcription start site region 116548
Tssr116549 12 70084158 to 70084162 4 - TSS region transcription start site region 116549
D12Mit114 12 70085228 to 70085371 143 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 114
Vtbt13 12 70085228 to 70085371 143 QTL vertebral trabecular bone trait 13
D12Dcr5 12 70085232 to 70085335 103 DNA segment DNA Segment, Chr 12, Derry C. Roopenian 5
Cpgi4706 12 70110779 to 70112592 1813 CpG island CpG island 4706
Tssr116550 12 70111258 to 70111274 16 - TSS region transcription start site region 116550
Tssr116551 12 70111290 to 70111301 11 - TSS region transcription start site region 116551
Tssr116552 12 70111574 to 70111588 14 - TSS region transcription start site region 116552
Tssr116553 12 70111948 to 70111959 11 - TSS region transcription start site region 116553
Tssr116554 12 70111965 to 70112039 74 - TSS region transcription start site region 116554
Gm48695 12 70113574 to 70115954 2380 + bidirectional promoter lncRNA gene predicted gene, 48695
Tssr116555 12 70113732 to 70113768 36 - TSS region transcription start site region 116555
Cpgi4707 12 70134688 to 70134869 181 CpG island CpG island 4707
Tssr116556 12 70136261 to 70136276 15 - TSS region transcription start site region 116556
Tssr113677 12 70154124 to 70154157 33 + TSS region transcription start site region 113677
Abhd12b 12 70154171 to 70183206 29035 + protein coding gene abhydrolase domain containing 12B
Pygl 12 70190815 to 70227683 36868 - protein coding gene liver glycogen phosphorylase
Tssr3855 12 70219437 to 70219452 15 + TSS region transcription start site region 3855
Cpgi4708 12 70227146 to 70227941 795 CpG island CpG island 4708
Tssr116557 12 70227430 to 70227454 24 - TSS region transcription start site region 116557
Tssr116558 12 70227622 to 70227639 17 - TSS region transcription start site region 116558
Tssr116559 12 70227658 to 70227669 11 - TSS region transcription start site region 116559
F730035M05Rik 12 70227841 to 70234165 6324 + lincRNA gene RIKEN cDNA F730035M05 gene
Gm38467 12 70229349 to 70233132 3783 - lncRNA gene predicted gene, 38467
Tssr116560 12 70231414 to 70231457 43 - TSS region transcription start site region 116560
Tssr116561 12 70232343 to 70232348 5 - TSS region transcription start site region 116561
Tssr113678 12 70233864 to 70233898 34 + TSS region transcription start site region 113678
Trim9 12 70244533 to 70347614 103081 - protein coding gene tripartite motif-containing 9
Cpgi4709 12 70246163 to 70246484 321 CpG island CpG island 4709
Gm48747 12 70251165 to 70275597 24432 + antisense lncRNA gene predicted gene, 48747
Tssr116562 12 70263435 to 70263446 11 - TSS region transcription start site region 116562
Tssr116563 12 70269237 to 70269240 3 - TSS region transcription start site region 116563
Tssr116564 12 70280653 to 70280661 8 - TSS region transcription start site region 116564
Tssr116565 12 70316319 to 70316326 7 - TSS region transcription start site region 116565
Cpgi4710 12 70345979 to 70347885 1906 CpG island CpG island 4710
Tssr116566 12 70346854 to 70346867 13 - TSS region transcription start site region 116566
Tssr116567 12 70347300 to 70347360 60 - TSS region transcription start site region 116567
Gm32151 12 70347462 to 70351706 4244 + bidirectional promoter lncRNA gene predicted gene, 32151
Tssr116568 12 70347498 to 70347513 15 - TSS region transcription start site region 116568
Tssr116569 12 70347536 to 70347556 20 - TSS region transcription start site region 116569
Gm40435 12 70366749 to 70369457 2708 - lncRNA gene predicted gene, 40435
Tssr116570 12 70371686 to 70371689 3 - TSS region transcription start site region 116570
Cpgi4711 12 70452823 to 70453575 752 CpG island CpG island 4711
Tssr113679 12 70453074 to 70453080 6 + TSS region transcription start site region 113679
Tssr113680 12 70453096 to 70453107 11 + TSS region transcription start site region 113680
Tssr113681 12 70453121 to 70453165 44 + TSS region transcription start site region 113681
Tmx1 12 70453154 to 70467624 14470 + protein coding gene thioredoxin-related transmembrane protein 1
Tssr113682 12 70455391 to 70455406 15 + TSS region transcription start site region 113682
Tssr113683 12 70455706 to 70455710 4 + TSS region transcription start site region 113683
Tssr113684 12 70459824 to 70459835 11 + TSS region transcription start site region 113684
Tssr113685 12 70459866 to 70459873 7 + TSS region transcription start site region 113685
Tssr113686 12 70460522 to 70460547 25 + TSS region transcription start site region 113686
Tssr113687 12 70466115 to 70466135 20 + TSS region transcription start site region 113687
Gm48847 12 70478615 to 70493247 14632 + lincRNA gene predicted gene, 48847
Tssr116571 12 70514010 to 70514015 5 - TSS region transcription start site region 116571
Gm32219 12 70535666 to 70544587 8921 + lincRNA gene predicted gene, 32219
Cpgi4712 12 70539896 to 70540195 299 CpG island CpG island 4712
Gm40436 12 70590499 to 70622711 32212 + lncRNA gene predicted gene, 40436
Tssr113688 12 70649994 to 70650002 8 + TSS region transcription start site region 113688
Tssr113689 12 70650013 to 70650031 18 + TSS region transcription start site region 113689
Tssr113690 12 70650075 to 70650088 13 + TSS region transcription start site region 113690
Gm24474 12 70650182 to 70693780 43598 + lincRNA gene predicted gene, 24474
Tssr113691 12 70672429 to 70672444 15 + TSS region transcription start site region 113691
Gm47290 12 70673646 to 70673746 100 + snRNA gene predicted gene, 47290
Gm48866 12 70674123 to 70675456 1333 + lincRNA gene predicted gene, 48866
Gm32369 12 70679780 to 70682215 2435 - lincRNA gene predicted gene, 32369
Gm32322 12 70689411 to 70693101 3690 - lncRNA gene predicted gene, 32322
Gm40437 12 70729292 to 70741715 12423 - lincRNA gene predicted gene, 40437
D12Mit72 12 70747809 to 70748023 214 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 72
Tssr3856 12 70808949 to 70808956 7 + TSS region transcription start site region 3856
Cpgi4713 12 70824794 to 70826201 1407 CpG island CpG island 4713
Tssr113692 12 70825450 to 70825479 29 + TSS region transcription start site region 113692
Tssr113693 12 70825492 to 70825514 22 + TSS region transcription start site region 113693
Frmd6 12 70825514 to 70902234 76720 + protein coding gene FERM domain containing 6
Cpgi4714 12 70826437 to 70826605 168 CpG island CpG island 4714
Tssr113694 12 70842721 to 70842725 4 + TSS region transcription start site region 113694
Tssr113695 12 70852933 to 70852937 4 + TSS region transcription start site region 113695
C030018P15Rik 12 70885317 to 70886910 1593 unclassified gene RIKEN cDNA C030018P15 gene
Tssr113696 12 70885836 to 70885839 3 + TSS region transcription start site region 113696
Gm32664 12 70903401 to 70909679 6278 + lncRNA gene predicted gene, 32664
Gm46355 12 70909453 to 70911819 2366 - lincRNA gene predicted gene, 46355
Tssr113697 12 70910640 to 70910641 1 + TSS region transcription start site region 113697
Gm10457 12 70912697 to 70914478 1781 + lincRNA gene predicted gene 10457
Gm24857 12 70935328 to 70935637 309 + unclassified non-coding RNA gene predicted gene, 24857
Cpgi4715 12 70937639 to 70938271 632 CpG island CpG island 4715
Actr10 12 70937857 to 70964718 26861 + protein coding gene ARP10 actin-related protein 10
Tssr113698 12 70937865 to 70937939 74 + TSS region transcription start site region 113698
Tssr113699 12 70939937 to 70939958 21 + TSS region transcription start site region 113699
Cpgi4716 12 70968315 to 70968749 434 CpG island CpG island 4716
Tssr113700 12 70968332 to 70968352 20 + TSS region transcription start site region 113700
Tssr116572 12 70968686 to 70968701 15 - TSS region transcription start site region 116572
n-TKctt17 12 70969120 to 70969192 72 - tRNA gene nuclear encoded tRNA lysine 17 (anticodon CTT)
Cpgi4717 12 70974385 to 70975318 933 CpG island CpG island 4717
Psma3 12 70974621 to 70996347 21726 + protein coding gene proteasome (prosome, macropain) subunit, alpha type 3
Tssr113701 12 70974656 to 70974686 30 + TSS region transcription start site region 113701
Tssr113702 12 70974714 to 70974726 12 + TSS region transcription start site region 113702
Tssr113703 12 70974966 to 70975005 39 + TSS region transcription start site region 113703
Tssr113704 12 70989981 to 70990004 23 + TSS region transcription start site region 113704
Tssr113705 12 70990310 to 70990318 8 + TSS region transcription start site region 113705
3110056K07Rik 12 70991615 to 71015823 24208 - lncRNA gene RIKEN cDNA 3110056K07 gene
Tssr113706 12 70995069 to 70995070 1 + TSS region transcription start site region 113706
Tssr113707 12 70997533 to 70997539 6 + TSS region transcription start site region 113707
D12Mit251 12 70998565 to 70998685 120 DNA segment DNA Segment, Chr 12, Massachusetts Institute of Technology 251
Tssr116573 12 71007308 to 71007316 8 - TSS region transcription start site region 116573
Tssr116574 12 71009256 to 71009259 3 - TSS region transcription start site region 116574
Cpgi4718 12 71014972 to 71017413 2441 CpG island CpG island 4718
Tssr116575 12 71015546 to 71015553 7 - TSS region transcription start site region 116575
Tssr116576 12 71015570 to 71015605 35 - TSS region transcription start site region 116576
Tssr113708 12 71015930 to 71015950 20 + TSS region transcription start site region 113708
Tssr113709 12 71015966 to 71016063 97 + TSS region transcription start site region 113709
Arid4a 12 71015990 to 71098592 82602 + protein coding gene AT rich interactive domain 4A (RBP1-like)
Tssr113710 12 71016658 to 71016690 32 + TSS region transcription start site region 113710
D12Mit200 12 71017272 to 71017378 106 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 200
D12Mit200.3 12 71017364 to 71017479 115 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 200.3
Tssr113711 12 71036965 to 71036976 11 + TSS region transcription start site region 113711
Tssr113712 12 71048338 to 71048356 18 + TSS region transcription start site region 113712
Tssr113713 12 71048372 to 71048419 47 + TSS region transcription start site region 113713
Tssr113714 12 71059382 to 71059383 1 + TSS region transcription start site region 113714
Tssr113715 12 71063200 to 71063212 12 + TSS region transcription start site region 113715
Tssr113716 12 71063256 to 71063279 23 + TSS region transcription start site region 113716
Tssr113717 12 71069989 to 71069994 5 + TSS region transcription start site region 113717
Tssr113718 12 71074960 to 71074996 36 + TSS region transcription start site region 113718
Tssr113719 12 71097636 to 71097650 14 + TSS region transcription start site region 113719
Cpgi4719 12 71111271 to 71111706 435 CpG island CpG island 4719
Tssr113720 12 71111402 to 71111413 11 + TSS region transcription start site region 113720
Tssr113721 12 71111418 to 71111456 38 + TSS region transcription start site region 113721
Tomm20l 12 71111428 to 71123221 11793 + protein coding gene translocase of outer mitochondrial membrane 20-like
Tssr3857 12 71111457 to 71111461 4 + TSS region transcription start site region 3857
Gm32906 12 71111507 to 71114257 2750 - lncRNA gene predicted gene, 32906
Tssr116577 12 71114060 to 71114076 16 - TSS region transcription start site region 116577
Tssr116578 12 71114077 to 71114100 23 - TSS region transcription start site region 116578
Timm9 12 71123172 to 71136675 13503 - protein coding gene translocase of inner mitochondrial membrane 9
Cpgi4720 12 71136212 to 71136791 579 CpG island CpG island 4720
Tssr116579 12 71136611 to 71136701 90 - TSS region transcription start site region 116579
2700049A03Rik 12 71136848 to 71243303 106455 + protein coding gene RIKEN cDNA 2700049A03 gene
Tssr113722 12 71137157 to 71137160 3 + TSS region transcription start site region 113722
Tssr113723 12 71137170 to 71137221 51 + TSS region transcription start site region 113723
Tssr113724 12 71137225 to 71137242 17 + TSS region transcription start site region 113724
Tssr113725 12 71137593 to 71137601 8 + TSS region transcription start site region 113725