Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:69787937-70027940

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62 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cdkl1 12 69746848 to 69791267 44419 - protein coding gene cyclin-dependent kinase-like 1 (CDC2-related kinase)
Tssr116527 12 69790255 to 69790273 18 - TSS region transcription start site region 116527
Tssr116528 12 69790274 to 69790276 2 - TSS region transcription start site region 116528
Tssr116529 12 69790281 to 69790298 17 - TSS region transcription start site region 116529
4930512B01Rik 12 69790288 to 69840479 50191 + lncRNA gene RIKEN cDNA 4930512B01 gene
Cpgi4702 12 69790472 to 69791400 928 CpG island CpG island 4702
Tssr116530 12 69790605 to 69790631 26 - TSS region transcription start site region 116530
Tssr116531 12 69790660 to 69790735 75 - TSS region transcription start site region 116531
Tssr116532 12 69791229 to 69791293 64 - TSS region transcription start site region 116532
Tssr116533 12 69791294 to 69791295 1 - TSS region transcription start site region 116533
Tssr116534 12 69791311 to 69791323 12 - TSS region transcription start site region 116534
Tssr116535 12 69791325 to 69791338 13 - TSS region transcription start site region 116535
Tssr116536 12 69791353 to 69791364 11 - TSS region transcription start site region 116536
Lnopy2 12 69799852 to 69800022 170 QTL lens opacity 2
D12Mit34 12 69799852 to 69800022 170 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 34
Map4k5 12 69803757 to 69893170 89413 - protein coding gene mitogen-activated protein kinase kinase kinase kinase 5
Gm18030 12 69819647 to 69820377 730 + pseudogene predicted gene, 18030
Tssr113655 12 69843669 to 69843695 26 + TSS region transcription start site region 113655
4931403G20Rik 12 69847635 to 69853671 6036 + lincRNA gene RIKEN cDNA 4931403G20 gene
Cpgi4703 12 69892325 to 69893543 1218 CpG island CpG island 4703
Tssr116537 12 69892779 to 69892792 13 - TSS region transcription start site region 116537
Tssr116538 12 69892989 to 69893082 93 - TSS region transcription start site region 116538
Atl1 12 69893105 to 69964085 70980 + protein coding gene atlastin GTPase 1
Tssr116539 12 69893134 to 69893151 17 - TSS region transcription start site region 116539
Tssr116540 12 69893162 to 69893176 14 - TSS region transcription start site region 116540
Tssr113656 12 69893221 to 69893276 55 + TSS region transcription start site region 113656
Tssr113657 12 69907734 to 69907745 11 + TSS region transcription start site region 113657
Tssr113658 12 69907747 to 69907754 7 + TSS region transcription start site region 113658
Tssr113659 12 69907793 to 69907808 15 + TSS region transcription start site region 113659
Tssr113660 12 69907817 to 69907826 9 + TSS region transcription start site region 113660
Tssr113661 12 69907828 to 69907843 15 + TSS region transcription start site region 113661
Cpgi4704 12 69907848 to 69908862 1014 CpG island CpG island 4704
Tssr113662 12 69907853 to 69907863 10 + TSS region transcription start site region 113662
Tssr113663 12 69907882 to 69907889 7 + TSS region transcription start site region 113663
Tssr113664 12 69907900 to 69907910 10 + TSS region transcription start site region 113664
Tssr113665 12 69907937 to 69907940 3 + TSS region transcription start site region 113665
Gm6316 12 69920472 to 69921491 1019 - pseudogene predicted pseudogene 6316
Tssr113666 12 69930903 to 69930906 3 + TSS region transcription start site region 113666
Gm22058 12 69930904 to 69931213 309 + unclassified non-coding RNA gene predicted gene, 22058
Tssr113667 12 69946142 to 69946159 17 + TSS region transcription start site region 113667
Tssr113668 12 69946169 to 69946193 24 + TSS region transcription start site region 113668
Gm3086 12 69963409 to 69969736 6327 + pseudogene predicted gene 3086
Tssr113669 12 69963412 to 69963440 28 + TSS region transcription start site region 113669
Tssr113670 12 69963452 to 69963474 22 + TSS region transcription start site region 113670
Sav1 12 69965012 to 69987002 21990 - protein coding gene salvador family WW domain containing 1
Gm19144 12 69970894 to 69972541 1647 + pseudogene predicted gene, 19144
Tssr116541 12 69976126 to 69976139 13 - TSS region transcription start site region 116541
Tssr116542 12 69979060 to 69979082 22 - TSS region transcription start site region 116542
Gm19221 12 69980886 to 69982468 1582 + pseudogene predicted gene, 19221
Tssr116543 12 69982741 to 69982744 3 - TSS region transcription start site region 116543
Tssr113671 12 69985824 to 69985839 15 + TSS region transcription start site region 113671
Cpgi4705 12 69986177 to 69987517 1340 CpG island CpG island 4705
Tssr113672 12 69986412 to 69986429 17 + TSS region transcription start site region 113672
Tssr113673 12 69986439 to 69986462 23 + TSS region transcription start site region 113673
Tssr113674 12 69986827 to 69986836 9 + TSS region transcription start site region 113674
Tssr116544 12 69986958 to 69986967 9 - TSS region transcription start site region 116544
Tssr116545 12 69987039 to 69987100 61 - TSS region transcription start site region 116545
Tssr116546 12 69987101 to 69987112 11 - TSS region transcription start site region 116546
Tssr113675 12 69987190 to 69987199 9 + TSS region transcription start site region 113675
Tssr113676 12 69987201 to 69987212 11 + TSS region transcription start site region 113676
Gm23579 12 69994790 to 69994892 102 - snRNA gene predicted gene, 23579
Nin 12 70011435 to 70113717 102282 - protein coding gene ninein